Wall clock time and date at job start Mon Mar 30 2020 01:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47076 * 2 1 4 4 C 1.46502 * 120.00175 * 274.90904 * 3 2 1 5 5 C 1.50702 * 109.47145 * 262.75265 * 4 3 2 6 6 H 1.07992 * 120.00011 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99799 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99786 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99975 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47280 * 90.00206 * 9 7 5 11 11 H 1.48503 * 109.46999 * 210.00204 * 9 7 5 12 12 H 1.48499 * 109.47239 * 329.99700 * 9 7 5 13 13 C 1.34786 * 120.00058 * 94.91251 * 3 2 1 14 14 O 1.21640 * 119.99761 * 0.91440 * 13 3 2 15 15 C 1.47062 * 119.99937 * 180.92209 * 13 3 2 16 16 C 1.35864 * 125.43177 * 169.65146 * 15 13 3 17 17 C 1.41588 * 107.72726 * 179.97438 * 16 15 13 18 18 C 1.40102 * 133.37296 * 180.02562 * 17 16 15 19 19 C 1.36444 * 119.82285 * 180.02562 * 18 17 16 20 20 C 1.38933 * 120.61676 * 0.05733 * 19 18 17 21 21 C 1.37670 * 120.65255 * 359.90514 * 20 19 18 22 22 C 1.39225 * 119.80931 * 0.06616 * 21 20 19 23 23 N 1.37481 * 133.18439 * 179.97438 * 22 21 20 24 24 H 0.97002 * 125.60156 * 0.03242 * 23 22 21 25 25 H 1.08994 * 109.47685 * 300.00502 * 1 2 3 26 26 H 1.09006 * 109.47025 * 60.00067 * 1 2 3 27 27 H 1.09007 * 109.47045 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47439 * 239.99502 * 2 1 3 29 29 H 1.09002 * 109.46559 * 119.99810 * 2 1 3 30 30 H 1.08997 * 109.46646 * 22.74834 * 4 3 2 31 31 H 1.08999 * 109.47230 * 142.74504 * 4 3 2 32 32 H 0.97003 * 120.00313 * 179.97438 * 8 7 5 33 33 H 1.07999 * 126.13250 * 359.95996 * 16 15 13 34 34 H 1.07992 * 120.08752 * 0.02562 * 18 17 16 35 35 H 1.08003 * 119.68737 * 179.97438 * 19 18 17 36 36 H 1.08000 * 119.67174 * 179.97438 * 20 19 18 37 37 H 1.07997 * 120.09313 * 180.34191 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1601 2.1080 -1.2641 5 6 3.5917 2.0329 -1.7288 6 1 4.3228 1.4978 -1.1412 7 6 3.9682 2.6484 -2.9038 8 7 5.2176 2.5834 -3.3091 9 14 2.7037 3.5747 -3.9198 10 1 2.6592 4.9929 -3.4816 11 1 3.0795 3.5116 -5.3551 12 1 1.3671 2.9559 -3.7305 13 6 2.3372 1.9832 1.1630 14 8 2.2353 1.3742 2.2110 15 6 2.8081 3.3764 1.1648 16 6 2.9689 4.1521 2.2686 17 6 3.4369 5.4182 1.8414 18 6 3.7743 6.5977 2.5180 19 6 4.2062 7.6839 1.8141 20 6 4.3141 7.6329 0.4299 21 6 3.9892 6.4853 -0.2576 22 6 3.5467 5.3635 0.4382 23 7 3.1571 4.1052 0.0443 24 1 3.1317 3.7823 -0.8700 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 1.5102 1.6599 -2.0156 31 1 1.8800 3.1511 -1.1168 32 1 5.4825 3.0160 -4.1359 33 1 2.7744 3.8560 3.2888 34 1 3.6928 6.6471 3.5937 35 1 4.4653 8.5922 2.3379 36 1 4.6572 8.5018 -0.1120 37 1 4.0817 6.4538 -1.3331 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037842315.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:25 Heat of formation + Delta-G solvation = 23.213771 kcal Electronic energy + Delta-G solvation = -21046.323376 eV Core-core repulsion = 17982.053278 eV Total energy + Delta-G solvation = -3064.270098 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.63755 -40.56165 -37.77147 -37.28845 -35.02300 -33.11191 -32.51683 -30.32615 -30.13660 -29.33906 -25.65243 -24.84664 -23.34791 -22.81484 -21.74872 -20.54877 -19.35403 -18.49979 -18.37965 -17.29892 -16.64346 -16.58789 -16.20241 -15.58586 -15.26520 -15.09653 -14.86482 -14.74103 -14.46291 -14.44749 -13.85702 -13.74587 -13.39850 -13.29397 -12.75213 -12.68049 -12.55482 -12.40427 -12.25935 -11.96907 -11.88229 -11.74353 -11.20038 -11.03162 -10.82100 -9.73358 -9.14176 -8.67086 -8.53599 -6.66343 -0.15308 0.76950 1.12301 1.21427 1.25749 1.34140 1.95938 2.10491 2.22603 2.42991 2.77585 3.01571 3.47856 3.84344 4.11621 4.19662 4.25242 4.27476 4.29187 4.41666 4.50012 4.53410 4.58944 4.65192 4.81171 4.86996 4.97024 5.00087 5.10215 5.17694 5.25907 5.44941 5.58555 5.69788 5.76316 5.81580 5.93564 6.24280 6.31644 6.44738 6.63149 6.94302 7.05172 8.61293 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013780 B = 0.008970 C = 0.005981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.379354 B = 3120.766297 C = 4680.638512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.104 3.896 3 N -0.591 5.591 4 C 0.198 3.802 5 C -0.562 4.562 6 H 0.035 0.965 7 C 0.035 3.965 8 N -0.914 5.914 9 Si 0.909 3.091 10 H -0.256 1.256 11 H -0.267 1.267 12 H -0.233 1.233 13 C 0.578 3.422 14 O -0.570 6.570 15 C 0.000 4.000 16 C -0.130 4.130 17 C -0.140 4.140 18 C -0.066 4.066 19 C -0.149 4.149 20 C -0.084 4.084 21 C -0.157 4.157 22 C 0.074 3.926 23 N -0.570 5.570 24 H 0.435 0.565 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.277 0.723 33 H 0.163 0.837 34 H 0.150 0.850 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.136 7.809 4.717 11.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.018 4.018 3 N -0.321 5.321 4 C 0.075 3.925 5 C -0.600 4.600 6 H 0.054 0.946 7 C -0.169 4.169 8 N -0.550 5.550 9 Si 0.729 3.271 10 H -0.180 1.180 11 H -0.192 1.192 12 H -0.156 1.156 13 C 0.367 3.633 14 O -0.452 6.452 15 C -0.111 4.111 16 C -0.157 4.157 17 C -0.145 4.145 18 C -0.085 4.085 19 C -0.167 4.167 20 C -0.103 4.103 21 C -0.177 4.177 22 C -0.039 4.039 23 N -0.186 5.186 24 H 0.291 0.709 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.180 0.820 34 H 0.167 0.833 35 H 0.178 0.822 36 H 0.174 0.826 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.102 7.344 4.865 11.315 hybrid contribution 0.185 -0.312 -1.356 1.404 sum -6.916 7.032 3.509 10.469 Atomic orbital electron populations 1.22055 0.93687 1.03656 1.01801 1.21619 0.95870 0.81066 1.03250 1.47933 1.62904 1.15072 1.06158 1.20051 0.96514 0.92802 0.83141 1.21425 0.93921 1.36436 1.08212 0.94631 1.25744 0.97174 0.96428 0.97512 1.69996 1.18449 1.43186 1.23416 0.86283 0.80944 0.80269 0.79594 1.17999 1.19194 1.15558 1.17458 0.77026 0.84965 0.83826 1.90691 1.57096 1.65503 1.31890 1.20256 1.09516 0.93233 0.88130 1.20986 1.04642 0.92252 0.97843 1.18521 1.07755 0.96096 0.92129 1.20729 0.96709 0.90275 1.00738 1.21009 1.02412 0.99508 0.93789 1.21246 0.97471 0.96517 0.95078 1.20363 1.05496 0.92262 0.99619 1.19079 1.02040 0.87419 0.95325 1.44292 1.53702 1.09849 1.10802 0.70863 0.93461 0.92172 0.88795 0.89757 0.90672 0.91664 0.94840 0.91348 0.81963 0.83272 0.82188 0.82596 0.86911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 10.24 71.98 0.74 -3.49 16 2 C 0.10 3.62 6.16 86.38 0.53 4.15 16 3 N -0.59 -25.00 2.48 -830.45 -2.06 -27.06 16 4 C 0.20 8.63 3.83 85.63 0.33 8.96 16 5 C -0.56 -29.29 7.83 25.60 0.20 -29.09 16 6 H 0.04 2.18 8.06 -2.91 -0.02 2.16 16 7 C 0.03 1.80 5.17 84.66 0.44 2.24 16 8 N -0.91 -51.65 13.96 21.45 0.30 -51.35 16 9 Si 0.91 37.06 27.02 68.60 1.85 38.92 16 10 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 11 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 12 H -0.23 -8.54 6.54 99.48 0.65 -7.89 16 13 C 0.58 26.18 7.58 86.56 0.66 26.84 16 14 O -0.57 -26.89 16.36 -4.16 -0.07 -26.96 16 15 C 0.00 0.01 6.55 39.91 0.26 0.27 16 16 C -0.13 -5.07 10.55 22.55 0.24 -4.83 16 17 C -0.14 -5.13 6.16 -21.36 -0.13 -5.26 16 18 C -0.07 -1.82 10.06 22.30 0.22 -1.59 16 19 C -0.15 -3.49 9.96 22.02 0.22 -3.27 16 20 C -0.08 -2.20 10.01 22.30 0.22 -1.97 16 21 C -0.16 -5.47 10.08 22.37 0.23 -5.24 16 22 C 0.07 2.98 7.25 39.14 0.28 3.27 16 23 N -0.57 -25.60 4.83 -177.18 -0.86 -26.46 16 24 H 0.44 20.27 2.71 -92.71 -0.25 20.01 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.08 2.82 8.11 -2.39 -0.02 2.80 16 29 H 0.07 2.70 7.27 -2.39 -0.02 2.68 16 30 H 0.07 2.61 7.08 -2.39 -0.02 2.60 16 31 H 0.03 1.48 4.66 -2.39 -0.01 1.47 16 32 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.16 5.60 8.06 -2.91 -0.02 5.58 16 34 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 35 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.11 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -65.27 307.74 4.38 -60.88 By element: Atomic # 1 Polarization: 40.28 SS G_CDS: 0.78 Total: 41.06 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 4.44 Total: -9.04 kcal Atomic # 7 Polarization: -102.25 SS G_CDS: -2.61 Total: -104.86 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.07 Total: -26.96 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 1.85 Total: 38.92 kcal Total: -65.27 4.38 -60.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037842315.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.097 kcal (2) G-P(sol) polarization free energy of solvation -65.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds