Wall clock time and date at job start Mon Mar 30 2020 01:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.47038 * 2 1 4 4 C 1.35907 * 116.99803 * 179.97438 * 3 2 1 5 5 C 1.38806 * 119.93320 * 180.02562 * 4 3 2 6 6 C 1.37935 * 120.06858 * 180.02562 * 5 4 3 7 7 C 1.39366 * 119.93554 * 359.97438 * 6 5 4 8 8 C 1.48381 * 120.07278 * 180.02562 * 7 6 5 9 9 C 1.35849 * 126.15354 * 180.26697 * 8 7 6 10 10 N 1.36752 * 106.68349 * 180.13672 * 9 8 7 11 11 C 1.46506 * 126.28969 * 179.87560 * 10 9 8 12 12 C 1.50703 * 109.47289 * 269.71450 * 11 10 9 13 13 H 1.07994 * 119.99399 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99789 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00144 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99733 * 179.97438 * 14 12 11 17 17 H 1.48490 * 109.47181 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46716 * 120.00463 * 16 14 12 19 19 H 1.48500 * 109.46999 * 240.00161 * 16 14 12 20 20 C 1.35093 * 107.42014 * 359.61459 * 10 9 8 21 21 N 1.30369 * 108.99792 * 0.24396 * 20 10 9 22 22 C 1.39370 * 119.86185 * 0.28238 * 7 6 5 23 23 C 1.37943 * 119.93324 * 359.42035 * 22 7 6 24 24 H 1.08998 * 109.47018 * 59.99967 * 1 2 3 25 25 H 1.09004 * 109.47014 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46874 * 300.00094 * 1 2 3 27 27 H 1.09000 * 109.46874 * 239.99906 * 2 1 3 28 28 H 1.08998 * 109.47018 * 120.00033 * 2 1 3 29 29 H 1.08002 * 119.96462 * 359.97438 * 5 4 3 30 30 H 1.08003 * 120.03465 * 180.02562 * 6 5 4 31 31 H 1.08000 * 126.65113 * 359.97438 * 9 8 7 32 32 H 1.09001 * 109.47060 * 29.71900 * 11 10 9 33 33 H 1.09004 * 109.47073 * 149.71389 * 11 10 9 34 34 H 0.96997 * 119.99752 * 179.97438 * 15 14 12 35 35 H 1.08000 * 125.50682 * 180.21369 * 20 10 9 36 36 H 1.07999 * 120.03325 * 179.72689 * 22 7 6 37 37 H 1.07997 * 119.96884 * 180.29519 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 0.0005 5 6 3.8828 2.8086 0.0011 6 6 5.2498 2.9925 0.0011 7 6 6.1001 1.8883 0.0011 8 6 7.5711 2.0827 0.0017 9 6 8.5093 1.1002 -0.0034 10 7 9.7279 1.7209 0.0025 11 6 11.0365 1.0623 0.0027 12 6 11.4850 0.8362 1.4236 13 1 10.8577 1.1512 2.2443 14 6 12.6955 0.2263 1.6756 15 7 13.4591 -0.1577 0.6760 16 14 13.2517 -0.0533 3.4369 17 1 12.2201 0.4662 4.3701 18 1 13.4429 -1.5073 3.6705 19 1 14.5340 0.6584 3.6699 20 6 9.5032 3.0530 0.0023 21 7 8.2171 3.2665 0.0018 22 6 5.5659 0.6011 -0.0049 23 6 4.1979 0.4235 0.0013 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.2234 3.6640 0.0007 30 1 5.6609 3.9913 0.0020 31 1 8.3279 0.0356 -0.0082 32 1 10.9611 0.1041 -0.5114 33 1 11.7613 1.6941 -0.5109 34 1 14.3109 -0.5864 0.8534 35 1 10.2657 3.8178 0.0029 36 1 6.2223 -0.2565 -0.0094 37 1 3.7834 -0.5737 0.0015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013116398.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:13 Heat of formation + Delta-G solvation = 18.123767 kcal Electronic energy + Delta-G solvation = -19259.548151 eV Core-core repulsion = 16195.057334 eV Total energy + Delta-G solvation = -3064.490817 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.79831 -40.94559 -38.44451 -35.93284 -34.04555 -32.98433 -31.86092 -31.47140 -29.68674 -28.35898 -25.30280 -24.95198 -23.73219 -22.80321 -21.45333 -20.96558 -19.22823 -18.87561 -18.08087 -16.97943 -16.68236 -16.60715 -16.17208 -15.89832 -15.26580 -14.86524 -14.68417 -14.44219 -14.33376 -14.20349 -14.07031 -13.65666 -13.36646 -13.17355 -12.89606 -12.75887 -12.66803 -12.55305 -12.30530 -11.92208 -11.67020 -11.60902 -10.95249 -10.73000 -10.42822 -9.94362 -9.82341 -8.50840 -8.35054 -6.54730 0.22134 0.44096 1.35665 1.36322 1.42721 1.52120 2.18841 2.22208 2.30530 2.37445 2.94429 3.07728 3.56206 3.87508 3.98201 4.11052 4.11280 4.20988 4.27461 4.39147 4.43827 4.47182 4.57699 4.65736 4.79969 4.90228 4.95034 4.98752 5.12115 5.22859 5.28175 5.39196 5.51220 5.58140 5.75683 5.76868 5.80894 5.96415 6.34472 6.51018 6.62431 7.16705 7.20562 8.69378 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029777 B = 0.003227 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.091427 B = 8675.026231 C = 9173.800798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.330 6.330 4 C 0.116 3.884 5 C -0.156 4.156 6 C -0.070 4.070 7 C -0.044 4.044 8 C 0.006 3.994 9 C -0.044 4.044 10 N -0.435 5.435 11 C 0.245 3.755 12 C -0.558 4.558 13 H 0.054 0.946 14 C 0.024 3.976 15 N -0.917 5.917 16 Si 0.970 3.030 17 H -0.273 1.273 18 H -0.273 1.273 19 H -0.272 1.272 20 C 0.173 3.827 21 N -0.516 5.516 22 C -0.078 4.078 23 C -0.200 4.200 24 H 0.063 0.937 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.143 0.857 30 H 0.129 0.871 31 H 0.183 0.817 32 H 0.038 0.962 33 H 0.044 0.956 34 H 0.273 0.727 35 H 0.218 0.782 36 H 0.138 0.862 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.938 -1.267 -1.686 20.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.245 6.245 4 C 0.071 3.929 5 C -0.175 4.175 6 C -0.088 4.088 7 C -0.045 4.045 8 C -0.122 4.122 9 C -0.181 4.181 10 N -0.113 5.113 11 C 0.125 3.875 12 C -0.596 4.596 13 H 0.072 0.928 14 C -0.178 4.178 15 N -0.555 5.555 16 Si 0.794 3.206 17 H -0.197 1.197 18 H -0.198 1.198 19 H -0.198 1.198 20 C -0.110 4.110 21 N -0.235 5.235 22 C -0.097 4.097 23 C -0.219 4.219 24 H 0.082 0.918 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.161 0.839 30 H 0.147 0.853 31 H 0.200 0.800 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.235 0.765 36 H 0.155 0.845 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -20.100 -0.512 -1.745 20.182 hybrid contribution 1.406 -1.059 0.710 1.898 sum -18.693 -1.571 -1.035 18.788 Atomic orbital electron populations 1.21803 0.91438 1.04135 1.03174 1.23085 0.96925 0.80874 1.02347 1.86045 1.18501 1.31268 1.88663 1.19118 0.82713 0.94209 0.96890 1.20488 0.94571 0.95657 1.06754 1.21019 0.91997 0.98884 0.96941 1.17934 0.88377 0.94207 1.03988 1.19327 0.93105 0.88958 1.10836 1.22909 0.84141 0.99991 1.11057 1.45951 1.08238 1.07672 1.49393 1.19468 0.76791 0.93405 0.97863 1.21493 1.04825 1.41388 0.91894 0.92813 1.25714 0.95873 0.94166 1.02020 1.70000 1.12527 1.40012 1.32928 0.85322 0.78246 0.78267 0.78769 1.19734 1.19808 1.19760 1.25187 0.94657 0.85381 1.05760 1.70175 1.04028 1.27455 1.21885 1.21077 0.95092 0.96001 0.97552 1.21312 0.93202 0.99039 1.08317 0.91817 0.88226 0.91885 0.91058 0.91180 0.83920 0.85333 0.80034 0.94438 0.93755 0.91740 0.76513 0.84469 0.82844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 71.98 0.74 -0.84 16 2 C 0.04 0.62 5.46 71.98 0.39 1.02 16 3 O -0.33 -7.42 10.13 -92.50 -0.94 -8.36 16 4 C 0.12 2.94 6.69 22.54 0.15 3.09 16 5 C -0.16 -4.20 9.97 22.33 0.22 -3.97 16 6 C -0.07 -2.16 9.69 22.47 0.22 -1.95 16 7 C -0.04 -1.47 5.88 -20.03 -0.12 -1.58 16 8 C 0.01 0.24 6.86 40.83 0.28 0.52 16 9 C -0.04 -1.75 10.95 83.37 0.91 -0.83 16 10 N -0.43 -18.85 2.73 -532.25 -1.45 -20.30 16 11 C 0.24 11.78 5.89 85.63 0.50 12.28 16 12 C -0.56 -29.33 9.39 25.60 0.24 -29.09 16 13 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 14 C 0.02 1.24 5.46 84.65 0.46 1.70 16 15 N -0.92 -49.72 13.29 21.45 0.28 -49.44 16 16 Si 0.97 41.43 29.54 68.60 2.03 43.45 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 20 C 0.17 7.04 12.54 180.28 2.26 9.30 16 21 N -0.52 -21.33 10.93 -189.29 -2.07 -23.40 16 22 C -0.08 -2.18 9.56 22.47 0.21 -1.97 16 23 C -0.20 -4.75 9.02 22.34 0.20 -4.55 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 28 H 0.07 0.92 7.65 -2.39 -0.02 0.90 16 29 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 30 H 0.13 4.07 7.86 -2.91 -0.02 4.05 16 31 H 0.18 6.31 7.29 -2.91 -0.02 6.28 16 32 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.04 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 35 H 0.22 7.49 8.06 -2.91 -0.02 7.47 16 36 H 0.14 3.40 7.01 -2.91 -0.02 3.38 16 37 H 0.15 2.67 6.28 -2.91 -0.02 2.66 16 Total: -1.00 -61.74 322.26 5.60 -56.14 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 1.06 Total: 18.79 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 6.68 Total: -16.89 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -3.24 Total: -93.14 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.94 Total: -8.36 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Total: -61.74 5.60 -56.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013116398.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.266 kcal (2) G-P(sol) polarization free energy of solvation -61.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds