Wall clock time and date at job start Mon Mar 30 2020 01:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46956 * 89.99765 * 8 6 4 10 10 H 1.48497 * 109.47226 * 210.00189 * 8 6 4 11 11 H 1.48501 * 109.47027 * 329.99834 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 C 1.50700 * 109.46869 * 179.72354 * 14 12 2 16 16 C 1.34236 * 126.49908 * 265.01915 * 15 14 12 17 17 N 1.36831 * 109.92932 * 180.02562 * 16 15 14 18 18 H 0.97002 * 125.06091 * 180.02562 * 17 16 15 19 19 C 1.37687 * 109.87534 * 359.97438 * 17 16 15 20 20 C 1.39121 * 133.50712 * 180.02562 * 19 17 16 21 21 C 1.37745 * 119.77790 * 179.97438 * 20 19 17 22 22 C 1.38833 * 120.66523 * 359.97438 * 21 20 19 23 23 C 1.36618 * 120.53228 * 0.02562 * 22 21 20 24 24 C 1.39634 * 119.76154 * 359.69522 * 23 22 21 25 25 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 26 26 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 27 27 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 28 28 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 29 29 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 30 30 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 32 32 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 33 33 H 1.08002 * 125.03617 * 0.02562 * 16 15 14 34 34 H 1.07999 * 120.10989 * 359.95242 * 20 19 17 35 35 H 1.08004 * 119.66823 * 179.97438 * 21 20 19 36 36 H 1.08007 * 119.72722 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.12041 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.3077 4.2605 -3.9000 10 1 4.6982 4.1993 -3.4970 11 1 3.5539 2.2200 -4.3052 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 6 2.3649 -3.6176 -0.0103 16 6 2.8127 -4.2806 -1.0882 17 7 3.6903 -5.2574 -0.7037 18 1 4.1451 -5.8666 -1.3062 19 6 3.8327 -5.2461 0.6658 20 6 4.5825 -6.0070 1.5571 21 6 4.5104 -5.7466 2.9078 22 6 3.6964 -4.7309 3.3906 23 6 2.9516 -3.9715 2.5332 24 6 3.0140 -4.2143 1.1596 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3632 -0.8900 -0.5138 28 1 1.6083 2.0285 0.5137 29 1 3.1499 1.1385 0.5139 30 1 4.0317 4.4431 -0.8505 31 1 0.7588 -2.5340 0.8844 32 1 0.7590 -2.5261 -0.8955 33 1 2.5232 -4.0737 -2.1079 34 1 5.2187 -6.7993 1.1912 35 1 5.0929 -6.3386 3.5982 36 1 3.6510 -4.5401 4.4528 37 1 2.3210 -3.1828 2.9161 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035133786.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:28 Heat of formation + Delta-G solvation = 22.834915 kcal Electronic energy + Delta-G solvation = -20144.909285 eV Core-core repulsion = 17080.622759 eV Total energy + Delta-G solvation = -3064.286526 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.12283 -38.68273 -36.75621 -34.67685 -32.93796 -32.42117 -30.13059 -29.14881 -28.04354 -26.65512 -25.43801 -22.76352 -22.65108 -21.63340 -19.63914 -18.23979 -17.53386 -16.49832 -16.24399 -16.10327 -15.38706 -15.06417 -14.63134 -14.27831 -14.09146 -13.84700 -13.65398 -12.94369 -12.49073 -12.39425 -12.29399 -12.07299 -11.76289 -11.70559 -11.53165 -11.19275 -11.13229 -10.83738 -10.66799 -10.50077 -10.11195 -9.57021 -9.49168 -8.74064 -8.39462 -8.05560 -7.53303 -7.46555 -5.99842 -4.04319 1.27922 1.78059 2.81696 3.25313 3.31761 3.38304 3.42254 3.60432 4.02712 4.23252 4.49319 4.84837 4.94041 5.09272 5.22215 5.32578 5.36826 5.42216 5.49027 5.64582 5.73371 5.79698 5.85410 5.99054 6.01621 6.04779 6.27289 6.28783 6.59921 6.74756 6.83913 6.94054 7.15577 7.30804 7.52466 7.64061 7.65432 7.97526 8.29607 8.54471 8.96603 9.25001 9.60768 11.08213 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024701 B = 0.004315 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.269560 B = 6487.080566 C = 6645.586171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.607 5.607 3 C 0.246 3.754 4 C -0.524 4.524 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.503 3.497 13 O -0.531 6.531 14 C -0.067 4.067 15 C -0.140 4.140 16 C 0.057 3.943 17 N -0.596 5.596 18 H 0.413 0.587 19 C 0.095 3.905 20 C -0.134 4.134 21 C -0.104 4.104 22 C -0.152 4.152 23 C -0.063 4.063 24 C -0.088 4.088 25 H 0.043 0.957 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.030 0.970 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.168 0.832 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.923 -18.563 3.372 19.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.341 5.341 3 C 0.126 3.874 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.289 3.711 13 O -0.408 6.408 14 C -0.108 4.108 15 C -0.147 4.147 16 C -0.068 4.068 17 N -0.199 5.199 18 H 0.249 0.751 19 C -0.012 4.012 20 C -0.155 4.155 21 C -0.123 4.123 22 C -0.171 4.171 23 C -0.082 4.082 24 C -0.092 4.092 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.185 0.815 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.132 -18.426 3.306 19.171 hybrid contribution 0.395 0.269 -1.369 1.450 sum -3.737 -18.157 1.937 18.639 Atomic orbital electron populations 1.21621 0.81650 1.02442 1.00305 1.48167 1.06016 1.07821 1.72056 1.19247 0.92561 0.78247 0.97326 1.21451 1.36268 1.06146 0.92403 0.92541 1.24942 0.95438 0.96471 0.97324 1.69935 1.38517 1.14340 1.30678 0.86513 0.77652 0.78540 0.84794 1.20661 1.21124 1.19973 1.20339 0.88242 0.84808 0.77693 1.90679 1.13890 1.87071 1.49147 1.20038 0.96546 0.90467 1.03709 1.19676 1.03964 0.99798 0.91307 1.21524 0.94506 0.91790 0.99014 1.41624 1.40755 1.32181 1.05363 0.75061 1.18230 1.00459 0.99054 0.83488 1.19947 1.01842 1.01293 0.92411 1.20725 0.99266 0.98220 0.94109 1.20571 0.99410 0.97709 0.99421 1.20278 0.98512 0.98252 0.91159 1.19022 0.99738 0.97193 0.93283 0.93883 0.90946 0.92464 0.95169 0.93939 0.92777 0.89063 0.88914 0.81470 0.86651 0.86136 0.86298 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 10.25 59.85 0.61 1.94 16 2 N -0.61 -13.14 2.86 -182.95 -0.52 -13.66 16 3 C 0.25 6.59 5.16 -5.20 -0.03 6.56 16 4 C -0.52 -15.12 9.39 -34.44 -0.32 -15.44 16 5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 8 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 12 C 0.50 10.76 7.67 -10.98 -0.08 10.67 16 13 O -0.53 -14.01 15.61 5.55 0.09 -13.92 16 14 C -0.07 -1.03 4.78 -29.03 -0.14 -1.17 16 15 C -0.14 -2.24 4.81 -102.71 -0.49 -2.74 16 16 C 0.06 0.79 11.73 -16.73 -0.20 0.59 16 17 N -0.60 -7.44 6.07 -10.65 -0.06 -7.51 16 18 H 0.41 3.64 8.96 -40.82 -0.37 3.27 16 19 C 0.09 1.38 7.28 -83.99 -0.61 0.77 16 20 C -0.13 -1.68 10.08 -39.43 -0.40 -2.08 16 21 C -0.10 -1.25 10.01 -39.54 -0.40 -1.64 16 22 C -0.15 -1.97 9.97 -39.95 -0.40 -2.37 16 23 C -0.06 -0.96 10.05 -39.65 -0.40 -1.36 16 24 C -0.09 -1.43 6.35 -105.14 -0.67 -2.10 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 27 H 0.06 0.72 6.43 -51.93 -0.33 0.39 16 28 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.09 1.21 8.11 -51.93 -0.42 0.79 16 32 H 0.09 1.19 7.40 -51.93 -0.38 0.80 16 33 H 0.17 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 37 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 320.69 15.07 4.83 4.83 Total: -1.00 -36.36 320.69 -8.38 -44.74 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.81 Total: 1.49 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -3.62 Total: -6.71 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.15 Total: -47.54 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.09 Total: -13.92 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -36.36 -8.38 -44.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035133786.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.579 kcal (2) G-P(sol) polarization free energy of solvation -36.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds