Wall clock time and date at job start Mon Mar 30 2020 01:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47173 * 2 1 4 4 H 1.08995 * 109.47239 * 305.37379 * 3 2 1 5 5 C 1.50699 * 109.47406 * 185.37350 * 3 2 1 6 6 O 1.21291 * 120.00381 * 269.51640 * 5 3 2 7 7 N 1.34773 * 120.00021 * 89.50773 * 5 3 2 8 8 C 1.37099 * 120.00196 * 176.40792 * 7 5 3 9 9 H 1.07998 * 120.00174 * 133.44252 * 8 7 5 10 10 C 1.38946 * 119.99745 * 313.16628 * 8 7 5 11 11 N 1.31416 * 120.00131 * 165.37677 * 10 8 7 12 12 Si 1.86803 * 120.00183 * 345.37237 * 10 8 7 13 13 H 1.48499 * 109.47150 * 93.84859 * 12 10 8 14 14 H 1.48494 * 109.47046 * 213.85009 * 12 10 8 15 15 H 1.48504 * 109.47010 * 333.84796 * 12 10 8 16 16 C 1.46502 * 119.99898 * 356.40934 * 7 5 3 17 17 C 1.47197 * 109.47398 * 274.12334 * 16 7 5 18 18 N 3.55243 * 110.34222 * 251.32068 * 2 1 3 19 19 C 1.50696 * 109.47042 * 65.37535 * 3 2 1 20 20 C 1.38236 * 120.00213 * 59.72729 * 19 3 2 21 21 C 1.38232 * 119.99969 * 179.78836 * 20 19 3 22 22 C 1.38236 * 120.00090 * 0.44383 * 21 20 19 23 23 C 1.38232 * 119.99969 * 359.81018 * 22 21 20 24 24 C 1.38228 * 120.00093 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.47433 * 59.99727 * 1 2 3 26 26 H 1.08999 * 109.47031 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47384 * 299.99796 * 1 2 3 28 28 H 1.08997 * 109.47566 * 240.00265 * 2 1 3 29 29 H 1.09005 * 109.47370 * 119.99762 * 2 1 3 30 30 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 31 31 H 1.09002 * 109.47249 * 34.12514 * 16 7 5 32 32 H 1.09009 * 109.46874 * 154.12209 * 16 7 5 33 33 H 1.07995 * 119.99925 * 359.97438 * 20 19 3 34 34 H 1.08004 * 120.00188 * 180.27001 * 21 20 19 35 35 H 1.08007 * 119.99994 * 179.83502 * 22 21 20 36 36 H 1.08007 * 120.00021 * 180.02562 * 23 22 21 37 37 H 1.07999 * 120.00359 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6002 1.9834 -0.8379 5 6 3.5411 1.4447 -0.1331 6 8 4.2380 1.4216 0.8594 7 7 4.1093 1.4721 -1.3549 8 6 5.4728 1.5484 -1.4752 9 1 5.9919 0.8949 -2.1607 10 6 6.1864 2.4705 -0.7195 11 7 7.4914 2.3611 -0.6100 12 14 5.2907 3.8659 0.1408 13 1 4.9728 3.4650 1.5349 14 1 6.1554 5.0730 0.1578 15 1 4.0319 4.1690 -0.5864 16 6 3.2698 1.4203 -2.5544 17 6 2.9848 0.0166 -2.8937 18 7 2.7649 -1.0668 -3.1554 19 6 1.6493 2.1135 1.2916 20 6 2.0875 1.5994 2.4977 21 6 1.7327 2.2174 3.6821 22 6 0.9321 3.3441 3.6611 23 6 0.4896 3.8551 2.4554 24 6 0.8480 3.2398 1.2706 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 7.9895 3.0046 -0.0822 31 1 2.3336 1.9457 -2.3657 32 1 3.7924 1.8958 -3.3844 33 1 2.7095 0.7167 2.5143 34 1 2.0786 1.8183 4.6242 35 1 0.6527 3.8254 4.5868 36 1 -0.1356 4.7357 2.4389 37 1 0.5019 3.6387 0.3286 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002739591.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:01 Heat of formation + Delta-G solvation = 10.471253 kcal Electronic energy + Delta-G solvation = -21339.987391 eV Core-core repulsion = 18275.164736 eV Total energy + Delta-G solvation = -3064.822655 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.56126 -39.71812 -37.78562 -36.34112 -35.91594 -34.13965 -31.77682 -31.49988 -29.42631 -28.67548 -25.94856 -23.87535 -23.14084 -22.52511 -20.86143 -19.64588 -18.44995 -17.83864 -17.68393 -17.06890 -16.48758 -15.87794 -15.75536 -15.35295 -15.16271 -14.86774 -14.80077 -14.44971 -14.20902 -14.10335 -13.78209 -13.53947 -13.37944 -13.35250 -12.95793 -12.76856 -12.52730 -12.47801 -12.19941 -12.02695 -11.95704 -11.68093 -11.52531 -10.84290 -10.42088 -9.82912 -9.70175 -9.52889 -8.41939 -6.27000 0.48075 0.59717 1.25867 1.37456 1.52826 1.56067 1.80714 1.91141 2.39711 2.68805 2.97726 3.08086 3.22594 3.65288 3.79339 3.99940 4.06419 4.19979 4.24039 4.35902 4.37424 4.51776 4.54410 4.69588 4.71091 4.77174 4.90689 5.04686 5.14824 5.20492 5.23780 5.37073 5.61884 5.68011 5.69021 5.78605 5.86363 6.19515 6.54945 6.70140 6.84888 7.24078 7.76861 8.67501 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014771 B = 0.009865 C = 0.006735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.134201 B = 2837.592665 C = 4156.671048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C -0.064 4.064 4 H 0.129 0.871 5 C 0.463 3.537 6 O -0.567 6.567 7 N -0.479 5.479 8 C -0.340 4.340 9 H 0.066 0.934 10 C 0.047 3.953 11 N -0.913 5.913 12 Si 0.948 3.052 13 H -0.287 1.287 14 H -0.304 1.304 15 H -0.234 1.234 16 C 0.185 3.815 17 C 0.220 3.780 18 N -0.475 5.475 19 C -0.083 4.083 20 C -0.105 4.105 21 C -0.142 4.142 22 C -0.126 4.126 23 C -0.127 4.127 24 C -0.120 4.120 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.273 0.727 31 H 0.157 0.843 32 H 0.151 0.849 33 H 0.097 0.903 34 H 0.126 0.874 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.896 5.381 1.694 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C -0.085 4.085 4 H 0.147 0.853 5 C 0.254 3.746 6 O -0.449 6.449 7 N -0.202 5.202 8 C -0.467 4.467 9 H 0.083 0.917 10 C -0.157 4.157 11 N -0.551 5.551 12 Si 0.776 3.224 13 H -0.214 1.214 14 H -0.233 1.233 15 H -0.157 1.157 16 C 0.059 3.941 17 C -0.099 4.099 18 N -0.154 5.154 19 C -0.083 4.083 20 C -0.124 4.124 21 C -0.160 4.160 22 C -0.144 4.144 23 C -0.145 4.145 24 C -0.138 4.138 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.174 0.826 32 H 0.169 0.831 33 H 0.115 0.885 34 H 0.144 0.856 35 H 0.163 0.837 36 H 0.171 0.829 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.682 3.815 1.842 19.157 hybrid contribution 1.094 0.394 0.710 1.362 sum -17.588 4.209 2.552 18.264 Atomic orbital electron populations 1.21688 0.92270 1.02368 1.03104 1.21449 0.98510 0.92831 1.01586 1.20482 0.90779 0.99096 0.98155 0.85294 1.21330 0.91064 0.78438 0.83742 1.90561 1.65158 1.51375 1.37770 1.43702 1.05523 1.67334 1.03685 1.18641 0.80628 1.19562 1.27873 0.91652 1.25939 0.95194 0.99130 0.95450 1.69808 1.08562 1.36754 1.39931 0.85710 0.79687 0.76976 0.80077 1.21438 1.23265 1.15662 1.19723 0.99410 0.83535 0.91427 1.30376 0.91491 0.96135 0.91869 1.81111 1.11044 1.13031 1.10193 1.19524 0.98654 0.96851 0.93318 1.21070 0.97757 1.00281 0.93260 1.21352 0.99398 0.97436 0.97848 1.21460 0.97610 0.95828 0.99458 1.21462 1.00564 1.00595 0.91865 1.21395 0.97787 0.94424 1.00190 0.90465 0.92173 0.92144 0.92486 0.93376 0.91787 0.82627 0.83116 0.88461 0.85594 0.83710 0.82893 0.83197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.73 71.98 0.70 -2.20 16 2 C -0.11 -3.06 5.26 30.59 0.16 -2.90 16 3 C -0.06 -1.97 1.75 -12.29 -0.02 -1.99 16 4 H 0.13 2.89 5.71 -2.39 -0.01 2.87 16 5 C 0.46 19.79 4.69 87.66 0.41 20.20 16 6 O -0.57 -29.97 10.79 -3.06 -0.03 -30.00 16 7 N -0.48 -20.14 2.08 -645.41 -1.34 -21.48 16 8 C -0.34 -18.12 9.60 84.04 0.81 -17.31 16 9 H 0.07 3.80 8.06 -2.91 -0.02 3.78 16 10 C 0.05 2.69 4.96 84.92 0.42 3.11 16 11 N -0.91 -55.92 13.96 21.66 0.30 -55.62 16 12 Si 0.95 46.94 24.82 68.60 1.70 48.64 16 13 H -0.29 -15.76 6.50 99.48 0.65 -15.12 16 14 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16 15 H -0.23 -9.85 7.11 99.48 0.71 -9.14 16 16 C 0.18 5.17 5.67 84.57 0.48 5.65 16 17 C 0.22 6.94 13.56 89.44 1.21 8.15 16 18 N -0.47 -16.96 18.21 20.00 0.36 -16.59 16 19 C -0.08 -2.59 3.68 -19.87 -0.07 -2.67 16 20 C -0.11 -3.67 7.87 22.27 0.18 -3.50 16 21 C -0.14 -4.19 10.05 22.27 0.22 -3.97 16 22 C -0.13 -3.00 10.05 22.27 0.22 -2.77 16 23 C -0.13 -2.80 10.05 22.27 0.22 -2.58 16 24 C -0.12 -2.96 9.67 22.27 0.22 -2.75 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.27 7.39 -2.38 -0.02 1.26 16 28 H 0.06 1.77 5.39 -2.39 -0.01 1.75 16 29 H 0.05 1.59 7.20 -2.38 -0.02 1.57 16 30 H 0.27 15.86 8.31 -92.71 -0.77 15.08 16 31 H 0.16 2.76 5.91 -2.39 -0.01 2.75 16 32 H 0.15 3.55 8.01 -2.38 -0.02 3.53 16 33 H 0.10 3.87 6.76 -2.91 -0.02 3.85 16 34 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 35 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 37 H 0.15 2.68 7.95 -2.91 -0.02 2.65 16 Total: -1.00 -76.59 308.28 7.18 -69.42 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 1.02 Total: 11.16 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 5.16 Total: -5.52 kcal Atomic # 7 Polarization: -93.02 SS G_CDS: -0.67 Total: -93.69 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.03 Total: -30.00 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.70 Total: 48.64 kcal Total: -76.59 7.18 -69.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002739591.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.888 kcal (2) G-P(sol) polarization free energy of solvation -76.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds