Wall clock time and date at job start Mon Mar 30 2020 01:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34701 * 125.86004 * 2 1 4 4 C 1.36720 * 107.57857 * 180.02562 * 3 2 1 5 5 C 1.48143 * 126.26813 * 179.97438 * 4 3 2 6 6 N 1.32647 * 119.80467 * 325.00984 * 5 4 3 7 7 C 1.31763 * 121.69470 * 179.97438 * 6 5 4 8 8 C 1.38441 * 121.10214 * 359.97438 * 7 6 5 9 9 C 1.38505 * 119.48659 * 0.29843 * 8 7 6 10 10 C 1.39300 * 118.44055 * 359.46108 * 9 8 7 11 11 N 1.39172 * 120.55590 * 180.26523 * 10 9 8 12 12 C 1.34775 * 120.00098 * 325.37383 * 11 10 9 13 13 O 1.21794 * 120.00044 * 4.48156 * 12 11 10 14 14 C 1.41656 * 120.00183 * 184.47509 * 12 11 10 15 15 H 1.08001 * 119.99752 * 0.02562 * 14 12 11 16 16 C 1.40140 * 120.00282 * 180.02562 * 14 12 11 17 17 N 1.30635 * 119.99881 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00348 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46811 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47586 * 119.99689 * 18 16 14 21 21 H 1.48499 * 109.47172 * 240.00129 * 18 16 14 22 22 C 1.40993 * 107.47173 * 0.26567 * 4 3 2 23 23 N 1.30617 * 108.07069 * 359.55274 * 22 4 3 24 24 H 1.09000 * 109.47500 * 89.99611 * 1 2 3 25 25 H 1.08999 * 109.47269 * 209.99983 * 1 2 3 26 26 H 1.09008 * 109.47070 * 329.99653 * 1 2 3 27 27 H 1.07998 * 126.21154 * 0.02562 * 3 2 1 28 28 H 1.08003 * 119.44921 * 179.97438 * 7 6 5 29 29 H 1.08005 * 120.25183 * 180.02562 * 8 7 6 30 30 H 1.08004 * 120.77874 * 179.72220 * 9 8 7 31 31 H 0.97003 * 120.00121 * 145.37815 * 11 10 9 32 32 H 0.96997 * 119.99939 * 179.97438 * 17 16 14 33 33 H 1.07996 * 125.96594 * 179.71340 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2541 1.0917 0.0000 4 6 3.5523 0.6628 -0.0006 5 6 4.7591 1.5220 -0.0013 6 7 4.7489 2.6725 -0.6615 7 6 5.8009 3.4655 -0.6867 8 6 6.9667 3.1284 -0.0205 9 6 7.0313 1.9349 0.6793 10 6 5.9057 1.1144 0.6968 11 7 5.9202 -0.0918 1.3908 12 6 7.0522 -0.8208 1.4514 13 8 8.0829 -0.3864 0.9694 14 6 7.0432 -2.0923 2.0759 15 1 6.1292 -2.4777 2.5030 16 6 8.2204 -2.8501 2.1394 17 7 9.3260 -2.3837 1.6232 18 14 8.2084 -4.5270 2.9622 19 1 6.8422 -4.8226 3.4636 20 1 8.6102 -5.5641 1.9783 21 1 9.1633 -4.5272 4.0995 22 6 3.5324 -0.7470 -0.0072 23 7 2.2851 -1.1346 -0.0007 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.9217 2.1192 0.0004 28 1 5.7529 4.3941 -1.2363 29 1 7.8207 3.7890 -0.0500 30 1 7.9317 1.6492 1.2028 31 1 5.1156 -0.4080 1.8308 32 1 10.1409 -2.9081 1.6675 33 1 4.3974 -1.3935 -0.0136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001642076772.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:18 Heat of formation + Delta-G solvation = 57.036989 kcal Electronic energy + Delta-G solvation = -20075.410612 eV Core-core repulsion = 16909.066855 eV Total energy + Delta-G solvation = -3166.343756 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.29301 -41.01009 -39.28544 -35.70821 -34.70127 -34.20137 -33.16411 -31.62074 -30.09650 -28.47064 -27.55526 -24.56990 -24.16335 -21.96241 -21.75313 -21.47070 -19.53343 -18.39831 -17.75094 -17.68094 -16.72537 -16.62370 -16.32180 -15.87803 -15.47308 -14.94403 -14.86979 -14.49005 -14.40840 -13.87685 -13.75403 -13.49522 -13.36675 -13.23280 -12.93411 -12.77115 -12.70983 -12.00399 -11.78179 -11.44497 -10.95801 -10.68132 -10.52813 -10.40031 -9.83354 -9.47948 -8.57295 -8.39180 -7.02458 0.11478 0.51795 0.93194 1.37615 1.39401 1.56899 1.63934 1.76190 2.20231 2.36745 2.90508 3.06612 3.43384 3.61817 3.72694 3.99302 4.14093 4.20509 4.33793 4.37185 4.49330 4.61781 4.68394 4.74027 4.83907 4.99867 5.21156 5.33251 5.43458 5.52861 5.74708 5.87343 6.08118 6.11245 6.34744 6.63599 6.73435 7.14052 7.34342 8.36292 8.55005 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.015807 B = 0.006479 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.980666 B = 4320.513030 C = 5975.880766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.369 5.369 3 C 0.109 3.891 4 C -0.215 4.215 5 C 0.152 3.848 6 N -0.472 5.472 7 C 0.064 3.936 8 C -0.154 4.154 9 C -0.115 4.115 10 C 0.120 3.880 11 N -0.683 5.683 12 C 0.532 3.468 13 O -0.611 6.611 14 C -0.561 4.561 15 H 0.087 0.913 16 C 0.036 3.964 17 N -0.798 5.798 18 Si 0.997 3.003 19 H -0.249 1.249 20 H -0.267 1.267 21 H -0.265 1.265 22 C 0.059 3.941 23 N -0.320 5.320 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.121 0.879 27 H 0.213 0.787 28 H 0.193 0.807 29 H 0.157 0.843 30 H 0.117 0.883 31 H 0.401 0.599 32 H 0.279 0.721 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.387 7.277 -1.218 17.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.150 5.150 3 C -0.041 4.041 4 C -0.228 4.228 5 C 0.011 3.989 6 N -0.181 5.181 7 C -0.095 4.095 8 C -0.175 4.175 9 C -0.143 4.143 10 C 0.019 3.981 11 N -0.327 5.327 12 C 0.342 3.658 13 O -0.498 6.498 14 C -0.596 4.596 15 H 0.105 0.895 16 C -0.183 4.183 17 N -0.426 5.426 18 Si 0.816 3.184 19 H -0.172 1.172 20 H -0.192 1.192 21 H -0.190 1.190 22 C -0.128 4.128 23 N -0.141 5.141 24 H 0.109 0.891 25 H 0.112 0.888 26 H 0.139 0.861 27 H 0.229 0.771 28 H 0.210 0.790 29 H 0.175 0.825 30 H 0.135 0.865 31 H 0.237 0.763 32 H 0.090 0.910 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -16.209 6.693 -2.002 17.650 hybrid contribution 1.670 -0.560 0.921 1.987 sum -14.539 6.133 -1.082 15.817 Atomic orbital electron populations 1.22324 0.71036 1.06418 1.05049 1.48790 1.08307 1.02937 1.54948 1.22953 0.89188 0.94494 0.97487 1.18524 0.92106 0.91877 1.20268 1.18887 0.91877 0.93167 0.94977 1.67591 1.30318 1.03512 1.16672 1.23063 0.87927 0.99817 0.98700 1.22304 1.00716 0.96234 0.98204 1.21780 0.98396 0.93538 1.00610 1.19049 0.95753 0.88060 0.95213 1.43626 1.15145 1.19585 1.54372 1.17358 0.81468 0.86137 0.80861 1.90597 1.32447 1.73540 1.53264 1.20529 0.98130 1.02040 1.38891 0.89531 1.26939 0.93770 1.03791 0.93760 1.70152 1.01005 1.38128 1.33284 0.84977 0.80018 0.75259 0.78168 1.17171 1.19163 1.18977 1.23962 0.95071 0.94620 0.99122 1.77191 1.01615 1.09474 1.25828 0.89116 0.88807 0.86102 0.77092 0.79043 0.82521 0.86542 0.76264 0.91030 0.81447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.14 11.45 127.77 1.46 2.60 16 2 N -0.37 -9.13 4.00 -368.56 -1.47 -10.60 16 3 C 0.11 2.81 11.38 83.90 0.95 3.77 16 4 C -0.22 -7.42 5.56 -20.33 -0.11 -7.54 16 5 C 0.15 5.82 6.69 42.15 0.28 6.10 16 6 N -0.47 -16.16 10.23 -184.15 -1.88 -18.04 16 7 C 0.06 1.91 11.17 84.75 0.95 2.86 16 8 C -0.15 -5.17 10.10 22.38 0.23 -4.94 16 9 C -0.11 -5.05 8.80 22.59 0.20 -4.85 16 10 C 0.12 5.35 6.30 38.73 0.24 5.59 16 11 N -0.68 -32.39 3.92 -310.60 -1.22 -33.60 16 12 C 0.53 30.46 7.42 85.09 0.63 31.09 16 13 O -0.61 -39.49 12.32 -4.65 -0.06 -39.55 16 14 C -0.56 -31.07 9.31 23.58 0.22 -30.85 16 15 H 0.09 4.35 7.85 -2.91 -0.02 4.33 16 16 C 0.04 1.95 5.50 85.33 0.47 2.42 16 17 N -0.80 -47.04 11.73 21.85 0.26 -46.78 16 18 Si 1.00 39.87 29.56 68.60 2.03 41.89 16 19 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 20 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 21 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 22 C 0.06 2.16 10.16 85.55 0.87 3.03 16 23 N -0.32 -10.61 12.53 -56.39 -0.71 -11.32 16 24 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.12 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.21 3.87 8.06 -2.91 -0.02 3.85 16 28 H 0.19 3.89 8.06 -2.91 -0.02 3.86 16 29 H 0.16 4.14 8.06 -2.91 -0.02 4.12 16 30 H 0.12 5.96 6.29 -2.91 -0.02 5.94 16 31 H 0.40 17.24 7.11 -92.71 -0.66 16.58 16 32 H 0.28 14.81 8.29 -92.71 -0.77 14.04 16 33 H 0.17 6.84 7.27 -2.91 -0.02 6.82 16 Total: -1.00 -78.00 294.85 3.84 -74.16 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.50 Total: 34.55 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 6.39 Total: 9.29 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -5.03 Total: -120.35 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.06 Total: -39.55 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.89 kcal Total: -78.00 3.84 -74.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642076772.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.200 kcal (2) G-P(sol) polarization free energy of solvation -78.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds