Wall clock time and date at job start Mon Mar 30 2020 01:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36339 * 125.63725 * 2 1 4 4 C 1.34848 * 108.22075 * 179.97438 * 3 2 1 5 5 C 1.40893 * 107.41835 * 359.77107 * 4 3 2 6 6 C 1.34851 * 107.41084 * 0.37844 * 5 4 3 7 7 C 1.50706 * 125.88525 * 179.88271 * 6 5 4 8 8 N 1.46497 * 109.46796 * 94.69523 * 7 6 5 9 9 C 1.39784 * 120.00271 * 180.02562 * 8 7 6 10 10 C 1.38943 * 120.00943 * 179.97438 * 9 8 7 11 11 C 1.38014 * 119.99201 * 180.23154 * 10 9 8 12 12 C 1.38893 * 120.00778 * 359.49313 * 11 10 9 13 13 O 1.35796 * 119.99965 * 180.23531 * 12 11 10 14 14 C 1.34809 * 117.00833 * 174.73324 * 13 12 11 15 15 H 1.08003 * 119.99228 * 5.05017 * 14 13 12 16 16 C 1.38614 * 120.00609 * 185.05631 * 14 13 12 17 17 N 1.31577 * 120.00552 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99808 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47318 * 89.99693 * 18 16 14 20 20 H 1.48503 * 109.47031 * 210.00098 * 18 16 14 21 21 H 1.48503 * 109.46909 * 330.00027 * 18 16 14 22 22 C 1.38900 * 120.00885 * 0.50251 * 12 11 10 23 23 C 1.38006 * 120.00954 * 359.75620 * 22 12 11 24 24 H 1.08995 * 109.46943 * 270.02163 * 1 2 3 25 25 H 1.09004 * 109.47272 * 30.02056 * 1 2 3 26 26 H 1.09001 * 109.47068 * 150.02057 * 1 2 3 27 27 H 1.08001 * 125.88874 * 359.94793 * 3 2 1 28 28 H 1.08003 * 126.29427 * 180.02562 * 4 3 2 29 29 H 1.07993 * 126.29393 * 180.24304 * 5 4 3 30 30 H 1.08996 * 109.46927 * 334.69613 * 7 6 5 31 31 H 1.08994 * 109.46892 * 214.69029 * 7 6 5 32 32 H 0.97000 * 120.00235 * 359.97438 * 8 7 6 33 33 H 1.08000 * 120.00621 * 359.95602 * 10 9 8 34 34 H 1.08008 * 119.99318 * 179.72823 * 11 10 9 35 35 H 0.96994 * 120.00456 * 180.02562 * 17 16 14 36 36 H 1.08001 * 119.99605 * 179.72547 * 22 12 11 37 37 H 1.07997 * 120.00422 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5460 0.7044 0.0006 5 6 3.5461 -0.7045 0.0063 6 6 2.2594 -1.1081 0.0005 7 6 1.7819 -2.5375 0.0011 8 7 1.5129 -2.9618 1.3772 9 6 1.0568 -4.2583 1.6324 10 6 0.8021 -4.6611 2.9375 11 6 0.3564 -5.9428 3.1894 12 6 0.1524 -6.8266 2.1376 13 8 -0.2908 -8.0861 2.3853 14 6 -0.5723 -8.8574 1.3161 15 1 -0.3653 -8.4954 0.3198 16 6 -1.1274 -10.1148 1.4953 17 7 -1.4026 -10.8673 0.4516 18 14 -1.4849 -10.7409 3.2186 19 1 -2.8624 -10.3495 3.6117 20 1 -1.3650 -12.2209 3.2422 21 1 -0.5114 -10.1501 4.1717 22 6 0.4068 -6.4241 0.8328 23 6 0.8576 -5.1443 0.5806 24 1 -0.3633 0.0004 1.0276 25 1 -0.3634 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.9171 2.1324 -0.0008 28 1 4.4166 1.3437 0.0011 29 1 4.4165 -1.3437 0.0119 30 1 2.5502 -3.1773 -0.4328 31 1 0.8684 -2.6156 -0.5883 32 1 1.6519 -2.3434 2.1114 33 1 0.9571 -3.9728 3.7552 34 1 0.1626 -6.2573 4.2044 35 1 -1.7914 -11.7470 0.5770 36 1 0.2523 -7.1129 0.0154 37 1 1.0558 -4.8316 -0.4339 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020360451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:30 Heat of formation + Delta-G solvation = 41.183012 kcal Electronic energy + Delta-G solvation = -19471.524004 eV Core-core repulsion = 16408.033111 eV Total energy + Delta-G solvation = -3063.490893 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.14964 -40.78650 -38.82922 -35.91542 -34.30206 -33.70890 -31.84817 -31.41153 -28.78878 -27.19079 -26.95718 -25.92576 -23.53763 -22.18643 -21.49054 -20.30543 -19.72203 -19.11514 -18.08406 -17.46638 -16.66361 -16.24591 -15.96288 -15.66245 -15.45457 -15.38777 -15.08252 -14.53262 -14.24593 -14.11202 -14.06861 -13.84714 -13.33932 -13.27473 -13.09030 -13.03284 -12.89234 -12.73715 -12.47053 -12.38158 -11.91982 -11.19838 -10.99103 -10.31633 -9.80081 -9.51152 -9.05222 -8.42817 -8.00726 -6.10750 0.56487 0.87963 1.17402 1.34158 1.38728 1.55620 2.03801 2.08867 2.33484 2.82057 2.85294 3.17465 3.30709 3.74731 4.00644 4.10131 4.16289 4.19528 4.36200 4.42271 4.56378 4.58137 4.71137 4.73331 4.73916 4.82548 4.84200 5.19630 5.30269 5.37273 5.41681 5.44017 5.64408 5.82339 5.87632 6.06894 6.12869 6.28255 6.47290 6.54887 6.92988 6.96361 7.73274 8.69628 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.045070 B = 0.003148 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.109757 B = 8891.846501 C = 9038.452359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.445 5.445 3 C -0.006 4.006 4 C -0.224 4.224 5 C -0.195 4.195 6 C -0.016 4.016 7 C 0.205 3.795 8 N -0.739 5.739 9 C 0.160 3.840 10 C -0.142 4.142 11 C -0.140 4.140 12 C 0.067 3.933 13 O -0.254 6.254 14 C -0.391 4.391 15 H 0.078 0.922 16 C 0.004 3.996 17 N -0.932 5.932 18 Si 0.971 3.029 19 H -0.267 1.267 20 H -0.270 1.270 21 H -0.263 1.263 22 C -0.187 4.187 23 C -0.153 4.153 24 H 0.079 0.921 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.190 0.810 28 H 0.148 0.852 29 H 0.135 0.865 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.402 0.598 33 H 0.151 0.849 34 H 0.130 0.870 35 H 0.282 0.718 36 H 0.107 0.893 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.435 25.121 1.014 25.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.120 5.120 3 C -0.138 4.138 4 C -0.248 4.248 5 C -0.220 4.220 6 C -0.128 4.128 7 C 0.080 3.920 8 N -0.374 5.374 9 C 0.059 3.941 10 C -0.164 4.164 11 C -0.160 4.160 12 C 0.019 3.981 13 O -0.163 6.163 14 C -0.467 4.467 15 H 0.095 0.905 16 C -0.193 4.193 17 N -0.574 5.574 18 Si 0.794 3.206 19 H -0.192 1.192 20 H -0.195 1.195 21 H -0.187 1.187 22 C -0.207 4.207 23 C -0.176 4.176 24 H 0.097 0.903 25 H 0.124 0.876 26 H 0.099 0.901 27 H 0.207 0.793 28 H 0.165 0.835 29 H 0.153 0.847 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.237 0.763 33 H 0.168 0.832 34 H 0.148 0.852 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.940 24.830 0.936 25.334 hybrid contribution -0.116 -0.617 0.183 0.654 sum 4.824 24.213 1.119 24.714 Atomic orbital electron populations 1.22218 0.75836 1.05336 1.04126 1.44170 1.07122 1.05411 1.55315 1.22344 0.90319 0.92375 1.08722 1.21168 0.97123 0.94810 1.11677 1.20983 0.95489 0.96008 1.09567 1.20213 0.90817 0.88412 1.13328 1.19478 0.99807 0.88378 0.84329 1.44368 1.75509 1.10281 1.07251 1.17548 0.97683 0.85940 0.92904 1.20468 1.04983 0.95449 0.95481 1.20282 1.05318 0.92941 0.97441 1.19468 0.98930 0.85295 0.94454 1.83500 1.77533 1.21145 1.34112 1.20671 1.41643 0.98159 0.86264 0.90484 1.25251 0.95857 0.95197 1.02977 1.69747 1.44447 1.11719 1.31486 0.85200 0.79332 0.77385 0.78674 1.19185 1.19503 1.18718 1.21064 1.05720 0.97692 0.96224 1.20459 1.05778 0.92634 0.98680 0.90287 0.87606 0.90086 0.79251 0.83472 0.84749 0.90933 0.92074 0.76272 0.83170 0.85196 0.90852 0.87517 0.85218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 10.92 127.77 1.39 2.12 16 2 N -0.44 -7.32 3.15 -533.25 -1.68 -9.00 16 3 C -0.01 -0.10 11.43 83.21 0.95 0.85 16 4 C -0.22 -3.99 10.86 22.14 0.24 -3.74 16 5 C -0.19 -4.02 10.77 22.14 0.24 -3.78 16 6 C -0.02 -0.32 6.26 41.08 0.26 -0.06 16 7 C 0.20 4.31 5.06 85.64 0.43 4.75 16 8 N -0.74 -17.08 5.73 -342.98 -1.96 -19.04 16 9 C 0.16 4.86 6.66 38.21 0.25 5.12 16 10 C -0.14 -4.37 9.89 22.39 0.22 -4.15 16 11 C -0.14 -5.39 9.98 22.37 0.22 -5.17 16 12 C 0.07 3.19 6.65 22.59 0.15 3.34 16 13 O -0.25 -14.13 8.58 -23.04 -0.20 -14.33 16 14 C -0.39 -23.59 9.94 67.91 0.68 -22.91 16 15 H 0.08 4.87 5.43 -2.91 -0.02 4.85 16 16 C 0.00 0.24 5.49 84.82 0.47 0.71 16 17 N -0.93 -57.07 13.96 21.61 0.30 -56.77 16 18 Si 0.97 46.63 28.62 68.60 1.96 48.59 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 21 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 22 C -0.19 -8.39 9.16 22.37 0.20 -8.19 16 23 C -0.15 -5.41 9.30 22.39 0.21 -5.20 16 24 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.11 0.66 8.14 -2.38 -0.02 0.65 16 26 H 0.08 0.98 7.12 -2.39 -0.02 0.97 16 27 H 0.19 1.58 8.06 -2.91 -0.02 1.55 16 28 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.13 2.67 8.06 -2.91 -0.02 2.64 16 30 H 0.07 1.59 7.95 -2.39 -0.02 1.58 16 31 H 0.06 1.26 7.02 -2.39 -0.02 1.25 16 32 H 0.40 8.25 8.48 -92.71 -0.79 7.46 16 33 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 34 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 35 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 36 H 0.11 5.27 5.63 -2.91 -0.02 5.26 16 37 H 0.13 3.96 6.73 -2.91 -0.02 3.94 16 Total: -1.00 -70.22 316.97 4.65 -65.58 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.30 Total: 21.28 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 5.92 Total: -36.31 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -3.34 Total: -84.81 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.20 Total: -14.33 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.96 Total: 48.59 kcal Total: -70.22 4.65 -65.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020360451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.759 kcal (2) G-P(sol) polarization free energy of solvation -70.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds