Wall clock time and date at job start Mon Mar 30 2020 01:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30448 * 125.99097 * 2 1 4 4 N 1.39934 * 108.90484 * 180.13793 * 3 2 1 5 5 H 0.97002 * 125.75349 * 179.87235 * 4 3 2 6 6 C 1.34255 * 108.49807 * 359.61382 * 4 3 2 7 7 C 1.38078 * 107.41345 * 0.22425 * 6 4 3 8 8 C 1.47388 * 126.41594 * 179.97438 * 7 6 4 9 9 O 1.21604 * 119.99541 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00587 * 0.02562 * 8 7 6 11 11 C 1.39176 * 120.00104 * 174.84726 * 10 8 7 12 12 C 1.39698 * 119.57739 * 185.38205 * 11 10 8 13 13 C 1.38647 * 119.49706 * 179.70959 * 12 11 10 14 14 C 1.38353 * 118.66964 * 0.56097 * 13 12 11 15 15 C 1.40584 * 119.13318 * 359.72711 * 14 13 12 16 16 C 1.41327 * 119.78686 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99994 * 359.97438 * 16 15 14 18 18 C 1.40031 * 120.00114 * 179.97438 * 16 15 14 19 19 N 1.30740 * 119.99781 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99901 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47470 * 90.00307 * 20 18 16 22 22 H 1.48501 * 109.46862 * 209.99965 * 20 18 16 23 23 H 1.48502 * 109.47549 * 329.99615 * 20 18 16 24 24 N 1.31915 * 119.57890 * 5.66251 * 11 10 8 25 25 H 1.08997 * 109.47047 * 270.28392 * 1 2 3 26 26 H 1.08994 * 109.47066 * 30.28062 * 1 2 3 27 27 H 1.09001 * 109.46626 * 150.28228 * 1 2 3 28 28 H 1.07996 * 126.29585 * 180.24301 * 6 4 3 29 29 H 0.96999 * 119.99270 * 354.85767 * 10 8 7 30 30 H 1.07998 * 120.25036 * 0.02562 * 12 11 10 31 31 H 1.08000 * 120.66617 * 180.26721 * 13 12 11 32 32 H 1.07996 * 120.43791 * 179.75219 * 14 13 12 33 33 H 0.97002 * 120.00222 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6112 0.6443 -0.0032 5 1 4.3842 1.2303 -0.0056 6 6 3.6443 -0.6978 0.0034 7 6 2.3373 -1.1434 0.0056 8 6 1.8919 -2.5483 0.0121 9 8 0.7043 -2.8096 0.0129 10 7 2.8008 -3.5435 0.0169 11 6 2.3837 -4.8663 0.1312 12 6 3.3357 -5.8818 0.2490 13 6 2.9182 -7.1985 0.3688 14 6 1.5613 -7.4683 0.3561 15 6 0.6528 -6.4031 0.2285 16 6 -0.7363 -6.6629 0.2145 17 1 -1.0968 -7.6772 0.3013 18 6 -1.6452 -5.6051 0.0882 19 7 -1.2087 -4.3773 -0.0173 20 14 -3.4812 -5.9485 0.0704 21 1 -4.0063 -5.9061 1.4588 22 1 -4.1692 -4.9199 -0.7505 23 1 -3.7280 -7.2924 -0.5113 24 7 1.0945 -5.1458 0.1213 25 1 -0.3633 0.0051 1.0276 26 1 -0.3633 0.8874 -0.5182 27 1 -0.3632 -0.8925 -0.5095 28 1 4.5302 -1.3154 0.0067 29 1 3.7456 -3.3376 -0.0591 30 1 4.3889 -5.6426 0.2518 31 1 3.6379 -7.9980 0.4653 32 1 1.2046 -8.4839 0.4435 33 1 -1.8383 -3.6445 -0.1044 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650946143.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:15 Heat of formation + Delta-G solvation = 95.873367 kcal Electronic energy + Delta-G solvation = -20312.907994 eV Core-core repulsion = 17148.248309 eV Total energy + Delta-G solvation = -3164.659685 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.18688 -38.92114 -37.19340 -34.12009 -33.06247 -32.61604 -30.53938 -30.16102 -28.67368 -27.68469 -25.50272 -23.24837 -21.64682 -21.19923 -19.83371 -19.14550 -18.31188 -17.30692 -15.95711 -15.66549 -15.04266 -14.64571 -14.41394 -14.19956 -13.72623 -13.55433 -13.13501 -12.79397 -12.61715 -12.52805 -11.95997 -11.90784 -11.73180 -11.12351 -10.92231 -10.71385 -10.61634 -10.43458 -9.89853 -9.64511 -9.37735 -8.98731 -8.90842 -8.53211 -7.92412 -7.16681 -6.91150 -6.09557 -4.35914 1.69114 2.42506 2.78949 2.91272 3.18777 3.20715 3.22832 3.31075 3.96661 4.10083 4.30878 4.68718 4.77548 4.98571 5.33324 5.63137 5.67545 5.99047 6.07478 6.09002 6.16722 6.32199 6.51749 6.71384 6.77287 6.88238 6.88790 7.16547 7.28930 7.58309 7.65804 7.69672 7.84725 8.12662 8.25289 8.52168 8.79405 9.09230 9.37450 10.29083 10.52469 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.006835 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.576942 B = 4095.387112 C = 5665.683556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.134 3.866 3 N -0.309 5.309 4 N -0.469 5.469 5 H 0.439 0.561 6 C 0.087 3.913 7 C -0.267 4.267 8 C 0.545 3.455 9 O -0.406 6.406 10 N -0.664 5.664 11 C 0.375 3.625 12 C -0.359 4.359 13 C -0.036 4.036 14 C -0.307 4.307 15 C 0.271 3.729 16 C -0.425 4.425 17 H 0.082 0.918 18 C 0.058 3.942 19 N -0.653 5.653 20 Si 0.895 3.105 21 H -0.272 1.272 22 H -0.278 1.278 23 H -0.264 1.264 24 N -0.472 5.472 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.103 0.897 28 H 0.182 0.818 29 H 0.394 0.606 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.717 8.399 -0.311 11.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.034 4.034 3 N -0.133 5.133 4 N -0.174 5.174 5 H 0.283 0.717 6 C -0.065 4.065 7 C -0.283 4.283 8 C 0.328 3.672 9 O -0.270 6.270 10 N -0.310 5.310 11 C 0.136 3.864 12 C -0.385 4.385 13 C -0.060 4.060 14 C -0.330 4.330 15 C 0.146 3.854 16 C -0.455 4.455 17 H 0.100 0.900 18 C -0.171 4.171 19 N -0.271 5.271 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.188 1.188 24 N -0.191 5.191 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.122 0.878 28 H 0.199 0.801 29 H 0.227 0.773 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.079 10.430 -0.411 12.080 hybrid contribution 1.174 -1.293 0.087 1.749 sum 7.253 9.137 -0.324 11.671 Atomic orbital electron populations 1.20373 0.85581 1.04182 1.03590 1.22507 0.97421 0.88710 0.94739 1.77095 0.86276 1.22651 1.27304 1.46003 1.07654 1.05398 1.58355 0.71722 1.23138 0.99181 0.85499 0.98676 1.20778 0.91741 0.95688 1.20055 1.17528 0.87216 0.82687 0.79802 1.91188 1.13569 1.81848 1.40361 1.43234 1.09177 1.04686 1.73917 1.18577 0.91637 0.82584 0.93602 1.20477 0.96690 0.93383 1.27954 1.20545 0.95089 0.94590 0.95819 1.21618 0.93380 0.98895 1.19075 1.18387 0.93404 0.85753 0.87850 1.19573 0.89532 0.94384 1.42047 0.90036 1.26163 1.00332 0.95289 0.95333 1.70323 1.34830 0.98460 1.23513 0.86538 0.83457 0.79226 0.78852 1.19707 1.20290 1.18848 1.68721 1.09579 1.20467 1.20345 0.90303 0.91600 0.87820 0.80138 0.77270 0.89222 0.88734 0.88653 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 9.92 36.01 0.36 -0.85 16 2 C 0.13 2.18 7.26 -82.01 -0.60 1.58 16 3 N -0.31 -4.58 12.63 33.90 0.43 -4.15 16 4 N -0.47 -5.15 7.29 30.85 0.22 -4.92 16 5 H 0.44 2.97 8.96 -182.72 -1.64 1.33 16 6 C 0.09 1.00 11.52 -16.55 -0.19 0.81 16 7 C -0.27 -4.37 6.13 -105.06 -0.64 -5.01 16 8 C 0.55 11.21 7.77 -12.54 -0.10 11.11 16 9 O -0.41 -10.01 10.68 5.27 0.06 -9.96 16 10 N -0.66 -12.99 5.37 -12.39 -0.07 -13.06 16 11 C 0.37 9.09 7.42 -155.05 -1.15 7.94 16 12 C -0.36 -8.00 9.95 -38.89 -0.39 -8.39 16 13 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 14 C -0.31 -7.72 9.83 -38.65 -0.38 -8.10 16 15 C 0.27 7.60 6.55 -85.00 -0.56 7.04 16 16 C -0.42 -11.65 9.14 -37.74 -0.34 -11.99 16 17 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 18 C 0.06 1.52 5.50 -17.34 -0.10 1.42 16 19 N -0.65 -17.76 8.98 55.55 0.50 -17.26 16 20 Si 0.89 19.14 29.56 -169.99 -5.02 14.11 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 24 N -0.47 -13.18 5.74 -10.27 -0.06 -13.24 16 25 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.10 1.83 6.55 -51.93 -0.34 1.49 16 28 H 0.18 1.31 7.47 -52.49 -0.39 0.91 16 29 H 0.39 5.79 7.64 -40.82 -0.31 5.48 16 30 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 32 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.27 6.89 8.29 -40.82 -0.34 6.55 16 LS Contribution 289.93 15.07 4.37 4.37 Total: -1.00 -34.23 289.93 -8.40 -42.63 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -4.34 Total: 7.15 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -4.49 Total: -5.66 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 1.03 Total: -52.64 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.06 Total: -9.96 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.23 -8.40 -42.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650946143.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.507 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds