Wall clock time and date at job start Mon Mar 30 2020 01:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34701 * 125.86004 * 2 1 4 4 C 1.36720 * 107.57857 * 180.02562 * 3 2 1 5 5 C 1.48143 * 126.26813 * 179.97438 * 4 3 2 6 6 N 1.32647 * 119.80467 * 325.00984 * 5 4 3 7 7 C 1.31763 * 121.69470 * 179.97438 * 6 5 4 8 8 C 1.38441 * 121.10214 * 359.97438 * 7 6 5 9 9 C 1.38505 * 119.48659 * 0.29843 * 8 7 6 10 10 C 1.39300 * 118.44055 * 359.46108 * 9 8 7 11 11 N 1.39172 * 120.55590 * 180.26523 * 10 9 8 12 12 C 1.34775 * 120.00098 * 325.37383 * 11 10 9 13 13 O 1.21794 * 120.00044 * 4.48156 * 12 11 10 14 14 C 1.41656 * 120.00183 * 184.47509 * 12 11 10 15 15 H 1.08001 * 119.99752 * 0.02562 * 14 12 11 16 16 C 1.40140 * 120.00282 * 180.02562 * 14 12 11 17 17 N 1.30635 * 119.99881 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00348 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46811 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47586 * 119.99689 * 18 16 14 21 21 H 1.48499 * 109.47172 * 240.00129 * 18 16 14 22 22 C 1.40993 * 107.47173 * 0.26567 * 4 3 2 23 23 N 1.30617 * 108.07069 * 359.55274 * 22 4 3 24 24 H 1.09000 * 109.47500 * 89.99611 * 1 2 3 25 25 H 1.08999 * 109.47269 * 209.99983 * 1 2 3 26 26 H 1.09008 * 109.47070 * 329.99653 * 1 2 3 27 27 H 1.07998 * 126.21154 * 0.02562 * 3 2 1 28 28 H 1.08003 * 119.44921 * 179.97438 * 7 6 5 29 29 H 1.08005 * 120.25183 * 180.02562 * 8 7 6 30 30 H 1.08004 * 120.77874 * 179.72220 * 9 8 7 31 31 H 0.97003 * 120.00121 * 145.37815 * 11 10 9 32 32 H 0.96997 * 119.99939 * 179.97438 * 17 16 14 33 33 H 1.07996 * 125.96594 * 179.71340 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2541 1.0917 0.0000 4 6 3.5523 0.6628 -0.0006 5 6 4.7591 1.5220 -0.0013 6 7 4.7489 2.6725 -0.6615 7 6 5.8009 3.4655 -0.6867 8 6 6.9667 3.1284 -0.0205 9 6 7.0313 1.9349 0.6793 10 6 5.9057 1.1144 0.6968 11 7 5.9202 -0.0918 1.3908 12 6 7.0522 -0.8208 1.4514 13 8 8.0829 -0.3864 0.9694 14 6 7.0432 -2.0923 2.0759 15 1 6.1292 -2.4777 2.5030 16 6 8.2204 -2.8501 2.1394 17 7 9.3260 -2.3837 1.6232 18 14 8.2084 -4.5270 2.9622 19 1 6.8422 -4.8226 3.4636 20 1 8.6102 -5.5641 1.9783 21 1 9.1633 -4.5272 4.0995 22 6 3.5324 -0.7470 -0.0072 23 7 2.2851 -1.1346 -0.0007 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.9217 2.1192 0.0004 28 1 5.7529 4.3941 -1.2363 29 1 7.8207 3.7890 -0.0500 30 1 7.9317 1.6492 1.2028 31 1 5.1156 -0.4080 1.8308 32 1 10.1409 -2.9081 1.6675 33 1 4.3974 -1.3935 -0.0136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001642076772.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:19 Heat of formation + Delta-G solvation = 80.966819 kcal Electronic energy + Delta-G solvation = -20074.372936 eV Core-core repulsion = 16909.066855 eV Total energy + Delta-G solvation = -3165.306081 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.03901 -39.49215 -37.44896 -33.98819 -33.24374 -32.42620 -31.80478 -30.09596 -28.70178 -26.78524 -26.30923 -23.08615 -22.65698 -20.68795 -20.20208 -19.95386 -17.70514 -17.14835 -16.12567 -15.76743 -15.37085 -15.27663 -15.10097 -14.27031 -14.11431 -13.50973 -13.33545 -12.90746 -12.75065 -12.62101 -12.58094 -12.29140 -12.14141 -11.58036 -11.32229 -11.14448 -10.68226 -10.53099 -10.32951 -9.74302 -9.29161 -9.24203 -9.04153 -8.95525 -8.13481 -7.70018 -6.99339 -6.40884 -4.94041 1.51389 2.04091 2.17235 2.62740 3.03273 3.10668 3.12740 3.17307 3.96379 4.29373 4.51417 4.54424 4.65055 4.95334 5.03094 5.06478 5.27032 5.31797 5.51078 5.60286 5.69392 5.80394 5.85073 6.08033 6.16876 6.34615 6.76071 6.88377 6.98651 7.13227 7.19386 7.24256 7.79657 7.87456 7.98373 8.11724 8.59102 8.77459 9.22887 10.33843 10.53694 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.006479 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.980666 B = 4320.513030 C = 5975.880766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.381 5.381 3 C 0.083 3.917 4 C -0.180 4.180 5 C 0.142 3.858 6 N -0.468 5.468 7 C 0.048 3.952 8 C -0.158 4.158 9 C -0.091 4.091 10 C 0.159 3.841 11 N -0.692 5.692 12 C 0.542 3.458 13 O -0.567 6.567 14 C -0.535 4.535 15 H 0.072 0.928 16 C 0.089 3.911 17 N -0.746 5.746 18 Si 0.911 3.089 19 H -0.261 1.261 20 H -0.274 1.274 21 H -0.274 1.274 22 C 0.074 3.926 23 N -0.300 5.300 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.177 0.823 28 H 0.145 0.855 29 H 0.125 0.875 30 H 0.153 0.847 31 H 0.394 0.606 32 H 0.273 0.727 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.674 6.311 -1.014 14.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.163 5.163 3 C -0.064 4.064 4 C -0.193 4.193 5 C 0.001 3.999 6 N -0.177 5.177 7 C -0.112 4.112 8 C -0.179 4.179 9 C -0.120 4.120 10 C 0.056 3.944 11 N -0.336 5.336 12 C 0.352 3.648 13 O -0.451 6.451 14 C -0.571 4.571 15 H 0.090 0.910 16 C -0.134 4.134 17 N -0.373 5.373 18 Si 0.735 3.265 19 H -0.185 1.185 20 H -0.199 1.199 21 H -0.199 1.199 22 C -0.114 4.114 23 N -0.120 5.120 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.103 0.897 27 H 0.194 0.806 28 H 0.162 0.838 29 H 0.143 0.857 30 H 0.171 0.829 31 H 0.229 0.771 32 H 0.083 0.917 33 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -13.426 5.708 -1.793 14.699 hybrid contribution 0.988 -0.436 0.944 1.434 sum -12.438 5.272 -0.849 13.536 Atomic orbital electron populations 1.21802 0.74474 1.04281 1.03156 1.48335 1.06556 1.04035 1.57351 1.22537 0.90445 0.93080 1.00383 1.18476 0.91213 0.92322 1.17255 1.18732 0.92132 0.92831 0.96225 1.67441 1.29638 1.03762 1.16897 1.22281 0.89286 0.99112 1.00478 1.22002 0.98978 0.97501 0.99425 1.21883 0.99485 0.91413 0.99170 1.18807 0.94278 0.88015 0.93258 1.44159 1.16250 1.19145 1.54016 1.17081 0.81012 0.85510 0.81239 1.90640 1.30570 1.72459 1.51437 1.20059 0.97006 1.01623 1.38366 0.90996 1.25752 0.94705 0.99280 0.93690 1.70015 0.99911 1.35822 1.31566 0.86241 0.79402 0.81485 0.79333 1.18459 1.19881 1.19935 1.24274 0.95076 0.94319 0.97683 1.77265 1.01758 1.07755 1.25230 0.90954 0.89382 0.89675 0.80621 0.83810 0.85678 0.82931 0.77091 0.91653 0.79070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.86 11.45 59.85 0.69 1.55 16 2 N -0.38 -5.22 4.00 -67.85 -0.27 -5.49 16 3 C 0.08 1.19 11.38 -16.84 -0.19 1.00 16 4 C -0.18 -3.16 5.56 -105.34 -0.59 -3.74 16 5 C 0.14 2.74 6.69 -82.68 -0.55 2.19 16 6 N -0.47 -8.53 10.23 -9.56 -0.10 -8.62 16 7 C 0.05 0.79 11.17 -17.51 -0.20 0.59 16 8 C -0.16 -2.73 10.10 -39.41 -0.40 -3.13 16 9 C -0.09 -1.92 8.80 -39.09 -0.34 -2.26 16 10 C 0.16 3.39 6.30 -83.36 -0.52 2.87 16 11 N -0.69 -15.43 3.92 -12.17 -0.05 -15.48 16 12 C 0.54 14.58 7.42 -14.96 -0.11 14.46 16 13 O -0.57 -17.12 12.32 5.10 0.06 -17.05 16 14 C -0.54 -14.21 9.31 -37.56 -0.35 -14.56 16 15 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 16 C 0.09 2.34 5.50 -17.35 -0.10 2.24 16 17 N -0.75 -21.04 11.73 55.56 0.65 -20.39 16 18 Si 0.91 19.13 29.56 -169.99 -5.02 14.11 16 19 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 C 0.07 1.33 10.16 -17.03 -0.17 1.15 16 23 N -0.30 -5.06 12.53 30.82 0.39 -4.68 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 27 H 0.18 2.02 8.06 -52.49 -0.42 1.60 16 28 H 0.14 1.83 8.06 -52.48 -0.42 1.41 16 29 H 0.13 1.78 8.06 -52.48 -0.42 1.35 16 30 H 0.15 3.59 6.29 -52.48 -0.33 3.26 16 31 H 0.39 7.97 7.11 -40.82 -0.29 7.68 16 32 H 0.27 6.94 8.29 -40.82 -0.34 6.60 16 33 H 0.19 3.62 7.27 -52.49 -0.38 3.24 16 LS Contribution 294.85 15.07 4.44 4.44 Total: -1.00 -33.54 294.85 -5.82 -39.36 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -3.08 Total: 11.44 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -2.84 Total: 2.37 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.62 Total: -54.67 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: 0.06 Total: -17.05 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -33.54 -5.82 -39.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642076772.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.326 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds