Wall clock time and date at job start Mon Mar 30 2020 01:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36339 * 125.63725 * 2 1 4 4 C 1.34848 * 108.22075 * 179.97438 * 3 2 1 5 5 C 1.40893 * 107.41835 * 359.77107 * 4 3 2 6 6 C 1.34851 * 107.41084 * 0.37844 * 5 4 3 7 7 C 1.50706 * 125.88525 * 179.88271 * 6 5 4 8 8 N 1.46497 * 109.46796 * 94.69523 * 7 6 5 9 9 C 1.39784 * 120.00271 * 180.02562 * 8 7 6 10 10 C 1.38943 * 120.00943 * 179.97438 * 9 8 7 11 11 C 1.38014 * 119.99201 * 180.23154 * 10 9 8 12 12 C 1.38893 * 120.00778 * 359.49313 * 11 10 9 13 13 O 1.35796 * 119.99965 * 180.23531 * 12 11 10 14 14 C 1.34809 * 117.00833 * 174.73324 * 13 12 11 15 15 H 1.08003 * 119.99228 * 5.05017 * 14 13 12 16 16 C 1.38614 * 120.00609 * 185.05631 * 14 13 12 17 17 N 1.31577 * 120.00552 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99808 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47318 * 89.99693 * 18 16 14 20 20 H 1.48503 * 109.47031 * 210.00098 * 18 16 14 21 21 H 1.48503 * 109.46909 * 330.00027 * 18 16 14 22 22 C 1.38900 * 120.00885 * 0.50251 * 12 11 10 23 23 C 1.38006 * 120.00954 * 359.75620 * 22 12 11 24 24 H 1.08995 * 109.46943 * 270.02163 * 1 2 3 25 25 H 1.09004 * 109.47272 * 30.02056 * 1 2 3 26 26 H 1.09001 * 109.47068 * 150.02057 * 1 2 3 27 27 H 1.08001 * 125.88874 * 359.94793 * 3 2 1 28 28 H 1.08003 * 126.29427 * 180.02562 * 4 3 2 29 29 H 1.07993 * 126.29393 * 180.24304 * 5 4 3 30 30 H 1.08996 * 109.46927 * 334.69613 * 7 6 5 31 31 H 1.08994 * 109.46892 * 214.69029 * 7 6 5 32 32 H 0.97000 * 120.00235 * 359.97438 * 8 7 6 33 33 H 1.08000 * 120.00621 * 359.95602 * 10 9 8 34 34 H 1.08008 * 119.99318 * 179.72823 * 11 10 9 35 35 H 0.96994 * 120.00456 * 180.02562 * 17 16 14 36 36 H 1.08001 * 119.99605 * 179.72547 * 22 12 11 37 37 H 1.07997 * 120.00422 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5460 0.7044 0.0006 5 6 3.5461 -0.7045 0.0063 6 6 2.2594 -1.1081 0.0005 7 6 1.7819 -2.5375 0.0011 8 7 1.5129 -2.9618 1.3772 9 6 1.0568 -4.2583 1.6324 10 6 0.8021 -4.6611 2.9375 11 6 0.3564 -5.9428 3.1894 12 6 0.1524 -6.8266 2.1376 13 8 -0.2908 -8.0861 2.3853 14 6 -0.5723 -8.8574 1.3161 15 1 -0.3653 -8.4954 0.3198 16 6 -1.1274 -10.1148 1.4953 17 7 -1.4026 -10.8673 0.4516 18 14 -1.4849 -10.7409 3.2186 19 1 -2.8624 -10.3495 3.6117 20 1 -1.3650 -12.2209 3.2422 21 1 -0.5114 -10.1501 4.1717 22 6 0.4068 -6.4241 0.8328 23 6 0.8576 -5.1443 0.5806 24 1 -0.3633 0.0004 1.0276 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.9171 2.1324 -0.0008 28 1 4.4166 1.3437 0.0011 29 1 4.4165 -1.3437 0.0119 30 1 2.5502 -3.1773 -0.4328 31 1 0.8684 -2.6156 -0.5883 32 1 1.6519 -2.3434 2.1114 33 1 0.9571 -3.9728 3.7552 34 1 0.1626 -6.2573 4.2044 35 1 -1.7914 -11.7470 0.5770 36 1 0.2523 -7.1129 0.0154 37 1 1.0558 -4.8316 -0.4339 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020360451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:31 Heat of formation + Delta-G solvation = 59.752734 kcal Electronic energy + Delta-G solvation = -19470.718761 eV Core-core repulsion = 16408.033111 eV Total energy + Delta-G solvation = -3062.685650 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.39776 -39.13698 -37.21865 -34.55746 -33.03448 -32.22362 -30.42029 -30.15620 -27.41823 -26.56502 -25.21066 -24.63585 -21.98297 -20.75004 -20.65269 -19.38368 -17.95880 -17.50277 -16.96157 -16.13954 -15.54073 -15.01052 -14.62179 -14.45673 -13.93937 -13.72348 -13.57767 -13.42258 -13.27466 -12.85538 -12.55713 -12.50780 -12.24085 -12.20032 -12.05946 -11.91623 -11.51735 -11.39279 -10.82497 -10.62680 -10.09487 -9.29255 -9.22750 -8.77341 -8.54982 -8.27336 -8.25946 -6.51284 -6.30487 -3.94984 1.97116 2.11390 2.46412 2.75624 2.83237 3.28351 3.31703 3.47252 3.97936 4.32747 4.54588 4.59183 4.60187 4.89728 4.90513 5.02509 5.14427 5.20271 5.24658 5.44591 5.52082 5.59848 5.63521 5.66421 6.09451 6.13974 6.19116 6.20848 6.33255 6.74801 6.84832 6.92477 6.96456 7.05300 7.16515 7.33661 7.46073 7.81376 7.88497 8.10867 8.20597 9.06170 9.72256 10.78116 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.045070 B = 0.003148 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.109757 B = 8891.846501 C = 9038.452359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.443 5.443 3 C -0.014 4.014 4 C -0.204 4.204 5 C -0.179 4.179 6 C 0.000 4.000 7 C 0.204 3.796 8 N -0.755 5.755 9 C 0.132 3.868 10 C -0.146 4.146 11 C -0.147 4.147 12 C 0.117 3.883 13 O -0.228 6.228 14 C -0.384 4.384 15 H 0.103 0.897 16 C 0.060 3.940 17 N -0.888 5.888 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.260 1.260 22 C -0.176 4.176 23 C -0.146 4.146 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.160 0.840 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.392 0.608 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.277 0.723 36 H 0.133 0.867 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.127 21.896 -0.394 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.118 5.118 3 C -0.144 4.144 4 C -0.229 4.229 5 C -0.205 4.205 6 C -0.111 4.111 7 C 0.079 3.921 8 N -0.392 5.392 9 C 0.034 3.966 10 C -0.169 4.169 11 C -0.167 4.167 12 C 0.066 3.934 13 O -0.134 6.134 14 C -0.460 4.460 15 H 0.120 0.880 16 C -0.142 4.142 17 N -0.528 5.528 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.184 1.184 22 C -0.196 4.196 23 C -0.169 4.169 24 H 0.092 0.908 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.178 0.822 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.226 0.774 33 H 0.129 0.871 34 H 0.135 0.865 35 H 0.087 0.913 36 H 0.151 0.849 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.612 21.527 -0.466 22.021 hybrid contribution -0.167 -0.035 0.703 0.723 sum 4.445 21.492 0.237 21.949 Atomic orbital electron populations 1.22028 0.77292 1.04284 1.03470 1.43963 1.06158 1.05729 1.55986 1.21816 0.90633 0.91278 1.10685 1.20890 0.95922 0.95101 1.10965 1.20779 0.95281 0.95102 1.09335 1.20379 0.90515 0.88450 1.11747 1.19454 0.99582 0.87634 0.85439 1.44306 1.77232 1.11688 1.05926 1.17446 1.00638 0.85147 0.93399 1.20095 1.06480 0.96101 0.94186 1.19991 1.06493 0.92554 0.97686 1.18962 0.96260 0.85475 0.92725 1.83571 1.75194 1.19498 1.35161 1.20701 1.41561 0.97399 0.86337 0.87956 1.24421 0.95807 0.95065 0.98923 1.69657 1.42630 1.10986 1.29476 0.86188 0.79474 0.77448 0.83788 1.20093 1.21010 1.18435 1.21119 1.04746 0.96488 0.97253 1.20333 1.05841 0.93782 0.96910 0.90819 0.90009 0.89623 0.82246 0.84742 0.84623 0.90794 0.92624 0.77442 0.87095 0.86500 0.91306 0.84918 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 10.92 59.85 0.65 1.16 16 2 N -0.44 -4.33 3.15 -119.90 -0.38 -4.71 16 3 C -0.01 -0.12 11.43 -16.75 -0.19 -0.32 16 4 C -0.20 -2.07 10.86 -39.78 -0.43 -2.50 16 5 C -0.18 -2.03 10.77 -39.78 -0.43 -2.45 16 6 C 0.00 0.00 6.26 -81.79 -0.51 -0.51 16 7 C 0.20 2.40 5.06 -5.19 -0.03 2.38 16 8 N -0.76 -9.98 5.73 -59.76 -0.34 -10.33 16 9 C 0.13 2.18 6.66 -83.71 -0.56 1.62 16 10 C -0.15 -2.49 9.89 -39.40 -0.39 -2.88 16 11 C -0.15 -2.93 9.98 -39.42 -0.39 -3.33 16 12 C 0.12 2.72 6.65 -39.09 -0.26 2.46 16 13 O -0.23 -6.11 8.58 -0.04 0.00 -6.11 16 14 C -0.38 -11.00 9.94 30.87 0.31 -10.69 16 15 H 0.10 2.98 5.43 -52.48 -0.28 2.70 16 16 C 0.06 1.70 5.49 -17.52 -0.10 1.61 16 17 N -0.89 -26.16 13.96 55.48 0.77 -25.39 16 18 Si 0.91 22.13 28.62 -169.99 -4.86 17.27 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.18 -3.82 9.16 -39.42 -0.36 -4.18 16 23 C -0.15 -2.65 9.30 -39.40 -0.37 -3.02 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.64 7.12 -51.93 -0.37 0.27 16 27 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 29 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.07 0.89 7.95 -51.93 -0.41 0.48 16 31 H 0.06 0.64 7.02 -51.93 -0.36 0.28 16 32 H 0.39 4.83 8.48 -40.82 -0.35 4.48 16 33 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.12 2.17 8.06 -52.48 -0.42 1.74 16 35 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.13 3.03 5.63 -52.49 -0.30 2.73 16 37 H 0.11 1.72 6.73 -52.49 -0.35 1.37 16 LS Contribution 316.97 15.07 4.78 4.78 Total: -1.00 -31.23 316.97 -7.61 -38.84 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -4.52 Total: 6.30 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -3.05 Total: -20.64 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.05 Total: -40.42 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: 0.00 Total: -6.11 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.86 Total: 17.27 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.23 -7.61 -38.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020360451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.590 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds