Wall clock time and date at job start Mon Mar 30 2020 01:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47263 * 2 1 4 4 C 1.46496 * 119.99610 * 284.02778 * 3 2 1 5 5 C 1.50698 * 109.47508 * 270.00028 * 4 3 2 6 6 H 1.08006 * 119.99740 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00178 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00569 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99850 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47227 * 59.99991 * 9 7 5 11 11 H 1.48508 * 109.47165 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47504 * 299.99554 * 9 7 5 13 13 C 1.34773 * 119.99840 * 104.03320 * 3 2 1 14 14 O 1.21619 * 119.99520 * 186.66084 * 13 3 2 15 15 C 1.47374 * 120.00662 * 6.65674 * 13 3 2 16 16 C 1.39322 * 120.34199 * 326.43691 * 15 13 3 17 17 C 1.38273 * 120.19645 * 179.97438 * 16 15 13 18 18 C 1.38064 * 120.88588 * 359.58649 * 17 16 15 19 19 C 1.38983 * 120.26853 * 0.64963 * 18 17 16 20 20 N 1.37794 * 133.37841 * 179.20722 * 19 18 17 21 21 H 0.96994 * 125.07501 * 0.02636 * 20 19 18 22 22 C 1.36554 * 109.85091 * 180.02562 * 20 19 18 23 23 C 1.34547 * 109.90016 * 359.97438 * 22 20 19 24 24 C 1.40668 * 119.51220 * 359.53460 * 19 18 17 25 25 H 1.09005 * 109.46733 * 60.00376 * 1 2 3 26 26 H 1.09001 * 109.47323 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47216 * 300.00746 * 1 2 3 28 28 H 1.08997 * 109.47216 * 239.99254 * 2 1 3 29 29 H 1.09005 * 109.46733 * 119.99624 * 2 1 3 30 30 H 1.08998 * 109.47184 * 30.00540 * 4 3 2 31 31 H 1.09008 * 109.46923 * 150.00038 * 4 3 2 32 32 H 0.96996 * 120.00621 * 179.97438 * 8 7 5 33 33 H 1.08000 * 119.89917 * 0.02562 * 16 15 13 34 34 H 1.08004 * 119.55657 * 179.97438 * 17 16 15 35 35 H 1.08001 * 119.86339 * 179.90941 * 18 17 16 36 36 H 1.07999 * 125.04675 * 180.02562 * 22 20 19 37 37 H 1.07999 * 126.50040 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.9726 2.1743 -1.2309 5 6 3.2564 1.9867 -1.9974 6 1 4.0291 1.3410 -1.6069 7 6 3.4446 2.6394 -3.1972 8 7 2.5036 3.4254 -3.6730 9 14 5.0358 2.4064 -4.1476 10 1 5.2021 0.9710 -4.4902 11 1 4.9894 3.2104 -5.3954 12 1 6.1806 2.8521 -3.3134 13 6 2.5098 1.9222 1.1324 14 8 2.8022 3.1022 1.1654 15 6 2.6928 1.0839 2.3306 16 6 1.8128 0.0376 2.5986 17 6 1.9876 -0.7473 3.7235 18 6 3.0353 -0.5169 4.5927 19 6 3.9270 0.5224 4.3551 20 7 5.0310 0.9951 5.0306 21 1 5.3781 0.6268 5.8580 22 6 5.5635 2.0596 4.3612 23 6 4.8429 2.3108 3.2531 24 6 3.7602 1.3320 3.2169 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.1325 1.8465 -1.8433 31 1 1.8498 3.2279 -0.9799 32 1 2.6362 3.8849 -4.5169 33 1 0.9921 -0.1615 1.9254 34 1 1.2990 -1.5555 3.9215 35 1 3.1554 -1.1392 5.4671 36 1 6.4343 2.6164 4.6743 37 1 5.0270 3.0920 2.5305 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037842316.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:37 Heat of formation + Delta-G solvation = 24.613578 kcal Electronic energy + Delta-G solvation = -20701.054573 eV Core-core repulsion = 17636.845176 eV Total energy + Delta-G solvation = -3064.209398 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.29054 -40.66685 -37.77654 -36.95302 -34.93989 -32.95095 -31.88529 -30.55922 -29.91760 -28.85404 -25.53801 -24.66684 -23.50881 -22.70644 -21.85454 -20.44738 -18.83437 -18.53492 -18.03155 -17.07458 -16.92386 -16.37527 -16.22033 -15.78021 -15.29954 -14.92816 -14.69365 -14.63433 -14.25751 -13.90964 -13.53005 -13.50698 -13.28426 -13.09688 -12.77445 -12.67317 -12.53022 -12.40810 -12.26876 -12.15322 -11.74515 -11.59211 -10.74240 -10.66029 -10.48923 -9.47157 -9.14529 -8.64278 -8.23736 -6.39616 -0.17364 0.60931 1.33509 1.38560 1.46142 1.70643 1.98767 2.25353 2.31575 2.44297 2.96734 3.04507 3.61602 3.94423 4.05072 4.11130 4.29786 4.31910 4.37347 4.43392 4.58885 4.68699 4.82105 4.91975 4.95583 5.00032 5.06167 5.13526 5.19915 5.37763 5.48559 5.50625 5.56224 5.70784 5.74250 5.85162 6.05015 6.15022 6.67363 6.76964 6.77934 7.25080 7.45350 8.83065 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019460 B = 0.005851 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.505915 B = 4784.687758 C = 5693.100103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.066 3.934 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.547 4.547 6 H 0.048 0.952 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.259 1.259 11 H -0.273 1.273 12 H -0.279 1.279 13 C 0.538 3.462 14 O -0.596 6.596 15 C -0.117 4.117 16 C -0.131 4.131 17 C -0.106 4.106 18 C -0.095 4.095 19 C 0.076 3.924 20 N -0.577 5.577 21 H 0.437 0.563 22 C 0.086 3.914 23 C -0.253 4.253 24 C -0.099 4.099 25 H 0.042 0.958 26 H 0.107 0.893 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.127 0.873 30 H 0.027 0.973 31 H -0.004 1.004 32 H 0.268 0.732 33 H 0.163 0.837 34 H 0.176 0.824 35 H 0.167 0.833 36 H 0.215 0.785 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.300 -13.624 19.570 23.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.056 4.056 3 N -0.325 5.325 4 C 0.141 3.859 5 C -0.586 4.586 6 H 0.066 0.934 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.198 1.198 12 H -0.204 1.204 13 C 0.328 3.672 14 O -0.479 6.479 15 C -0.121 4.121 16 C -0.149 4.149 17 C -0.125 4.125 18 C -0.115 4.115 19 C -0.031 4.031 20 N -0.182 5.182 21 H 0.279 0.721 22 C -0.042 4.042 23 C -0.278 4.278 24 C -0.105 4.105 25 H 0.061 0.939 26 H 0.126 0.874 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.144 0.856 30 H 0.045 0.955 31 H 0.014 0.986 32 H 0.077 0.923 33 H 0.180 0.820 34 H 0.194 0.806 35 H 0.184 0.816 36 H 0.231 0.769 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.451 -12.947 19.512 23.462 hybrid contribution 0.858 0.825 -1.027 1.573 sum 2.309 -12.121 18.485 22.225 Atomic orbital electron populations 1.22171 0.94024 1.04177 1.01829 1.22631 0.95918 0.81978 1.05044 1.48136 1.59982 1.14856 1.09487 1.18719 0.96271 0.90121 0.80788 1.21650 1.02628 1.28567 1.05721 0.93358 1.25867 1.00617 0.94258 0.98236 1.70045 1.35281 1.30195 1.21092 0.85459 0.78690 0.79023 0.77583 1.18394 1.19811 1.20435 1.18938 0.76985 0.87139 0.84110 1.90670 1.53368 1.18667 1.85195 1.19448 0.98866 0.98807 0.94940 1.22080 0.99876 0.93712 0.99280 1.21224 0.98233 1.00369 0.92652 1.20656 0.93380 0.95722 1.01746 1.18402 0.92697 0.98452 0.93521 1.41626 1.24246 1.28103 1.24242 0.72121 1.22311 0.99368 0.90517 0.91987 1.21830 0.99593 1.03943 1.02416 1.19335 0.96752 0.98455 0.95966 0.93914 0.87420 0.92026 0.91679 0.85626 0.95518 0.98608 0.92266 0.81992 0.80649 0.81591 0.76853 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.60 9.20 71.98 0.66 -3.94 16 2 C 0.07 2.31 5.62 86.38 0.49 2.79 16 3 N -0.59 -28.81 2.49 -830.09 -2.07 -30.88 16 4 C 0.26 15.39 5.17 85.63 0.44 15.84 16 5 C -0.55 -33.82 9.39 25.60 0.24 -33.58 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.56 5.46 84.65 0.46 1.03 16 8 N -0.93 -58.30 13.29 21.44 0.28 -58.02 16 9 Si 0.97 46.88 29.54 68.60 2.03 48.90 16 10 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 13 C 0.54 27.02 7.39 86.65 0.64 27.66 16 14 O -0.60 -35.79 15.61 -4.09 -0.06 -35.85 16 15 C -0.12 -4.57 5.54 -19.95 -0.11 -4.68 16 16 C -0.13 -3.63 7.43 22.54 0.17 -3.46 16 17 C -0.11 -2.01 9.99 22.24 0.22 -1.79 16 18 C -0.09 -1.74 10.06 22.41 0.23 -1.51 16 19 C 0.08 1.94 7.27 38.98 0.28 2.22 16 20 N -0.58 -10.77 6.06 -187.63 -1.14 -11.91 16 21 H 0.44 3.96 8.96 -92.71 -0.83 3.13 16 22 C 0.09 1.97 11.82 83.11 0.98 2.95 16 23 C -0.25 -9.14 10.46 23.44 0.25 -8.89 16 24 C -0.10 -3.64 6.11 -20.01 -0.12 -3.76 16 25 H 0.04 1.40 7.49 -2.38 -0.02 1.38 16 26 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.06 1.65 7.20 -2.39 -0.02 1.63 16 28 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.13 3.72 3.77 -2.90 -0.01 3.71 16 30 H 0.03 1.57 7.39 -2.39 -0.02 1.55 16 31 H 0.00 -0.28 7.34 -2.38 -0.02 -0.30 16 32 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 33 H 0.16 4.02 3.32 -2.91 -0.01 4.01 16 34 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.21 2.82 8.06 -2.91 -0.02 2.79 16 37 H 0.11 4.87 7.74 -2.91 -0.02 4.85 16 Total: -1.00 -88.49 308.99 4.14 -84.34 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.27 Total: 12.54 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 4.83 Total: -9.13 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -2.92 Total: -100.80 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -0.06 Total: -35.85 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.90 kcal Total: -88.49 4.14 -84.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037842316.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.958 kcal (2) G-P(sol) polarization free energy of solvation -88.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds