Wall clock time and date at job start Mon Mar 30 2020 01:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47055 * 2 1 4 4 N 1.46496 * 109.46708 * 120.00160 * 2 1 3 5 5 C 1.46500 * 120.00325 * 121.38322 * 4 2 1 6 6 C 1.50705 * 109.46886 * 269.99491 * 5 4 2 7 7 H 1.07997 * 120.00080 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99652 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00290 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99420 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47361 * 60.00444 * 10 8 6 12 12 H 1.48505 * 109.46924 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47195 * 300.00152 * 10 8 6 14 14 C 1.34784 * 120.00217 * 301.37379 * 4 2 1 15 15 O 1.21537 * 120.00375 * 212.67751 * 14 4 2 16 16 C 1.47917 * 119.99415 * 32.67577 * 14 4 2 17 17 C 1.39624 * 119.98939 * 137.36679 * 16 14 4 18 18 C 1.37733 * 120.00595 * 180.02562 * 17 16 14 19 19 C 1.39678 * 119.99107 * 359.97438 * 18 17 16 20 20 C 1.43198 * 120.00710 * 179.97438 * 19 18 17 21 21 N 7.35060 * 35.76174 * 52.12918 * 2 1 3 22 22 C 1.39679 * 119.98844 * 0.25910 * 19 18 17 23 23 C 1.37728 * 119.99438 * 359.50785 * 22 19 18 24 24 H 1.08995 * 109.47345 * 253.42358 * 1 2 3 25 25 H 1.09001 * 109.46835 * 13.42952 * 1 2 3 26 26 H 1.09000 * 109.47131 * 133.42502 * 1 2 3 27 27 H 1.08995 * 109.46953 * 239.99736 * 2 1 3 28 28 H 1.08996 * 109.47212 * 223.99156 * 3 2 1 29 29 H 1.09003 * 109.47242 * 343.99283 * 3 2 1 30 30 H 1.09007 * 109.47310 * 103.98884 * 3 2 1 31 31 H 1.08997 * 109.47016 * 29.99173 * 5 4 2 32 32 H 1.08996 * 109.47259 * 149.99774 * 5 4 2 33 33 H 0.97001 * 119.99714 * 179.97438 * 9 8 6 34 34 H 1.07999 * 120.00200 * 359.97438 * 17 16 14 35 35 H 1.07994 * 120.00617 * 179.97438 * 18 17 16 36 36 H 1.08001 * 120.00446 * 179.74542 * 22 19 18 37 37 H 1.07998 * 119.99825 * 180.21051 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8853 -1.8639 1.0620 6 6 2.0390 -3.1091 0.9963 7 1 0.9629 -3.0340 1.0487 8 6 2.6384 -4.3441 0.8682 9 7 3.9488 -4.4355 0.8039 10 14 1.5892 -5.8874 0.7860 11 1 0.6806 -5.8065 -0.3858 12 1 2.4681 -7.0767 0.6502 13 1 0.7851 -6.0061 2.0287 14 6 1.6699 -0.2466 2.4201 15 8 2.4434 -0.3601 3.3507 16 6 0.3462 0.3789 2.6308 17 6 -0.4031 0.0616 3.7653 18 6 -1.6360 0.6434 3.9615 19 6 -2.1364 1.5515 3.0256 20 6 -3.4184 2.1562 3.2289 21 7 -4.4346 2.6371 3.3911 22 6 -1.3887 1.8651 1.8882 23 6 -0.1538 1.2866 1.6949 24 1 -0.3634 -0.2932 0.9849 25 1 -0.3633 0.9996 -0.2387 26 1 -0.3633 -0.7064 -0.7464 27 1 1.8933 -0.5139 -0.8899 28 1 2.8582 1.5386 -0.7137 29 1 1.2298 2.1143 -0.2834 30 1 2.3954 1.7022 0.9972 31 1 3.4755 -1.7771 0.1498 32 1 3.5523 -1.9230 1.9221 33 1 4.3705 -5.3044 0.7141 34 1 -0.0164 -0.6409 4.4888 35 1 -2.2157 0.3976 4.8389 36 1 -1.7771 2.5640 1.1623 37 1 0.4258 1.5316 0.8172 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044414979.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:53 Heat of formation + Delta-G solvation = 80.958268 kcal Electronic energy + Delta-G solvation = -20778.504658 eV Core-core repulsion = 17716.738550 eV Total energy + Delta-G solvation = -3061.766109 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.31811 -39.61334 -38.07352 -37.36308 -35.34397 -33.58056 -32.46363 -31.55964 -29.21450 -27.92727 -26.24767 -24.35729 -24.17087 -22.85672 -20.44001 -19.70561 -18.62701 -17.85394 -17.51535 -16.51484 -16.47765 -16.37863 -15.73343 -15.41280 -15.08025 -14.99193 -14.63149 -14.43401 -14.09499 -13.92251 -13.85763 -13.53806 -13.41078 -13.16981 -13.08009 -12.73915 -12.67654 -12.41228 -12.14507 -12.08503 -11.92416 -11.65782 -11.24866 -10.84860 -10.62620 -9.98473 -9.40416 -9.26968 -8.20146 -6.36666 -0.50690 0.41369 1.39221 1.42210 1.45353 1.51249 1.59422 1.98141 2.30734 2.43215 2.79147 2.87435 3.09149 3.57190 3.82939 3.88853 3.94732 4.16691 4.24804 4.32165 4.47855 4.60216 4.71958 4.76454 4.92601 4.99022 5.04109 5.06583 5.13320 5.22832 5.24771 5.27812 5.37222 5.52536 5.61960 5.72524 5.92286 6.07597 6.40991 6.70755 6.77640 7.17853 7.37351 8.85865 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.020411 B = 0.005415 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.446589 B = 5169.522462 C = 5650.919745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.122 3.878 3 C -0.176 4.176 4 N -0.612 5.612 5 C 0.263 3.737 6 C -0.545 4.545 7 H 0.061 0.939 8 C 0.011 3.989 9 N -0.928 5.928 10 Si 0.965 3.035 11 H -0.261 1.261 12 H -0.282 1.282 13 H -0.274 1.274 14 C 0.561 3.439 15 O -0.581 6.581 16 C -0.133 4.133 17 C -0.078 4.078 18 C -0.082 4.082 19 C -0.005 4.005 20 C 0.284 3.716 21 N -0.456 5.456 22 C -0.093 4.093 23 C -0.082 4.082 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.117 0.883 30 H 0.048 0.952 31 H 0.022 0.978 32 H -0.003 1.003 33 H 0.267 0.733 34 H 0.124 0.876 35 H 0.155 0.845 36 H 0.175 0.825 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.618 13.048 -2.763 17.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.019 3.981 3 C -0.233 4.233 4 N -0.344 5.344 5 C 0.142 3.858 6 C -0.584 4.584 7 H 0.079 0.921 8 C -0.189 4.189 9 N -0.567 5.567 10 Si 0.789 3.211 11 H -0.185 1.185 12 H -0.208 1.208 13 H -0.200 1.200 14 C 0.351 3.649 15 O -0.462 6.462 16 C -0.137 4.137 17 C -0.097 4.097 18 C -0.103 4.103 19 C -0.009 4.009 20 C -0.031 4.031 21 N -0.132 5.132 22 C -0.113 4.113 23 C -0.098 4.098 24 H 0.098 0.902 25 H 0.136 0.864 26 H 0.077 0.923 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.135 0.865 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.016 0.984 33 H 0.076 0.924 34 H 0.142 0.858 35 H 0.173 0.827 36 H 0.193 0.807 37 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -11.617 13.596 -2.076 18.003 hybrid contribution 0.672 -1.742 0.228 1.881 sum -10.944 11.854 -1.848 16.239 Atomic orbital electron populations 1.23758 0.93965 1.04276 1.03466 1.21431 0.95486 0.93652 0.87506 1.22704 1.03557 0.94341 1.02712 1.48019 1.50952 1.30182 1.05236 1.18808 0.89281 0.81972 0.95722 1.21744 0.93694 0.91940 1.50980 0.92119 1.25837 0.96144 1.02417 0.94460 1.70056 1.10328 1.25950 1.50416 0.85503 0.78490 0.78007 0.79063 1.18540 1.20762 1.19979 1.18787 0.86598 0.77008 0.82494 1.90681 1.53494 1.57462 1.44537 1.20282 0.94604 1.00870 0.97989 1.21075 0.94165 0.99013 0.95486 1.21106 0.94734 0.95060 0.99352 1.16124 0.87902 0.98895 0.97968 1.25691 0.92458 0.92474 0.92490 1.81281 1.12444 1.10388 1.09062 1.21317 0.93127 1.00113 0.96727 1.23047 0.97085 0.91919 0.97777 0.90228 0.86388 0.92298 0.89384 0.90629 0.86472 0.93309 0.96043 0.98448 0.92416 0.85774 0.82689 0.80717 0.78663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.31 7.71 71.98 0.56 -3.75 16 2 C 0.12 3.44 3.27 44.99 0.15 3.58 16 3 C -0.18 -3.53 8.36 71.98 0.60 -2.92 16 4 N -0.61 -24.77 2.38 -805.46 -1.91 -26.68 16 5 C 0.26 13.73 5.32 85.63 0.46 14.19 16 6 C -0.55 -29.81 9.39 25.60 0.24 -29.57 16 7 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 8 C 0.01 0.60 5.46 84.65 0.46 1.06 16 9 N -0.93 -54.70 13.29 21.45 0.28 -54.41 16 10 Si 0.97 43.04 29.54 68.60 2.03 45.07 16 11 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 14 C 0.56 22.81 5.85 86.81 0.51 23.32 16 15 O -0.58 -29.10 16.80 -3.83 -0.06 -29.17 16 16 C -0.13 -3.90 4.28 -20.04 -0.09 -3.99 16 17 C -0.08 -2.09 9.64 22.48 0.22 -1.87 16 18 C -0.08 -1.61 9.74 22.50 0.22 -1.39 16 19 C -0.01 -0.09 5.73 -21.34 -0.12 -0.21 16 20 C 0.28 5.54 15.32 88.33 1.35 6.89 16 21 N -0.46 -11.01 18.54 19.00 0.35 -10.66 16 22 C -0.09 -1.34 9.47 22.50 0.21 -1.13 16 23 C -0.08 -1.59 4.88 22.48 0.11 -1.48 16 24 H 0.08 2.05 4.00 -11.16 -0.04 2.01 16 25 H 0.12 1.42 5.23 -2.39 -0.01 1.40 16 26 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.09 2.63 7.80 -2.39 -0.02 2.61 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.12 1.23 6.17 -2.39 -0.01 1.22 16 30 H 0.05 1.19 6.83 -2.38 -0.02 1.17 16 31 H 0.02 1.15 7.93 -2.39 -0.02 1.13 16 32 H 0.00 -0.16 7.36 -2.39 -0.02 -0.18 16 33 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 34 H 0.12 3.62 8.06 -2.91 -0.02 3.60 16 35 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 36 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 37 H 0.20 3.18 1.05 -4.22 0.00 3.17 16 Total: -1.00 -73.40 309.22 6.63 -66.77 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 1.07 Total: 6.35 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 4.87 Total: 2.72 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -1.28 Total: -91.75 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.06 Total: -29.17 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -73.40 6.63 -66.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044414979.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.732 kcal (2) G-P(sol) polarization free energy of solvation -73.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds