Wall clock time and date at job start Mon Mar 30 2020 01:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47091 * 2 1 4 4 N 1.46502 * 109.46841 * 180.02562 * 3 2 1 5 5 C 1.36888 * 119.99711 * 279.91874 * 4 3 2 6 6 H 1.07996 * 119.99949 * 38.35105 * 5 4 3 7 7 C 1.39032 * 119.99661 * 218.34730 * 5 4 3 8 8 N 1.31377 * 120.00175 * 26.96937 * 7 5 4 9 9 Si 1.86799 * 119.99801 * 206.97061 * 7 5 4 10 10 H 1.48500 * 109.47015 * 90.00098 * 9 7 5 11 11 H 1.48493 * 109.47328 * 209.99998 * 9 7 5 12 12 H 1.48497 * 109.47061 * 330.00416 * 9 7 5 13 13 C 1.34772 * 120.00009 * 99.92256 * 4 3 2 14 14 O 1.21636 * 119.99993 * 186.99445 * 13 4 3 15 15 C 1.47452 * 120.00066 * 6.99961 * 13 4 3 16 16 C 1.40303 * 119.84057 * 330.81580 * 15 13 4 17 17 C 1.36173 * 120.37283 * 180.29742 * 16 15 13 18 18 C 1.39937 * 119.97134 * 359.69197 * 17 16 15 19 19 C 1.46240 * 133.83006 * 180.02562 * 18 17 16 20 20 C 1.34473 * 107.03994 * 179.97438 * 19 18 17 21 21 N 1.36573 * 109.97391 * 359.97438 * 20 19 18 22 22 H 0.97000 * 125.07406 * 179.97438 * 21 20 19 23 23 C 1.37839 * 109.85251 * 0.02562 * 21 20 19 24 24 C 1.38656 * 133.35974 * 179.97438 * 23 21 20 25 25 H 1.08994 * 109.47466 * 59.99293 * 1 2 3 26 26 H 1.09004 * 109.47356 * 179.97438 * 1 2 3 27 27 H 1.09010 * 109.46948 * 299.99632 * 1 2 3 28 28 H 1.08998 * 109.46629 * 240.00078 * 2 1 3 29 29 H 1.08999 * 109.46833 * 120.00418 * 2 1 3 30 30 H 1.09000 * 109.46808 * 60.00460 * 3 2 1 31 31 H 1.08995 * 109.47238 * 300.00207 * 3 2 1 32 32 H 0.96999 * 119.99843 * 184.98485 * 8 7 5 33 33 H 1.08001 * 119.81238 * 359.97438 * 16 15 13 34 34 H 1.08004 * 120.01217 * 179.70678 * 17 16 15 35 35 H 1.08001 * 126.48132 * 359.97438 * 19 18 17 36 36 H 1.07998 * 125.02034 * 180.02562 * 20 19 18 37 37 H 1.08000 * 120.17607 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1899 1.2380 1.1669 6 1 3.8249 0.5225 1.8888 7 6 5.3554 1.9514 1.4231 8 7 5.5338 3.1347 0.8810 9 14 6.6676 1.2274 2.5381 10 1 7.6259 0.4359 1.7256 11 1 7.3919 2.3250 3.2278 12 1 6.0280 0.3456 3.5474 13 6 4.1784 1.6437 -1.1506 14 8 5.3880 1.5179 -1.1771 15 6 3.4489 2.0164 -2.3766 16 6 2.1243 1.5908 -2.5574 17 6 1.4424 1.9236 -3.6882 18 6 2.0611 2.6999 -4.6746 19 6 1.6299 3.2222 -5.9707 20 6 2.6653 3.9112 -6.4821 21 7 3.7231 3.8727 -5.6191 22 1 4.5818 4.2976 -5.7706 23 6 3.3886 3.1390 -4.5011 24 6 4.0762 2.7954 -3.3471 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9562 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 6.3760 3.6009 1.0006 33 1 1.6445 0.9914 -1.7979 34 1 0.4245 1.5889 -3.8235 35 1 0.6627 3.0813 -6.4302 36 1 2.6609 4.4206 -7.4344 37 1 5.0941 3.1263 -3.2029 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048953613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:48 Heat of formation + Delta-G solvation = 60.970029 kcal Electronic energy + Delta-G solvation = -20887.526490 eV Core-core repulsion = 17824.893626 eV Total energy + Delta-G solvation = -3062.632864 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.92251 -38.89690 -35.93620 -35.20496 -32.74669 -31.53931 -31.10723 -29.19985 -28.52476 -25.83561 -24.68365 -22.59502 -21.86447 -20.84789 -20.48313 -19.35651 -17.89028 -16.65803 -16.24671 -15.67966 -14.69538 -14.40013 -14.20809 -13.95283 -13.62540 -13.58686 -13.35879 -13.23411 -12.85641 -12.60201 -12.02685 -11.92996 -11.55227 -11.31642 -11.23536 -10.90134 -10.72343 -10.64085 -10.50042 -10.35746 -10.16722 -9.75185 -9.37055 -8.70821 -8.13850 -7.73477 -7.38065 -7.16166 -6.15974 -3.78891 1.40932 1.95658 2.91271 3.32753 3.37084 3.43211 3.47595 4.05901 4.32643 4.73890 4.94600 4.98714 5.15330 5.33960 5.43664 5.48152 5.50571 5.64582 5.73381 5.76079 5.89959 5.96374 6.03368 6.21861 6.23093 6.29886 6.35357 6.42924 6.48948 6.70267 6.82686 6.94483 6.98366 7.04791 7.10721 7.51686 7.63470 7.73042 8.24690 9.03860 9.21109 9.65852 10.30518 10.91891 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019827 B = 0.006355 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.843952 B = 4405.157357 C = 5616.906084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.145 4.145 3 C 0.066 3.934 4 N -0.437 5.437 5 C -0.348 4.348 6 H 0.083 0.917 7 C 0.078 3.922 8 N -0.825 5.825 9 Si 0.904 3.096 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.273 1.273 13 C 0.509 3.491 14 O -0.548 6.548 15 C -0.074 4.074 16 C -0.154 4.154 17 C -0.089 4.089 18 C -0.108 4.108 19 C -0.211 4.211 20 C 0.044 3.956 21 N -0.597 5.597 22 H 0.413 0.587 23 C 0.086 3.914 24 C -0.082 4.082 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.265 0.735 33 H 0.162 0.838 34 H 0.119 0.881 35 H 0.142 0.858 36 H 0.165 0.835 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.405 0.400 -10.687 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.183 4.183 3 C -0.058 4.058 4 N -0.156 5.156 5 C -0.474 4.474 6 H 0.100 0.900 7 C -0.133 4.133 8 N -0.458 5.458 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.198 1.198 13 C 0.298 3.702 14 O -0.429 6.429 15 C -0.079 4.079 16 C -0.173 4.173 17 C -0.108 4.108 18 C -0.113 4.113 19 C -0.237 4.237 20 C -0.083 4.083 21 N -0.199 5.199 22 H 0.249 0.751 23 C -0.020 4.020 24 C -0.104 4.104 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.179 0.821 34 H 0.137 0.863 35 H 0.159 0.841 36 H 0.182 0.818 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.588 0.597 -10.656 13.699 hybrid contribution 1.085 0.102 0.343 1.142 sum -7.503 0.698 -10.313 12.773 Atomic orbital electron populations 1.21754 0.96155 1.01173 1.01670 1.21971 0.94858 0.98844 1.02667 1.22563 0.84659 0.95490 1.03083 1.43150 1.02805 1.63472 1.06203 1.18977 1.09203 1.22114 0.97071 0.89975 1.25099 0.99217 0.92734 0.96245 1.69947 1.23955 1.09698 1.42249 0.86346 0.82035 0.78941 0.79645 1.20215 1.21486 1.19783 1.17654 0.87201 0.83367 0.82012 1.90589 1.13946 1.53881 1.84448 1.20129 0.93993 0.97837 0.95957 1.22020 0.94369 1.02738 0.98164 1.20149 0.99472 0.98557 0.92638 1.19279 0.93568 1.02353 0.96055 1.21629 0.99593 1.06367 0.96099 1.21722 0.87642 1.02971 0.96007 1.41735 1.14718 1.47174 1.16318 0.75050 1.18166 0.95416 0.98562 0.89832 1.20063 0.99891 0.99631 0.90852 0.92873 0.93056 0.92691 0.91920 0.91178 0.91924 0.88742 0.92460 0.82118 0.86301 0.84062 0.81767 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.84 37.16 0.37 -1.54 16 2 C -0.14 -2.42 5.24 -26.73 -0.14 -2.56 16 3 C 0.07 1.32 4.84 -4.04 -0.02 1.30 16 4 N -0.44 -11.23 2.56 -116.02 -0.30 -11.52 16 5 C -0.35 -9.70 9.15 -15.00 -0.14 -9.83 16 6 H 0.08 2.19 7.96 -52.49 -0.42 1.77 16 7 C 0.08 2.24 4.08 -17.45 -0.07 2.17 16 8 N -0.83 -24.81 12.10 55.50 0.67 -24.14 16 9 Si 0.90 22.26 29.63 -169.99 -5.04 17.23 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.51 13.63 6.65 -12.51 -0.08 13.54 16 14 O -0.55 -16.80 14.62 5.25 0.08 -16.72 16 15 C -0.07 -1.65 5.62 -104.95 -0.59 -2.24 16 16 C -0.15 -2.84 7.43 -39.55 -0.29 -3.13 16 17 C -0.09 -1.44 10.03 -39.69 -0.40 -1.84 16 18 C -0.11 -1.78 6.37 -105.04 -0.67 -2.45 16 19 C -0.21 -2.76 11.08 -37.70 -0.42 -3.18 16 20 C 0.04 0.50 11.81 -16.77 -0.20 0.30 16 21 N -0.60 -7.95 6.07 -10.68 -0.06 -8.01 16 22 H 0.41 4.34 8.96 -40.82 -0.37 3.97 16 23 C 0.09 1.51 7.26 -84.00 -0.61 0.90 16 24 C -0.08 -1.71 9.61 -39.01 -0.37 -2.09 16 25 H 0.05 0.61 7.84 -51.93 -0.41 0.20 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.06 1.06 7.23 -51.93 -0.38 0.69 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.26 8.12 -51.93 -0.42 0.84 16 31 H 0.10 1.78 3.78 -56.68 -0.21 1.57 16 32 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.16 2.74 2.26 -52.49 -0.12 2.62 16 34 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 35 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.13 2.70 7.89 -52.49 -0.41 2.29 16 LS Contribution 306.27 15.07 4.62 4.62 Total: -1.00 -34.94 306.27 -8.08 -43.02 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -4.41 Total: 6.19 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -3.64 Total: -10.66 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.31 Total: -43.68 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: 0.08 Total: -16.72 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.04 Total: 17.23 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.94 -8.08 -43.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048953613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.994 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds