Wall clock time and date at job start Mon Mar 30 2020 01:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46956 * 89.99765 * 8 6 4 10 10 H 1.48497 * 109.47226 * 210.00189 * 8 6 4 11 11 H 1.48501 * 109.47027 * 329.99834 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 C 1.50700 * 109.46869 * 179.72354 * 14 12 2 16 16 C 1.34236 * 126.49908 * 265.01915 * 15 14 12 17 17 N 1.36831 * 109.92932 * 180.02562 * 16 15 14 18 18 H 0.97002 * 125.06091 * 180.02562 * 17 16 15 19 19 C 1.37687 * 109.87534 * 359.97438 * 17 16 15 20 20 C 1.39121 * 133.50712 * 180.02562 * 19 17 16 21 21 C 1.37745 * 119.77790 * 179.97438 * 20 19 17 22 22 C 1.38833 * 120.66523 * 359.97438 * 21 20 19 23 23 C 1.36618 * 120.53228 * 0.02562 * 22 21 20 24 24 C 1.39634 * 119.76154 * 359.69522 * 23 22 21 25 25 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 26 26 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 27 27 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 28 28 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 29 29 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 30 30 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 31 31 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 32 32 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 33 33 H 1.08002 * 125.03617 * 0.02562 * 16 15 14 34 34 H 1.07999 * 120.10989 * 359.95242 * 20 19 17 35 35 H 1.08004 * 119.66823 * 179.97438 * 21 20 19 36 36 H 1.08007 * 119.72722 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.12041 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.3077 4.2605 -3.9000 10 1 4.6982 4.1993 -3.4970 11 1 3.5539 2.2200 -4.3052 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 6 2.3649 -3.6176 -0.0103 16 6 2.8127 -4.2806 -1.0882 17 7 3.6903 -5.2574 -0.7037 18 1 4.1451 -5.8666 -1.3062 19 6 3.8327 -5.2461 0.6658 20 6 4.5825 -6.0070 1.5571 21 6 4.5104 -5.7466 2.9078 22 6 3.6964 -4.7309 3.3906 23 6 2.9516 -3.9715 2.5332 24 6 3.0140 -4.2143 1.1596 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3632 -0.8900 -0.5138 28 1 1.6083 2.0285 0.5137 29 1 3.1499 1.1385 0.5139 30 1 4.0317 4.4431 -0.8505 31 1 0.7588 -2.5340 0.8844 32 1 0.7590 -2.5261 -0.8955 33 1 2.5232 -4.0737 -2.1079 34 1 5.2187 -6.7993 1.1912 35 1 5.0929 -6.3386 3.5982 36 1 3.6510 -4.5401 4.4528 37 1 2.3210 -3.1828 2.9161 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035133786.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:27 Heat of formation + Delta-G solvation = -0.931987 kcal Electronic energy + Delta-G solvation = -20145.939895 eV Core-core repulsion = 17080.622759 eV Total energy + Delta-G solvation = -3065.317137 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.15151 -40.35076 -37.74319 -36.48912 -34.75243 -33.90678 -31.30626 -30.19275 -29.77342 -27.96618 -27.07334 -24.68869 -23.71018 -22.63529 -20.95202 -19.62677 -18.67570 -18.63705 -17.71089 -17.28828 -16.95273 -16.37672 -16.11853 -16.00235 -15.26079 -14.94288 -14.68538 -14.40832 -14.16211 -13.83795 -13.67027 -13.46841 -13.36434 -13.02304 -12.88767 -12.75113 -12.52347 -12.48198 -12.24408 -12.17996 -11.70374 -11.63893 -10.71208 -10.63147 -10.32598 -9.33919 -9.07827 -8.51396 -8.20704 -6.36036 0.26216 0.75684 1.36245 1.39714 1.49867 1.70649 1.97826 2.31572 2.37200 2.63523 3.05122 3.08309 3.84779 3.93171 4.02742 4.16350 4.26442 4.38085 4.47271 4.53450 4.64064 4.70250 4.78229 4.84991 4.94248 5.01504 5.05810 5.08965 5.24620 5.28524 5.59374 5.60800 5.73708 5.82238 5.87830 5.90589 6.08954 6.29547 6.72834 6.78220 6.89373 7.30841 7.61526 8.86315 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024701 B = 0.004315 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.269560 B = 6487.080566 C = 6645.586171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.615 5.615 3 C 0.259 3.741 4 C -0.540 4.540 5 H 0.055 0.945 6 C 0.004 3.996 7 N -0.931 5.931 8 Si 0.970 3.030 9 H -0.262 1.262 10 H -0.282 1.282 11 H -0.271 1.271 12 C 0.495 3.505 13 O -0.593 6.593 14 C -0.048 4.048 15 C -0.182 4.182 16 C 0.065 3.935 17 N -0.586 5.586 18 H 0.430 0.570 19 C 0.074 3.926 20 C -0.135 4.135 21 C -0.108 4.108 22 C -0.154 4.154 23 C -0.095 4.095 24 C -0.121 4.121 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.020 0.980 29 H -0.008 1.008 30 H 0.266 0.734 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.196 0.804 34 H 0.145 0.855 35 H 0.154 0.846 36 H 0.140 0.860 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.717 -20.379 2.103 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.347 5.347 3 C 0.138 3.862 4 C -0.579 4.579 5 H 0.073 0.927 6 C -0.194 4.194 7 N -0.571 5.571 8 Si 0.794 3.206 9 H -0.186 1.186 10 H -0.208 1.208 11 H -0.196 1.196 12 C 0.284 3.716 13 O -0.474 6.474 14 C -0.088 4.088 15 C -0.189 4.189 16 C -0.062 4.062 17 N -0.190 5.190 18 H 0.269 0.731 19 C -0.033 4.033 20 C -0.156 4.156 21 C -0.127 4.127 22 C -0.173 4.173 23 C -0.114 4.114 24 C -0.126 4.126 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.117 0.883 28 H 0.038 0.962 29 H 0.010 0.990 30 H 0.075 0.925 31 H 0.131 0.869 32 H 0.144 0.856 33 H 0.213 0.787 34 H 0.163 0.837 35 H 0.171 0.829 36 H 0.157 0.843 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.977 -20.278 2.037 20.979 hybrid contribution 0.670 0.788 -0.889 1.364 sum -4.307 -19.490 1.148 19.993 Atomic orbital electron populations 1.21941 0.77877 1.04125 1.02466 1.48213 1.08371 1.06252 1.71846 1.18701 0.90892 0.80662 0.95974 1.21727 1.36626 1.06469 0.93046 0.92657 1.25911 0.94920 0.96476 1.02095 1.70067 1.39091 1.14827 1.33161 0.85384 0.78044 0.78230 0.78952 1.18639 1.20801 1.19615 1.21475 0.87927 0.86375 0.75809 1.90635 1.16872 1.88068 1.51822 1.19966 0.96197 0.86405 1.06232 1.19903 1.05821 1.01013 0.92167 1.21995 0.93436 0.91038 0.99754 1.41635 1.40225 1.32038 1.05080 0.73070 1.18563 1.00928 0.99360 0.84491 1.20374 1.01353 1.01396 0.92447 1.21160 0.98914 0.97943 0.94671 1.20921 0.98689 0.97381 1.00319 1.20458 1.00029 0.99318 0.91573 1.19408 1.00864 0.98381 0.93960 0.91457 0.91685 0.88341 0.96153 0.99021 0.92476 0.86859 0.85561 0.78745 0.83741 0.82874 0.84266 0.86906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.33 10.25 127.77 1.31 3.64 16 2 N -0.61 -26.89 2.86 -851.12 -2.43 -29.32 16 3 C 0.26 14.55 5.16 85.63 0.44 15.00 16 4 C -0.54 -31.88 9.39 25.60 0.24 -31.64 16 5 H 0.06 3.20 7.81 -2.91 -0.02 3.17 16 6 C 0.00 0.26 5.46 84.66 0.46 0.73 16 7 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 8 Si 0.97 45.55 29.54 68.60 2.03 47.58 16 9 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 12 C 0.49 21.45 7.67 87.66 0.67 22.12 16 13 O -0.59 -32.69 15.61 -3.04 -0.05 -32.74 16 14 C -0.05 -1.41 4.78 29.10 0.14 -1.27 16 15 C -0.18 -5.70 4.81 -18.63 -0.09 -5.79 16 16 C 0.06 1.68 11.73 83.00 0.97 2.66 16 17 N -0.59 -13.71 6.07 -187.61 -1.14 -14.85 16 18 H 0.43 6.68 8.96 -92.71 -0.83 5.85 16 19 C 0.07 2.08 7.28 39.03 0.28 2.36 16 20 C -0.14 -3.13 10.08 22.37 0.23 -2.90 16 21 C -0.11 -2.38 10.01 22.30 0.22 -2.15 16 22 C -0.15 -3.90 9.97 22.03 0.22 -3.68 16 23 C -0.10 -2.93 10.05 22.23 0.22 -2.71 16 24 C -0.12 -3.98 6.35 -20.20 -0.13 -4.11 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 27 H 0.10 2.13 6.43 -2.39 -0.02 2.12 16 28 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 29 H -0.01 -0.55 7.42 -2.38 -0.02 -0.56 16 30 H 0.27 15.47 8.31 -92.72 -0.77 14.70 16 31 H 0.11 2.80 8.11 -2.38 -0.02 2.78 16 32 H 0.13 2.81 7.40 -2.39 -0.02 2.79 16 33 H 0.20 3.75 8.06 -2.91 -0.02 3.72 16 34 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 37 H 0.11 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -83.50 320.69 4.14 -79.35 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.25 Total: 15.29 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 5.20 Total: -7.75 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -3.29 Total: -101.74 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.05 Total: -32.74 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -83.50 4.14 -79.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035133786.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.423 kcal (2) G-P(sol) polarization free energy of solvation -83.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds