Wall clock time and date at job start Mon Mar 30 2020 01:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.47038 * 2 1 4 4 C 1.35907 * 116.99803 * 179.97438 * 3 2 1 5 5 C 1.38806 * 119.93320 * 180.02562 * 4 3 2 6 6 C 1.37935 * 120.06858 * 180.02562 * 5 4 3 7 7 C 1.39366 * 119.93554 * 359.97438 * 6 5 4 8 8 C 1.48381 * 120.07278 * 180.02562 * 7 6 5 9 9 C 1.35849 * 126.15354 * 180.26697 * 8 7 6 10 10 N 1.36752 * 106.68349 * 180.13672 * 9 8 7 11 11 C 1.46506 * 126.28969 * 179.87560 * 10 9 8 12 12 C 1.50703 * 109.47289 * 269.71450 * 11 10 9 13 13 H 1.07994 * 119.99399 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99789 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00144 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99733 * 179.97438 * 14 12 11 17 17 H 1.48490 * 109.47181 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46716 * 120.00463 * 16 14 12 19 19 H 1.48500 * 109.46999 * 240.00161 * 16 14 12 20 20 C 1.35093 * 107.42014 * 359.61459 * 10 9 8 21 21 N 1.30369 * 108.99792 * 0.24396 * 20 10 9 22 22 C 1.39370 * 119.86185 * 0.28238 * 7 6 5 23 23 C 1.37943 * 119.93324 * 359.42035 * 22 7 6 24 24 H 1.08998 * 109.47018 * 59.99967 * 1 2 3 25 25 H 1.09004 * 109.47014 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46874 * 300.00094 * 1 2 3 27 27 H 1.09000 * 109.46874 * 239.99906 * 2 1 3 28 28 H 1.08998 * 109.47018 * 120.00033 * 2 1 3 29 29 H 1.08002 * 119.96462 * 359.97438 * 5 4 3 30 30 H 1.08003 * 120.03465 * 180.02562 * 6 5 4 31 31 H 1.08000 * 126.65113 * 359.97438 * 9 8 7 32 32 H 1.09001 * 109.47060 * 29.71900 * 11 10 9 33 33 H 1.09004 * 109.47073 * 149.71389 * 11 10 9 34 34 H 0.96997 * 119.99752 * 179.97438 * 15 14 12 35 35 H 1.08000 * 125.50682 * 180.21369 * 20 10 9 36 36 H 1.07999 * 120.03325 * 179.72689 * 22 7 6 37 37 H 1.07997 * 119.96884 * 180.29519 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 0.0005 5 6 3.8828 2.8086 0.0011 6 6 5.2498 2.9925 0.0011 7 6 6.1001 1.8883 0.0011 8 6 7.5711 2.0827 0.0017 9 6 8.5093 1.1002 -0.0034 10 7 9.7279 1.7209 0.0025 11 6 11.0365 1.0623 0.0027 12 6 11.4850 0.8362 1.4236 13 1 10.8577 1.1512 2.2443 14 6 12.6955 0.2263 1.6756 15 7 13.4591 -0.1577 0.6760 16 14 13.2517 -0.0533 3.4369 17 1 12.2201 0.4662 4.3701 18 1 13.4429 -1.5073 3.6705 19 1 14.5340 0.6584 3.6699 20 6 9.5032 3.0530 0.0023 21 7 8.2171 3.2665 0.0018 22 6 5.5659 0.6011 -0.0049 23 6 4.1979 0.4235 0.0013 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.2234 3.6640 0.0007 30 1 5.6609 3.9913 0.0020 31 1 8.3279 0.0356 -0.0082 32 1 10.9611 0.1041 -0.5114 33 1 11.7613 1.6941 -0.5109 34 1 14.3109 -0.5864 0.8534 35 1 10.2657 3.8178 0.0029 36 1 6.2223 -0.2565 -0.0094 37 1 3.7834 -0.5737 0.0015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013116398.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:14 Heat of formation + Delta-G solvation = 31.614626 kcal Electronic energy + Delta-G solvation = -19258.963143 eV Core-core repulsion = 16195.057334 eV Total energy + Delta-G solvation = -3063.905809 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.24790 -39.92649 -37.38562 -34.11345 -32.43146 -31.95657 -30.80566 -30.26504 -28.03460 -26.79733 -24.10908 -23.52221 -22.41751 -21.75156 -19.95985 -19.59083 -18.23238 -16.94781 -16.47288 -16.19323 -15.64477 -15.10004 -14.58829 -14.31336 -14.00052 -13.56432 -13.44445 -13.41571 -13.15721 -12.86011 -12.68216 -12.52239 -11.99356 -11.81842 -11.78644 -11.53139 -11.16856 -10.97172 -10.85993 -10.66133 -10.39996 -10.02000 -9.34986 -8.86677 -8.79399 -8.76675 -8.42809 -7.13313 -6.39385 -4.48299 1.42658 1.54787 2.93061 3.12579 3.16909 3.21322 3.27033 3.59880 3.86935 4.21249 4.35850 4.70444 4.72697 4.91407 4.95556 4.95933 5.04459 5.09655 5.27516 5.49241 5.53886 5.57753 5.69134 5.75927 5.77254 5.90120 6.08996 6.25735 6.32480 6.45819 6.55083 6.83345 6.91347 6.93628 7.23958 7.44113 7.51866 7.56112 7.73084 8.03522 8.59512 8.75297 9.20454 10.68597 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029777 B = 0.003227 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.091427 B = 8675.026231 C = 9173.800798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.320 6.320 4 C 0.111 3.889 5 C -0.151 4.151 6 C -0.064 4.064 7 C -0.010 4.010 8 C 0.004 3.996 9 C -0.025 4.025 10 N -0.423 5.423 11 C 0.230 3.770 12 C -0.545 4.545 13 H 0.067 0.933 14 C 0.066 3.934 15 N -0.889 5.889 16 Si 0.907 3.093 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.279 1.279 20 C 0.182 3.818 21 N -0.502 5.502 22 C -0.080 4.080 23 C -0.204 4.204 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.127 0.873 30 H 0.136 0.864 31 H 0.165 0.835 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.269 0.731 35 H 0.198 0.802 36 H 0.125 0.875 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.362 -0.300 -2.308 18.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.235 6.235 4 C 0.066 3.934 5 C -0.169 4.169 6 C -0.083 4.083 7 C -0.012 4.012 8 C -0.124 4.124 9 C -0.164 4.164 10 N -0.099 5.099 11 C 0.111 3.889 12 C -0.583 4.583 13 H 0.085 0.915 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.734 3.266 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.205 1.205 20 C -0.102 4.102 21 N -0.221 5.221 22 C -0.099 4.099 23 C -0.223 4.223 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.145 0.855 30 H 0.154 0.846 31 H 0.183 0.817 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.214 0.786 36 H 0.143 0.857 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.491 0.456 -2.359 18.646 hybrid contribution 1.110 -1.355 0.938 1.987 sum -17.381 -0.898 -1.420 17.462 Atomic orbital electron populations 1.21770 0.93028 1.02664 1.03397 1.22727 0.95586 0.82421 1.01370 1.86032 1.19482 1.28848 1.89124 1.18973 0.81833 0.94231 0.98318 1.20334 0.95078 0.94511 1.07000 1.21040 0.91254 0.99434 0.96548 1.17829 0.89616 0.92699 1.01015 1.18879 0.91744 0.89471 1.12353 1.22548 0.84641 0.98916 1.10278 1.46051 1.08598 1.07184 1.48099 1.19850 0.75824 0.94032 0.99241 1.21340 1.04614 1.41118 0.91196 0.91495 1.24958 0.95914 0.94582 0.98303 1.69926 1.12077 1.39512 1.31127 0.86281 0.78762 0.78127 0.83458 1.19452 1.20585 1.20524 1.24668 0.94061 0.85283 1.06158 1.70143 1.03859 1.26824 1.21276 1.20897 0.94088 0.96550 0.98354 1.21037 0.94017 0.97703 1.09530 0.91624 0.90548 0.91608 0.92156 0.92137 0.85514 0.84604 0.81745 0.93285 0.92951 0.92164 0.78556 0.85670 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.63 16 2 C 0.05 0.48 5.46 37.16 0.20 0.69 16 3 O -0.32 -3.98 10.13 -19.45 -0.20 -4.18 16 4 C 0.11 1.52 6.69 -39.16 -0.26 1.26 16 5 C -0.15 -2.11 9.97 -39.48 -0.39 -2.51 16 6 C -0.06 -1.00 9.69 -39.27 -0.38 -1.38 16 7 C -0.01 -0.17 5.88 -104.88 -0.62 -0.79 16 8 C 0.00 0.08 6.86 -83.22 -0.57 -0.49 16 9 C -0.02 -0.49 10.95 -16.21 -0.18 -0.66 16 10 N -0.42 -9.03 2.73 -119.58 -0.33 -9.35 16 11 C 0.23 5.42 5.89 -5.19 -0.03 5.38 16 12 C -0.54 -14.19 9.39 -34.44 -0.32 -14.51 16 13 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 14 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -24.11 13.29 55.43 0.74 -23.38 16 16 Si 0.91 20.35 29.54 -169.99 -5.02 15.33 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 C 0.18 3.65 12.54 -90.44 -1.13 2.52 16 21 N -0.50 -10.26 10.93 -11.18 -0.12 -10.38 16 22 C -0.08 -1.17 9.56 -39.27 -0.38 -1.54 16 23 C -0.20 -2.67 9.02 -39.48 -0.36 -3.03 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 28 H 0.06 0.50 7.65 -51.93 -0.40 0.10 16 29 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 30 H 0.14 2.11 7.86 -52.48 -0.41 1.70 16 31 H 0.17 2.86 7.29 -52.49 -0.38 2.48 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.20 3.37 8.06 -52.49 -0.42 2.95 16 36 H 0.13 1.65 7.01 -52.49 -0.37 1.28 16 37 H 0.12 1.30 6.28 -52.49 -0.33 0.97 16 LS Contribution 322.26 15.07 4.86 4.86 Total: -1.00 -29.26 322.26 -9.00 -38.26 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -4.79 Total: 2.90 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -4.13 Total: -14.05 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.29 Total: -43.11 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.20 Total: -4.18 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.26 -9.00 -38.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013116398.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.872 kcal (2) G-P(sol) polarization free energy of solvation -29.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds