Wall clock time and date at job start Mon Mar 30 2020 01:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47263 * 2 1 4 4 C 1.46496 * 119.99610 * 284.02778 * 3 2 1 5 5 C 1.50698 * 109.47508 * 270.00028 * 4 3 2 6 6 H 1.08006 * 119.99740 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00178 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00569 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99850 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47227 * 59.99991 * 9 7 5 11 11 H 1.48508 * 109.47165 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47504 * 299.99554 * 9 7 5 13 13 C 1.34773 * 119.99840 * 104.03320 * 3 2 1 14 14 O 1.21619 * 119.99520 * 186.66084 * 13 3 2 15 15 C 1.47374 * 120.00662 * 6.65674 * 13 3 2 16 16 C 1.39322 * 120.34199 * 326.43691 * 15 13 3 17 17 C 1.38273 * 120.19645 * 179.97438 * 16 15 13 18 18 C 1.38064 * 120.88588 * 359.58649 * 17 16 15 19 19 C 1.38983 * 120.26853 * 0.64963 * 18 17 16 20 20 N 1.37794 * 133.37841 * 179.20722 * 19 18 17 21 21 H 0.96994 * 125.07501 * 0.02636 * 20 19 18 22 22 C 1.36554 * 109.85091 * 180.02562 * 20 19 18 23 23 C 1.34547 * 109.90016 * 359.97438 * 22 20 19 24 24 C 1.40668 * 119.51220 * 359.53460 * 19 18 17 25 25 H 1.09005 * 109.46733 * 60.00376 * 1 2 3 26 26 H 1.09001 * 109.47323 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47216 * 300.00746 * 1 2 3 28 28 H 1.08997 * 109.47216 * 239.99254 * 2 1 3 29 29 H 1.09005 * 109.46733 * 119.99624 * 2 1 3 30 30 H 1.08998 * 109.47184 * 30.00540 * 4 3 2 31 31 H 1.09008 * 109.46923 * 150.00038 * 4 3 2 32 32 H 0.96996 * 120.00621 * 179.97438 * 8 7 5 33 33 H 1.08000 * 119.89917 * 0.02562 * 16 15 13 34 34 H 1.08004 * 119.55657 * 179.97438 * 17 16 15 35 35 H 1.08001 * 119.86339 * 179.90941 * 18 17 16 36 36 H 1.07999 * 125.04675 * 180.02562 * 22 20 19 37 37 H 1.07999 * 126.50040 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9726 2.1743 -1.2309 5 6 3.2564 1.9867 -1.9974 6 1 4.0291 1.3410 -1.6069 7 6 3.4446 2.6394 -3.1972 8 7 2.5036 3.4254 -3.6730 9 14 5.0358 2.4064 -4.1476 10 1 5.2021 0.9710 -4.4902 11 1 4.9894 3.2104 -5.3954 12 1 6.1806 2.8521 -3.3134 13 6 2.5098 1.9222 1.1324 14 8 2.8022 3.1022 1.1654 15 6 2.6928 1.0839 2.3306 16 6 1.8128 0.0376 2.5986 17 6 1.9876 -0.7473 3.7235 18 6 3.0353 -0.5169 4.5927 19 6 3.9270 0.5224 4.3551 20 7 5.0310 0.9951 5.0306 21 1 5.3781 0.6268 5.8580 22 6 5.5635 2.0596 4.3612 23 6 4.8429 2.3108 3.2531 24 6 3.7602 1.3320 3.2169 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.1325 1.8465 -1.8433 31 1 1.8498 3.2279 -0.9799 32 1 2.6362 3.8849 -4.5169 33 1 0.9921 -0.1615 1.9254 34 1 1.2990 -1.5555 3.9215 35 1 3.1554 -1.1392 5.4671 36 1 6.4343 2.6164 4.6743 37 1 5.0270 3.0920 2.5305 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037842316.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:37 Heat of formation + Delta-G solvation = 48.977389 kcal Electronic energy + Delta-G solvation = -20699.998079 eV Core-core repulsion = 17636.845176 eV Total energy + Delta-G solvation = -3063.152904 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.17457 -39.07364 -36.50866 -35.26138 -32.81577 -31.74034 -30.29260 -29.34038 -28.76527 -26.93770 -23.84411 -23.10035 -22.10347 -21.60330 -20.61727 -19.03393 -17.36085 -16.84234 -16.34216 -15.66625 -15.29005 -15.08711 -14.52818 -14.32303 -14.01977 -13.55812 -13.40102 -13.04021 -12.72305 -12.52802 -12.28843 -11.96728 -11.58935 -11.50420 -11.27134 -11.17475 -11.10696 -10.83995 -10.52252 -10.32001 -10.04266 -9.61314 -9.50478 -8.79949 -8.37564 -8.09029 -7.62143 -7.47473 -5.98514 -4.03016 0.98711 1.67524 2.87231 3.16984 3.35822 3.39628 3.42448 3.51579 3.96908 4.28884 4.49592 4.83427 4.93857 5.05337 5.20576 5.32270 5.37080 5.49206 5.52426 5.69056 5.70773 5.77917 5.92839 6.02977 6.13219 6.29069 6.35546 6.48577 6.58167 6.63702 6.77512 6.90509 7.18611 7.22679 7.53589 7.58167 7.63697 7.98810 8.30525 8.51670 8.96526 9.18329 9.61800 11.09421 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019460 B = 0.005851 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.505915 B = 4784.687758 C = 5693.100103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.072 3.928 3 N -0.588 5.588 4 C 0.246 3.754 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.548 3.452 14 O -0.535 6.535 15 C -0.067 4.067 16 C -0.142 4.142 17 C -0.108 4.108 18 C -0.121 4.121 19 C 0.086 3.914 20 N -0.599 5.599 21 H 0.413 0.587 22 C 0.038 3.962 23 C -0.179 4.179 24 C -0.064 4.064 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.153 0.847 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.170 0.830 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.540 -9.919 16.745 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.052 4.052 3 N -0.319 5.319 4 C 0.127 3.873 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.335 3.665 14 O -0.413 6.413 15 C -0.071 4.071 16 C -0.161 4.161 17 C -0.127 4.127 18 C -0.142 4.142 19 C -0.021 4.021 20 N -0.203 5.203 21 H 0.249 0.751 22 C -0.087 4.087 23 C -0.204 4.204 24 C -0.070 4.070 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.116 0.884 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.170 0.830 34 H 0.146 0.854 35 H 0.136 0.864 36 H 0.187 0.813 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.715 -9.165 16.648 19.017 hybrid contribution 1.091 -0.312 -0.285 1.170 sum 1.806 -9.477 16.363 18.995 Atomic orbital electron populations 1.22222 0.96604 1.01544 1.02708 1.22256 0.93843 0.84918 1.04158 1.48110 1.59645 1.13167 1.10965 1.19276 0.97051 0.91976 0.79032 1.21423 1.02077 1.28075 1.04903 0.92509 1.24917 0.96800 0.94964 0.97343 1.69922 1.33219 1.29706 1.20574 0.86578 0.83849 0.78046 0.79058 1.20283 1.21193 1.20194 1.18049 0.78506 0.87209 0.82749 1.90736 1.50880 1.15847 1.83871 1.19694 0.95446 0.96441 0.95509 1.21894 1.01057 0.95107 0.98047 1.20715 0.97507 1.00174 0.94322 1.20046 0.95535 0.97421 1.01171 1.18169 0.91342 0.98114 0.94438 1.41648 1.25524 1.29178 1.23997 0.75112 1.21858 1.00360 0.91815 0.94661 1.21946 0.96299 1.02315 0.99804 1.18991 0.96544 0.97103 0.94357 0.91497 0.91971 0.92644 0.90761 0.88383 0.94875 0.93649 0.92717 0.82965 0.85427 0.86410 0.81254 0.82830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 9.20 37.16 0.34 -2.14 16 2 C 0.07 1.24 5.62 -4.04 -0.02 1.22 16 3 N -0.59 -13.25 2.49 -176.35 -0.44 -13.69 16 4 C 0.25 6.63 5.17 -5.20 -0.03 6.61 16 5 C -0.53 -15.31 9.39 -34.44 -0.32 -15.63 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 8 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 9 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.55 12.62 7.39 -12.54 -0.09 12.53 16 14 O -0.54 -14.36 15.61 5.26 0.08 -14.27 16 15 C -0.07 -1.26 5.54 -104.75 -0.58 -1.84 16 16 C -0.14 -2.10 7.43 -39.17 -0.29 -2.39 16 17 C -0.11 -1.29 9.99 -39.63 -0.40 -1.68 16 18 C -0.12 -1.43 10.06 -39.37 -0.40 -1.83 16 19 C 0.09 1.22 7.27 -83.99 -0.61 0.60 16 20 N -0.60 -6.70 6.06 -10.66 -0.06 -6.76 16 21 H 0.41 2.97 8.96 -40.82 -0.37 2.60 16 22 C 0.04 0.47 11.82 -16.75 -0.20 0.27 16 23 C -0.18 -3.03 10.46 -37.78 -0.40 -3.43 16 24 C -0.06 -1.15 6.11 -104.85 -0.64 -1.79 16 25 H 0.07 1.07 7.49 -51.93 -0.39 0.68 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.76 7.20 -51.93 -0.37 0.39 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.10 1.49 3.77 -52.48 -0.20 1.30 16 30 H 0.03 0.90 7.39 -51.93 -0.38 0.51 16 31 H 0.05 1.38 7.34 -51.92 -0.38 1.00 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.15 2.05 3.32 -52.49 -0.17 1.87 16 34 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.15 2.85 7.74 -52.49 -0.41 2.45 16 LS Contribution 308.99 15.07 4.66 4.66 Total: -1.00 -35.48 308.99 -8.11 -43.59 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -4.33 Total: 3.31 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -3.73 Total: -7.80 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.23 Total: -46.71 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.08 Total: -14.27 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -35.48 -8.11 -43.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037842316.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.568 kcal (2) G-P(sol) polarization free energy of solvation -35.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds