Wall clock time and date at job start Mon Mar 30 2020 00:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86806 * 119.99677 * 2 1 4 4 H 1.48497 * 109.46784 * 275.00063 * 3 2 1 5 5 H 1.48504 * 109.46882 * 34.99763 * 3 2 1 6 6 H 1.48499 * 109.47056 * 154.99770 * 3 2 1 7 7 C 1.40020 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00366 * 174.91808 * 7 2 1 9 9 C 1.41337 * 120.00139 * 354.92133 * 7 2 1 10 10 C 1.40613 * 119.79479 * 185.68835 * 9 7 2 11 11 C 1.38301 * 119.13538 * 179.97438 * 10 9 7 12 12 C 1.38698 * 118.66469 * 359.97438 * 11 10 9 13 13 C 1.39629 * 119.50087 * 0.02562 * 12 11 10 14 14 N 1.39268 * 119.57494 * 179.97438 * 13 12 11 15 15 C 1.34782 * 120.00106 * 185.70275 * 14 13 12 16 16 O 1.21272 * 119.99787 * 354.84620 * 15 14 13 17 17 C 1.50693 * 120.00151 * 174.83851 * 15 14 13 18 18 C 1.50699 * 109.47325 * 180.02562 * 17 15 14 19 19 C 1.34668 * 126.59125 * 275.05088 * 18 17 15 20 20 N 1.34128 * 108.01899 * 179.74088 * 19 18 17 21 21 C 1.30499 * 109.25765 * 0.36792 * 20 19 18 22 22 N 1.35041 * 108.69847 * 359.62562 * 21 20 19 23 23 H 0.97007 * 126.39732 * 180.20500 * 22 21 20 24 24 N 1.31931 * 120.84996 * 0.26741 * 13 12 11 25 25 H 0.97003 * 120.00099 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.42884 * 359.97438 * 10 9 7 27 27 H 1.07997 * 120.66634 * 179.97438 * 11 10 9 28 28 H 1.08001 * 120.24714 * 180.02562 * 12 11 10 29 29 H 0.97000 * 120.00080 * 5.70523 * 14 13 12 30 30 H 1.09000 * 109.47012 * 60.00778 * 17 15 14 31 31 H 1.08998 * 109.47519 * 300.00383 * 17 15 14 32 32 H 1.07995 * 125.99270 * 359.91693 * 19 18 17 33 33 H 1.07998 * 125.65510 * 179.89480 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3832 2.1075 -1.3947 5 1 1.4955 2.6199 0.8030 6 1 3.5878 1.4121 0.5917 7 6 2.0076 -1.2126 0.0005 8 1 3.0845 -1.2145 -0.0823 9 6 1.3052 -2.4342 0.1094 10 6 2.0168 -3.6409 0.2303 11 6 1.3157 -4.8283 0.3365 12 6 -0.0706 -4.7862 0.3205 13 6 -0.7197 -3.5560 0.1980 14 7 -2.1116 -3.5119 0.1812 15 6 -2.7461 -2.3458 -0.0516 16 8 -2.1093 -1.3188 -0.1535 17 6 -4.2469 -2.3183 -0.1854 18 6 -4.7026 -0.9048 -0.4411 19 6 -4.9466 0.0403 0.4867 20 7 -5.3251 1.1586 -0.1498 21 6 -5.3324 0.9401 -1.4363 22 7 -4.9471 -0.3345 -1.6612 23 1 -4.8603 -0.7655 -2.5259 24 7 -0.0314 -2.4355 0.0922 25 1 -0.4850 0.8401 0.0004 26 1 3.0968 -3.6405 0.2400 27 1 1.8371 -5.7694 0.4300 28 1 -0.6436 -5.6980 0.4022 29 1 -2.6243 -4.3204 0.3371 30 1 -4.7005 -2.6856 0.7352 31 1 -4.5492 -2.9534 -1.0180 32 1 -4.8512 -0.0802 1.5556 33 1 -5.5981 1.6606 -2.1957 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001644420329.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:29 Heat of formation + Delta-G solvation = 58.480590 kcal Electronic energy + Delta-G solvation = -20278.296765 eV Core-core repulsion = 17112.015608 eV Total energy + Delta-G solvation = -3166.281157 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.89786 -40.84374 -39.18863 -35.90230 -34.81117 -33.69996 -32.74199 -32.17860 -30.85664 -28.12449 -27.25486 -23.96107 -23.12936 -22.43996 -21.86396 -20.91757 -19.64049 -18.70932 -17.84504 -17.62431 -16.49367 -16.25612 -16.18772 -15.72277 -15.42700 -15.12645 -14.91412 -14.47527 -14.28988 -14.10998 -13.89249 -13.64648 -13.03184 -12.78451 -12.72422 -12.57331 -12.31777 -11.79528 -11.46567 -10.94413 -10.91011 -10.84978 -10.59780 -9.88649 -9.30592 -9.03476 -8.78871 -8.06898 -6.42061 0.92968 1.11103 1.25949 1.36629 1.48053 1.51533 2.19384 2.19979 2.23690 2.34388 2.58543 2.98713 3.74415 3.99203 4.05435 4.12239 4.24895 4.42260 4.58552 4.65916 4.74242 4.78900 4.92072 4.96804 5.09687 5.27367 5.32796 5.69377 5.82777 5.88317 5.94021 6.15268 6.39335 6.61599 6.77238 6.87890 7.09162 7.17843 7.77106 8.35952 8.54324 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.007360 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.529519 B = 3803.259483 C = 5476.019658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.686 5.686 2 C 0.013 3.987 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.254 1.254 7 C -0.468 4.468 8 H 0.084 0.916 9 C 0.238 3.762 10 C -0.331 4.331 11 C -0.036 4.036 12 C -0.344 4.344 13 C 0.349 3.651 14 N -0.654 5.654 15 C 0.457 3.543 16 O -0.454 6.454 17 C -0.047 4.047 18 C 0.000 4.000 19 C -0.042 4.042 20 N -0.540 5.540 21 C 0.186 3.814 22 N -0.554 5.554 23 H 0.432 0.568 24 N -0.508 5.508 25 H 0.266 0.734 26 H 0.102 0.898 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.423 0.577 30 H 0.141 0.859 31 H 0.131 0.869 32 H 0.160 0.840 33 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.690 -5.190 -3.579 13.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.305 5.305 2 C -0.212 4.212 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.177 1.177 7 C -0.499 4.499 8 H 0.102 0.898 9 C 0.112 3.888 10 C -0.354 4.354 11 C -0.060 4.060 12 C -0.369 4.369 13 C 0.110 3.890 14 N -0.304 5.304 15 C 0.240 3.760 16 O -0.320 6.320 17 C -0.088 4.088 18 C -0.117 4.117 19 C -0.189 4.189 20 N -0.260 5.260 21 C -0.098 4.098 22 N -0.158 5.158 23 H 0.272 0.728 24 N -0.228 5.228 25 H 0.076 0.924 26 H 0.120 0.880 27 H 0.154 0.846 28 H 0.152 0.848 29 H 0.261 0.739 30 H 0.159 0.841 31 H 0.149 0.851 32 H 0.178 0.822 33 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -12.132 -2.686 -3.351 12.870 hybrid contribution 1.128 -1.278 -0.476 1.770 sum -11.004 -3.964 -3.827 12.306 Atomic orbital electron populations 1.70514 1.07087 1.27574 1.25346 1.26972 0.95982 1.03785 0.94495 0.85398 0.79389 0.77245 0.78956 1.19099 1.20219 1.17734 1.19860 0.94620 0.90596 1.44799 0.89829 1.18857 0.88091 0.93219 0.88637 1.21800 0.99140 0.94218 1.20234 1.21044 0.93786 0.97150 0.94018 1.21008 0.95056 0.96179 1.24658 1.19182 0.85533 0.90918 0.93391 1.43390 1.03285 1.12504 1.71254 1.21674 0.91163 0.84115 0.79029 1.91193 1.67121 1.31872 1.41807 1.20077 0.89870 0.91341 1.07537 1.20690 1.07896 0.97433 0.85635 1.22119 1.07129 0.89704 0.99927 1.70172 1.22048 1.27950 1.05810 1.25573 1.02806 0.86221 0.95244 1.43157 1.51342 1.12396 1.08945 0.72841 1.68680 1.07356 1.25345 1.21399 0.92368 0.88026 0.84634 0.84779 0.73905 0.84089 0.85109 0.82233 0.74188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -40.26 9.08 21.84 0.20 -40.06 16 2 C 0.01 0.73 5.49 85.29 0.47 1.20 16 3 Si 0.97 41.99 29.56 68.60 2.03 44.02 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.25 -10.47 7.11 99.48 0.71 -9.77 16 7 C -0.47 -27.02 9.13 23.47 0.21 -26.81 16 8 H 0.08 4.55 7.85 -2.91 -0.02 4.52 16 9 C 0.24 13.79 6.55 40.21 0.26 14.05 16 10 C -0.33 -16.77 9.83 22.86 0.22 -16.54 16 11 C -0.04 -1.54 10.15 22.39 0.23 -1.31 16 12 C -0.34 -14.21 9.95 22.72 0.23 -13.98 16 13 C 0.35 16.35 7.43 133.23 0.99 17.34 16 14 N -0.65 -23.05 5.38 -308.39 -1.66 -24.71 16 15 C 0.46 16.77 7.78 87.65 0.68 17.45 16 16 O -0.45 -22.65 11.87 -3.01 -0.04 -22.68 16 17 C -0.05 -1.07 6.26 29.10 0.18 -0.89 16 18 C 0.00 0.01 5.73 40.95 0.23 0.24 16 19 C -0.04 -1.38 11.79 83.52 0.98 -0.40 16 20 N -0.54 -18.26 11.25 -200.32 -2.25 -20.51 16 21 C 0.19 4.73 13.04 180.26 2.35 7.08 16 22 N -0.55 -13.13 6.15 -186.50 -1.15 -14.28 16 23 H 0.43 7.26 8.96 -92.70 -0.83 6.43 16 24 N -0.51 -28.94 5.74 -186.36 -1.07 -30.01 16 25 H 0.27 15.06 8.29 -92.71 -0.77 14.30 16 26 H 0.10 4.84 8.06 -2.91 -0.02 4.81 16 27 H 0.14 4.65 8.06 -2.91 -0.02 4.63 16 28 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 29 H 0.42 10.09 8.70 -92.71 -0.81 9.28 16 30 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.16 5.12 8.06 -2.91 -0.02 5.09 16 33 H 0.24 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -83.42 293.88 2.64 -80.78 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: -0.46 Total: 30.01 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 7.05 Total: -2.56 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -5.93 Total: -129.56 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.04 Total: -22.68 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -83.42 2.64 -80.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644420329.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.260 kcal (2) G-P(sol) polarization free energy of solvation -83.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds