Wall clock time and date at job start Mon Mar 30 2020 01:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.46990 * 2 1 4 4 C 1.37097 * 120.00000 * 264.76475 * 3 2 1 5 5 H 1.07993 * 119.99829 * 138.84818 * 4 3 2 6 6 C 1.38947 * 120.00125 * 318.85499 * 4 3 2 7 7 N 1.31410 * 120.00409 * 341.83370 * 6 4 3 8 8 Si 1.86801 * 120.00000 * 161.83058 * 6 4 3 9 9 H 1.48504 * 109.47318 * 59.99840 * 8 6 4 10 10 H 1.48501 * 109.47346 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47065 * 300.00045 * 8 6 4 12 12 C 1.34777 * 119.99828 * 84.77123 * 3 2 1 13 13 O 1.21299 * 119.99688 * 180.02562 * 12 3 2 14 14 C 1.50695 * 120.00214 * 359.97438 * 12 3 2 15 15 C 1.52999 * 109.47081 * 180.02562 * 14 12 3 16 16 C 1.50704 * 109.47178 * 180.02562 * 15 14 12 17 17 C 1.38356 * 119.84877 * 89.99574 * 16 15 14 18 18 C 1.37952 * 120.15279 * 180.02562 * 17 16 15 19 19 C 1.39627 * 119.84635 * 0.02562 * 18 17 16 20 20 C 1.43197 * 120.15147 * 180.02562 * 19 18 17 21 21 N 9.61937 * 83.01678 * 94.15731 * 2 1 3 22 22 C 1.39635 * 119.69572 * 0.27816 * 19 18 17 23 23 C 1.37949 * 119.84818 * 359.41955 * 22 19 18 24 24 H 1.08999 * 109.47159 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47531 * 300.00060 * 1 2 3 26 26 H 1.08998 * 109.47464 * 60.00460 * 1 2 3 27 27 H 1.08996 * 109.47531 * 239.99940 * 2 1 3 28 28 H 1.08999 * 109.47163 * 119.99994 * 2 1 3 29 29 H 0.96996 * 120.00594 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47230 * 60.00255 * 14 12 3 31 31 H 1.08998 * 109.47464 * 300.00414 * 14 12 3 32 32 H 1.08996 * 109.47523 * 60.00144 * 15 14 12 33 33 H 1.09000 * 109.47332 * 299.99885 * 15 14 12 34 34 H 1.08008 * 119.92734 * 0.02774 * 17 16 15 35 35 H 1.07998 * 120.07599 * 179.97438 * 18 17 16 36 36 H 1.08005 * 120.07334 * 179.70271 * 22 19 18 37 37 H 1.08001 * 119.92239 * 180.27989 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3489 1.9914 -1.1823 5 1 2.0742 3.0217 -1.3535 6 6 3.0372 1.2842 -2.1605 7 7 3.6791 0.1818 -1.8451 8 14 3.0501 1.9005 -3.9238 9 1 3.6537 3.2566 -3.9699 10 1 3.8493 0.9746 -4.7660 11 1 1.6579 1.9607 -4.4373 12 6 2.1426 2.0520 1.1624 13 8 2.5464 3.1958 1.1623 14 6 1.7787 1.3815 2.4619 15 6 2.0097 2.3544 3.6200 16 6 1.6465 1.6836 4.9197 17 6 2.6073 0.9791 5.6231 18 6 2.2815 0.3622 6.8132 19 6 0.9786 0.4496 7.3073 20 6 0.6334 -0.1877 8.5423 21 7 0.3604 -0.6922 9.5229 22 6 0.0123 1.1569 6.5890 23 6 0.3534 1.7742 5.4034 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.1599 -0.3118 -2.5278 30 1 2.4002 0.4968 2.6008 31 1 0.7292 1.0881 2.4382 32 1 1.3881 3.2388 3.4810 33 1 3.0591 2.6481 3.6440 34 1 3.6148 0.9120 5.2396 35 1 3.0324 -0.1877 7.3610 36 1 -0.9986 1.2244 6.9632 37 1 -0.3919 2.3254 4.8492 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049426764.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:02 Heat of formation + Delta-G solvation = 9.238829 kcal Electronic energy + Delta-G solvation = -19671.451839 eV Core-core repulsion = 16606.575743 eV Total energy + Delta-G solvation = -3064.876097 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.76582 -38.54380 -36.70014 -35.07753 -33.72852 -32.05163 -31.24384 -29.87139 -29.42143 -25.90754 -24.17488 -22.91646 -22.33334 -21.51352 -19.06865 -18.69934 -16.83195 -16.21157 -15.86798 -15.23341 -14.96149 -14.62627 -14.35111 -14.28864 -14.10685 -13.67325 -13.23450 -13.03186 -12.93900 -12.87102 -12.60481 -12.31453 -11.85588 -11.61238 -11.44812 -11.30280 -11.19695 -11.03471 -10.91050 -10.70010 -10.37047 -10.29341 -10.08693 -9.19175 -8.93045 -8.87284 -8.35595 -7.42540 -6.32506 -4.01065 0.61863 1.18638 2.47831 2.78652 3.19227 3.24782 3.28032 3.70695 3.71745 3.92680 4.15919 4.66535 4.67391 4.70012 4.98102 5.07724 5.21258 5.25688 5.50085 5.53123 5.62383 5.79579 5.82093 5.83685 6.06446 6.11543 6.12522 6.15038 6.24102 6.36881 6.47362 6.52166 6.62179 6.70353 6.86345 7.20929 7.29278 7.57838 8.29790 8.51580 9.19895 9.40533 10.02442 10.72658 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.038004 B = 0.003444 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.581009 B = 8128.971024 C = 8273.676211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 N -0.442 5.442 4 C -0.310 4.310 5 H 0.087 0.913 6 C 0.039 3.961 7 N -0.873 5.873 8 Si 0.917 3.083 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.461 3.539 13 O -0.583 6.583 14 C -0.129 4.129 15 C -0.071 4.071 16 C -0.037 4.037 17 C -0.119 4.119 18 C -0.066 4.066 19 C -0.048 4.048 20 C 0.261 3.739 21 N -0.430 5.430 22 C -0.067 4.067 23 C -0.120 4.120 24 H 0.050 0.950 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.048 0.952 29 H 0.268 0.732 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.246 -1.749 10.948 12.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.021 4.021 3 N -0.161 5.161 4 C -0.438 4.438 5 H 0.104 0.896 6 C -0.166 4.166 7 N -0.510 5.510 8 Si 0.744 3.256 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.249 3.751 13 O -0.467 6.467 14 C -0.169 4.169 15 C -0.109 4.109 16 C -0.038 4.038 17 C -0.137 4.137 18 C -0.087 4.087 19 C -0.052 4.052 20 C -0.054 4.054 21 N -0.106 5.106 22 C -0.088 4.088 23 C -0.138 4.138 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.120 0.880 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.348 -2.129 12.348 13.623 hybrid contribution 0.140 0.156 -1.266 1.284 sum -5.208 -1.973 11.081 12.402 Atomic orbital electron populations 1.22222 0.98272 1.00345 1.01507 1.21446 0.91563 0.85675 1.03430 1.43455 1.56061 1.11717 1.04897 1.19321 1.34888 0.98497 0.91087 0.89557 1.25413 0.94069 0.96557 1.00518 1.69909 1.29464 1.17567 1.34076 0.86153 0.78352 0.78857 0.82247 1.19741 1.21006 1.19912 1.20355 0.81930 0.87897 0.84909 1.90521 1.50361 1.18824 1.86950 1.21625 1.02569 0.99156 0.93553 1.20466 1.03729 0.97792 0.88867 1.20438 0.93164 0.94285 0.95879 1.21106 1.00329 0.97743 0.94493 1.21154 0.94234 0.97601 0.95713 1.15971 0.95417 1.03202 0.90561 1.25805 0.93466 0.93225 0.92889 1.81242 1.07960 1.09847 1.11512 1.21141 0.98453 0.94942 0.94236 1.21075 0.96468 1.00387 0.95843 0.93143 0.93816 0.92472 0.87976 0.93315 0.92242 0.90004 0.90259 0.89989 0.89872 0.84675 0.85172 0.85211 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 10.15 37.15 0.38 -2.42 16 2 C 0.10 2.12 5.41 -4.04 -0.02 2.10 16 3 N -0.44 -10.72 2.50 -114.82 -0.29 -11.01 16 4 C -0.31 -8.37 8.84 -14.93 -0.13 -8.50 16 5 H 0.09 2.44 7.82 -52.49 -0.41 2.03 16 6 C 0.04 1.01 4.95 -17.47 -0.09 0.92 16 7 N -0.87 -23.11 11.61 55.50 0.64 -22.46 16 8 Si 0.92 20.25 29.59 -169.99 -5.03 15.22 16 9 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 12 C 0.46 10.55 7.59 -10.99 -0.08 10.47 16 13 O -0.58 -15.41 15.89 5.54 0.09 -15.33 16 14 C -0.13 -2.10 4.29 -27.89 -0.12 -2.22 16 15 C -0.07 -0.99 4.63 -27.88 -0.13 -1.12 16 16 C -0.04 -0.41 5.14 -104.53 -0.54 -0.94 16 17 C -0.12 -1.18 9.68 -39.64 -0.38 -1.56 16 18 C -0.07 -0.60 9.76 -39.17 -0.38 -0.98 16 19 C -0.05 -0.46 5.73 -106.93 -0.61 -1.07 16 20 C 0.26 2.88 15.33 -22.47 -0.34 2.53 16 21 N -0.43 -5.66 18.54 41.84 0.78 -4.88 16 22 C -0.07 -0.59 9.76 -39.17 -0.38 -0.97 16 23 C -0.12 -1.15 9.68 -39.64 -0.38 -1.53 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.68 6.60 -51.93 -0.34 0.33 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.10 2.36 5.76 -51.93 -0.30 2.06 16 28 H 0.05 0.91 6.66 -51.93 -0.35 0.56 16 29 H 0.27 6.71 8.31 -40.82 -0.34 6.38 16 30 H 0.08 1.27 7.41 -51.93 -0.38 0.89 16 31 H 0.08 1.16 6.54 -51.93 -0.34 0.82 16 32 H 0.08 1.18 8.04 -51.93 -0.42 0.77 16 33 H 0.08 1.24 8.04 -51.93 -0.42 0.83 16 34 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 37 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 324.06 15.07 4.88 4.88 Total: -1.00 -31.01 324.06 -6.78 -37.79 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -4.63 Total: 1.09 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -3.22 Total: -5.30 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 1.13 Total: -38.35 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.09 Total: -15.33 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.01 -6.78 -37.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426764.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.029 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds