Wall clock time and date at job start Mon Mar 30 2020 01:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30448 * 125.99097 * 2 1 4 4 N 1.39934 * 108.90484 * 180.13793 * 3 2 1 5 5 H 0.97002 * 125.75349 * 179.87235 * 4 3 2 6 6 C 1.34255 * 108.49807 * 359.61382 * 4 3 2 7 7 C 1.38078 * 107.41345 * 0.22425 * 6 4 3 8 8 C 1.47388 * 126.41594 * 179.97438 * 7 6 4 9 9 O 1.21604 * 119.99541 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00587 * 0.02562 * 8 7 6 11 11 C 1.39176 * 120.00104 * 174.84726 * 10 8 7 12 12 C 1.39698 * 119.57739 * 185.38205 * 11 10 8 13 13 C 1.38647 * 119.49706 * 179.70959 * 12 11 10 14 14 C 1.38353 * 118.66964 * 0.56097 * 13 12 11 15 15 C 1.40584 * 119.13318 * 359.72711 * 14 13 12 16 16 C 1.41327 * 119.78686 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99994 * 359.97438 * 16 15 14 18 18 C 1.40031 * 120.00114 * 179.97438 * 16 15 14 19 19 N 1.30740 * 119.99781 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99901 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47470 * 90.00307 * 20 18 16 22 22 H 1.48501 * 109.46862 * 209.99965 * 20 18 16 23 23 H 1.48502 * 109.47549 * 329.99615 * 20 18 16 24 24 N 1.31915 * 119.57890 * 5.66251 * 11 10 8 25 25 H 1.08997 * 109.47047 * 270.28392 * 1 2 3 26 26 H 1.08994 * 109.47066 * 30.28062 * 1 2 3 27 27 H 1.09001 * 109.46626 * 150.28228 * 1 2 3 28 28 H 1.07996 * 126.29585 * 180.24301 * 6 4 3 29 29 H 0.96999 * 119.99270 * 354.85767 * 10 8 7 30 30 H 1.07998 * 120.25036 * 0.02562 * 12 11 10 31 31 H 1.08000 * 120.66617 * 180.26721 * 13 12 11 32 32 H 1.07996 * 120.43791 * 179.75219 * 14 13 12 33 33 H 0.97002 * 120.00222 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6112 0.6443 -0.0032 5 1 4.3842 1.2303 -0.0056 6 6 3.6443 -0.6978 0.0034 7 6 2.3373 -1.1434 0.0056 8 6 1.8919 -2.5483 0.0121 9 8 0.7043 -2.8096 0.0129 10 7 2.8008 -3.5435 0.0169 11 6 2.3837 -4.8663 0.1312 12 6 3.3357 -5.8818 0.2490 13 6 2.9182 -7.1985 0.3688 14 6 1.5613 -7.4683 0.3561 15 6 0.6528 -6.4031 0.2285 16 6 -0.7363 -6.6629 0.2145 17 1 -1.0968 -7.6772 0.3013 18 6 -1.6452 -5.6051 0.0882 19 7 -1.2087 -4.3773 -0.0173 20 14 -3.4812 -5.9485 0.0704 21 1 -4.0063 -5.9061 1.4588 22 1 -4.1692 -4.9199 -0.7505 23 1 -3.7280 -7.2924 -0.5113 24 7 1.0945 -5.1458 0.1213 25 1 -0.3633 0.0051 1.0276 26 1 -0.3633 0.8874 -0.5182 27 1 -0.3632 -0.8925 -0.5095 28 1 4.5302 -1.3154 0.0067 29 1 3.7456 -3.3376 -0.0591 30 1 4.3889 -5.6426 0.2518 31 1 3.6379 -7.9980 0.4653 32 1 1.2046 -8.4839 0.4435 33 1 -1.8383 -3.6445 -0.1044 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650946143.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:15 Heat of formation + Delta-G solvation = 72.022342 kcal Electronic energy + Delta-G solvation = -20313.942252 eV Core-core repulsion = 17148.248309 eV Total energy + Delta-G solvation = -3165.693943 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.31110 -40.60523 -38.91953 -35.87131 -34.81523 -33.82422 -32.21771 -31.76338 -30.29993 -28.88664 -27.38949 -24.71659 -23.30681 -22.82972 -21.17743 -20.51884 -19.76707 -18.87121 -17.72870 -17.06050 -16.39749 -16.26500 -16.20052 -15.53030 -15.25574 -15.20941 -14.70441 -14.48057 -13.86206 -13.78603 -13.70145 -13.64157 -12.90530 -12.84607 -12.68110 -12.50507 -12.26534 -11.86512 -11.72136 -11.43956 -10.79877 -10.56161 -10.44310 -9.83500 -9.70894 -9.01380 -8.72582 -7.98149 -6.35615 0.62445 0.99313 1.22330 1.40766 1.43431 1.55368 1.58449 1.88043 2.30902 2.47497 2.76445 3.11663 3.56991 3.85336 4.12805 4.23632 4.32256 4.49817 4.56730 4.78260 4.82240 4.89561 5.01144 5.03318 5.05970 5.15450 5.35347 5.54428 5.74938 5.93812 5.99009 6.21964 6.34170 6.44793 6.57915 6.83424 6.95797 7.15031 7.83858 8.42727 8.63573 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.006835 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.576942 B = 4095.387112 C = 5665.683556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.116 3.884 3 N -0.325 5.325 4 N -0.445 5.445 5 H 0.461 0.539 6 C 0.131 3.869 7 C -0.310 4.310 8 C 0.539 3.461 9 O -0.457 6.457 10 N -0.650 5.650 11 C 0.353 3.647 12 C -0.346 4.346 13 C -0.035 4.035 14 C -0.333 4.333 15 C 0.238 3.762 16 C -0.467 4.467 17 H 0.083 0.917 18 C 0.013 3.987 19 N -0.685 5.685 20 Si 0.971 3.029 21 H -0.267 1.267 22 H -0.272 1.272 23 H -0.258 1.258 24 N -0.507 5.507 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.234 0.766 29 H 0.418 0.582 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.101 0.899 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.459 9.146 -0.280 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.050 4.050 3 N -0.149 5.149 4 N -0.152 5.152 5 H 0.310 0.690 6 C -0.023 4.023 7 C -0.325 4.325 8 C 0.324 3.676 9 O -0.324 6.324 10 N -0.299 5.299 11 C 0.114 3.886 12 C -0.371 4.371 13 C -0.059 4.059 14 C -0.356 4.356 15 C 0.112 3.888 16 C -0.498 4.498 17 H 0.101 0.899 18 C -0.213 4.213 19 N -0.304 5.304 20 Si 0.792 3.208 21 H -0.192 1.192 22 H -0.197 1.197 23 H -0.182 1.182 24 N -0.227 5.227 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.250 0.750 29 H 0.256 0.744 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.119 0.881 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.906 11.229 -0.383 14.337 hybrid contribution 0.615 -1.461 0.081 1.588 sum 9.521 9.767 -0.302 13.643 Atomic orbital electron populations 1.20234 0.86202 1.03513 1.03272 1.22564 0.97698 0.89339 0.95448 1.77046 0.87766 1.22258 1.27839 1.46039 1.07283 1.05803 1.56064 0.69009 1.23707 0.98811 0.85718 0.94082 1.20457 0.94075 0.93295 1.24667 1.18136 0.86795 0.84247 0.78405 1.91183 1.15747 1.82885 1.42627 1.43134 1.10508 1.02967 1.73288 1.19111 0.91281 0.84949 0.93308 1.20976 0.98543 0.92688 1.24913 1.21024 0.94715 0.96136 0.94018 1.21792 0.94641 0.98641 1.20544 1.18858 0.94471 0.86876 0.88585 1.19875 0.90439 0.94968 1.44540 0.89904 1.26974 1.04906 0.94840 0.94610 1.70510 1.36189 0.99119 1.24567 0.85384 0.77310 0.79162 0.78901 1.19241 1.19721 1.18189 1.68681 1.11897 1.20729 1.21401 0.90535 0.89762 0.90802 0.74982 0.74420 0.84764 0.84658 0.88065 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.37 9.92 71.24 0.71 -1.67 16 2 C 0.12 3.75 7.26 43.52 0.32 4.07 16 3 N -0.32 -8.97 12.63 -46.66 -0.59 -9.56 16 4 N -0.45 -8.01 7.29 -56.30 -0.41 -8.42 16 5 H 0.46 4.04 8.96 -213.42 -1.91 2.13 16 6 C 0.13 2.48 11.52 84.28 0.97 3.45 16 7 C -0.31 -9.73 6.13 -20.15 -0.12 -9.86 16 8 C 0.54 22.31 7.77 86.65 0.67 22.98 16 9 O -0.46 -23.71 10.68 -4.04 -0.04 -23.75 16 10 N -0.65 -24.56 5.37 -311.37 -1.67 -26.23 16 11 C 0.35 16.92 7.42 133.29 0.99 17.91 16 12 C -0.35 -14.46 9.95 22.72 0.23 -14.24 16 13 C -0.03 -1.50 10.15 22.39 0.23 -1.27 16 14 C -0.33 -16.95 9.83 22.87 0.22 -16.72 16 15 C 0.24 13.82 6.55 40.19 0.26 14.08 16 16 C -0.47 -26.89 9.14 23.46 0.21 -26.67 16 17 H 0.08 4.49 7.85 -2.91 -0.02 4.46 16 18 C 0.01 0.69 5.50 85.29 0.47 1.16 16 19 N -0.68 -39.40 8.98 21.84 0.20 -39.21 16 20 Si 0.97 41.07 29.56 68.60 2.03 43.10 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 23 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 24 N -0.51 -29.23 5.74 -186.40 -1.07 -30.29 16 25 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.07 2.84 6.55 -2.39 -0.02 2.82 16 28 H 0.23 1.83 7.47 -2.91 -0.02 1.81 16 29 H 0.42 10.79 7.64 -92.71 -0.71 10.08 16 30 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 31 H 0.14 4.66 8.06 -2.91 -0.02 4.64 16 32 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 33 H 0.27 14.64 8.29 -92.71 -0.77 13.88 16 Total: -1.00 -80.19 289.93 2.16 -78.02 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -1.44 Total: 23.12 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 5.16 Total: -6.78 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -3.54 Total: -113.71 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.04 Total: -23.75 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -80.19 2.16 -78.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650946143.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.047 kcal (2) G-P(sol) polarization free energy of solvation -80.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds