Wall clock time and date at job start Mon Mar 30 2020 00:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00152 * 2 1 4 4 H 1.48499 * 109.47276 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47518 * 300.00301 * 3 2 1 6 6 H 1.48506 * 109.46994 * 60.00222 * 3 2 1 7 7 C 1.37885 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00159 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99729 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47001 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00243 * 180.02562 * 10 9 7 12 12 O 1.21585 * 120.00000 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00164 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00041 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47130 * 180.02562 * 14 13 11 16 16 N 1.46497 * 109.47130 * 179.97438 * 15 14 13 17 17 C 1.47057 * 125.40952 * 90.00073 * 16 15 14 18 18 C 1.54105 * 103.99235 * 179.97438 * 17 16 15 19 19 N 1.47394 * 103.70056 * 0.10684 * 18 17 16 20 20 C 1.33947 * 109.21036 * 359.88525 * 19 18 17 21 21 S 1.71206 * 123.04055 * 180.02562 * 20 19 18 22 22 H 0.96997 * 120.00233 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47373 * 60.00978 * 9 7 2 24 24 H 1.09001 * 109.47248 * 300.00336 * 9 7 2 25 25 H 0.96998 * 119.99697 * 0.02562 * 10 9 7 26 26 H 0.97005 * 120.00099 * 0.02562 * 13 11 10 27 27 H 1.09000 * 109.47188 * 59.99765 * 14 13 11 28 28 H 1.09002 * 109.47370 * 299.99891 * 14 13 11 29 29 H 1.09000 * 109.47340 * 59.99781 * 15 14 13 30 30 H 1.09001 * 109.47326 * 300.00351 * 15 14 13 31 31 H 1.09002 * 110.54831 * 298.59477 * 17 16 15 32 32 H 1.08997 * 110.54826 * 61.25951 * 17 16 15 33 33 H 1.08996 * 110.55034 * 118.66113 * 18 17 16 34 34 H 1.09001 * 110.54910 * 241.47819 * 18 17 16 35 35 H 0.97000 * 125.37712 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6128 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5584 -5.1056 -0.0011 13 7 2.6296 -5.9078 -0.0016 14 6 2.1412 -7.2890 -0.0016 15 6 3.3312 -8.2507 -0.0016 16 7 2.8429 -9.6319 -0.0010 17 6 2.5585 -10.4356 -1.1992 18 6 2.0811 -11.7882 -0.6358 19 7 2.1452 -11.6003 0.8247 20 6 2.5836 -10.3630 1.0910 21 16 2.7921 -9.7691 2.6832 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5568 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 3.1566 -3.4355 -0.0002 26 1 3.5833 -5.7306 -0.0012 27 1 1.5353 -7.4602 -0.8913 28 1 1.5361 -7.4605 0.8886 29 1 3.9368 -8.0794 0.8884 30 1 3.9368 -8.0794 -0.8915 31 1 1.7723 -9.9707 -1.7940 32 1 3.4615 -10.5660 -1.7955 33 1 1.0584 -11.9945 -0.9512 34 1 2.7487 -12.5906 -0.9500 35 1 1.9087 -12.2677 1.4877 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001681910633.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:42 Heat of formation + Delta-G solvation = -31.061644 kcal Electronic energy + Delta-G solvation = -18069.192728 eV Core-core repulsion = 15034.472679 eV Total energy + Delta-G solvation = -3034.720049 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 272.105 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.96474 -40.84934 -37.08500 -36.06249 -34.92316 -34.24339 -31.63842 -30.45381 -28.77912 -25.37802 -24.17694 -24.14490 -22.63511 -21.93500 -20.24654 -19.52254 -18.10153 -17.77076 -17.19417 -17.10511 -16.61312 -16.41679 -16.00792 -15.65801 -15.35895 -15.09266 -14.78994 -14.07428 -13.98360 -13.95560 -13.61506 -13.38153 -12.86739 -12.75333 -12.69158 -12.51981 -12.26907 -12.20041 -11.43309 -11.31576 -10.80524 -10.32194 -9.89739 -9.60346 -9.08987 -8.95488 -8.26996 -6.43256 0.28800 0.69537 1.36814 1.45381 1.46763 1.60119 2.02805 2.23855 2.38415 2.43614 3.08190 3.23548 3.59036 3.59659 3.68879 4.01844 4.16120 4.31012 4.50945 4.61161 4.74776 4.82481 4.85835 5.09261 5.28184 5.28463 5.47935 5.51153 5.68171 5.70149 5.86433 6.15792 6.25354 6.68885 7.25820 7.31816 7.71705 8.85769 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.042225 B = 0.002919 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.947557 B = 9590.251897 C = 9770.226047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.252 1.252 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.285 3.715 10 N -0.721 5.721 11 C 0.693 3.307 12 O -0.651 6.651 13 N -0.725 5.725 14 C 0.134 3.866 15 C 0.135 3.865 16 N -0.560 5.560 17 C 0.064 3.936 18 C 0.075 3.925 19 N -0.665 5.665 20 C 0.582 3.418 21 S -0.770 6.770 22 H 0.269 0.731 23 H -0.012 1.012 24 H -0.018 1.018 25 H 0.406 0.594 26 H 0.415 0.585 27 H 0.066 0.934 28 H 0.034 0.966 29 H 0.098 0.902 30 H 0.143 0.857 31 H 0.111 0.889 32 H 0.132 0.868 33 H 0.119 0.881 34 H 0.132 0.868 35 H 0.449 0.551 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.062 -26.185 -9.014 29.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.591 4.591 8 H 0.103 0.897 9 C 0.161 3.839 10 N -0.374 5.374 11 C 0.392 3.608 12 O -0.534 6.534 13 N -0.384 5.384 14 C 0.007 3.993 15 C 0.013 3.987 16 N -0.269 5.269 17 C -0.059 4.059 18 C -0.050 4.050 19 N -0.299 5.299 20 C 0.216 3.784 21 S -0.641 6.641 22 H 0.077 0.923 23 H 0.006 0.994 24 H 0.000 1.000 25 H 0.242 0.758 26 H 0.252 0.748 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.117 0.883 30 H 0.161 0.839 31 H 0.129 0.871 32 H 0.150 0.850 33 H 0.137 0.863 34 H 0.150 0.850 35 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 9.985 -25.867 -8.316 28.947 hybrid contribution 0.153 0.548 -0.005 0.569 sum 10.139 -25.319 -8.321 28.514 Atomic orbital electron populations 1.70152 1.08321 1.28497 1.50101 1.26088 0.95791 1.03945 0.93917 0.85077 0.79099 0.77186 0.77618 1.17524 1.20317 1.20681 1.21639 0.94377 0.90371 1.52668 0.89656 1.18422 0.88142 0.83395 0.93924 1.45257 1.10994 1.03644 1.77536 1.16261 0.85000 0.81652 0.77886 1.90844 1.16946 1.84967 1.60603 1.44526 1.09294 1.03971 1.80603 1.21297 0.97101 0.79649 1.01244 1.21712 0.94727 0.75044 1.07209 1.47241 1.61367 1.13322 1.05016 1.23406 1.05404 0.89466 0.87593 1.23337 1.06336 0.98417 0.76959 1.45491 1.62324 1.11164 1.10950 1.21702 0.80208 0.85033 0.91468 1.94019 1.79866 1.82283 1.07930 0.92262 0.99388 1.00039 0.75796 0.74803 0.91594 0.94716 0.88348 0.83943 0.87106 0.84992 0.86265 0.85031 0.70538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.99 42.76 29.54 68.60 2.03 44.79 16 4 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.55 -30.49 9.28 25.60 0.24 -30.25 16 8 H 0.09 4.23 7.60 -2.91 -0.02 4.21 16 9 C 0.28 16.10 5.43 85.63 0.46 16.56 16 10 N -0.72 -31.57 5.55 -482.29 -2.68 -34.24 16 11 C 0.69 29.58 8.57 179.06 1.53 31.11 16 12 O -0.65 -34.91 16.34 -3.98 -0.07 -34.98 16 13 N -0.73 -20.69 5.56 -478.55 -2.66 -23.35 16 14 C 0.13 3.35 6.00 86.38 0.52 3.87 16 15 C 0.14 2.05 5.93 86.38 0.51 2.56 16 16 N -0.56 -7.46 2.96 -707.83 -2.09 -9.56 16 17 C 0.06 0.14 7.67 86.65 0.66 0.81 16 18 C 0.07 -0.01 8.08 86.58 0.70 0.69 16 19 N -0.66 -6.54 6.38 -347.71 -2.22 -8.76 16 20 C 0.58 11.37 7.78 179.57 1.40 12.77 16 21 S -0.77 -26.23 29.88 -56.49 -1.69 -27.92 16 22 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 23 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 24 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 25 H 0.41 14.41 8.34 -92.71 -0.77 13.64 16 26 H 0.41 8.30 8.49 -92.70 -0.79 7.51 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.10 1.91 7.34 -2.39 -0.02 1.89 16 30 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.13 -0.46 8.14 -2.39 -0.02 -0.48 16 33 H 0.12 -0.38 8.14 -2.39 -0.02 -0.40 16 34 H 0.13 -0.76 8.14 -2.39 -0.02 -0.78 16 35 H 0.45 3.66 8.96 -92.71 -0.83 2.83 16 Total: -1.00 -95.26 317.32 -3.86 -99.12 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -1.25 Total: 13.02 kcal Atomic # 6 Polarization: 32.20 SS G_CDS: 6.49 Total: 38.69 kcal Atomic # 7 Polarization: -123.36 SS G_CDS: -9.36 Total: -132.72 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -0.07 Total: -34.98 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: -26.23 SS G_CDS: -1.69 Total: -27.92 kcal Total: -95.26 -3.86 -99.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681910633.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.057 kcal (2) G-P(sol) polarization free energy of solvation -95.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds