Wall clock time and date at job start Mon Mar 30 2020 01:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.46990 * 2 1 4 4 C 1.37097 * 120.00000 * 264.76475 * 3 2 1 5 5 H 1.07993 * 119.99829 * 138.84818 * 4 3 2 6 6 C 1.38947 * 120.00125 * 318.85499 * 4 3 2 7 7 N 1.31410 * 120.00409 * 341.83370 * 6 4 3 8 8 Si 1.86801 * 120.00000 * 161.83058 * 6 4 3 9 9 H 1.48504 * 109.47318 * 59.99840 * 8 6 4 10 10 H 1.48501 * 109.47346 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47065 * 300.00045 * 8 6 4 12 12 C 1.34777 * 119.99828 * 84.77123 * 3 2 1 13 13 O 1.21299 * 119.99688 * 180.02562 * 12 3 2 14 14 C 1.50695 * 120.00214 * 359.97438 * 12 3 2 15 15 C 1.52999 * 109.47081 * 180.02562 * 14 12 3 16 16 C 1.50704 * 109.47178 * 180.02562 * 15 14 12 17 17 C 1.38356 * 119.84877 * 89.99574 * 16 15 14 18 18 C 1.37952 * 120.15279 * 180.02562 * 17 16 15 19 19 C 1.39627 * 119.84635 * 0.02562 * 18 17 16 20 20 C 1.43197 * 120.15147 * 180.02562 * 19 18 17 21 21 N 9.61937 * 83.01678 * 94.15731 * 2 1 3 22 22 C 1.39635 * 119.69572 * 0.27816 * 19 18 17 23 23 C 1.37949 * 119.84818 * 359.41955 * 22 19 18 24 24 H 1.08999 * 109.47159 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47531 * 300.00060 * 1 2 3 26 26 H 1.08998 * 109.47464 * 60.00460 * 1 2 3 27 27 H 1.08996 * 109.47531 * 239.99940 * 2 1 3 28 28 H 1.08999 * 109.47163 * 119.99994 * 2 1 3 29 29 H 0.96996 * 120.00594 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47230 * 60.00255 * 14 12 3 31 31 H 1.08998 * 109.47464 * 300.00414 * 14 12 3 32 32 H 1.08996 * 109.47523 * 60.00144 * 15 14 12 33 33 H 1.09000 * 109.47332 * 299.99885 * 15 14 12 34 34 H 1.08008 * 119.92734 * 0.02774 * 17 16 15 35 35 H 1.07998 * 120.07599 * 179.97438 * 18 17 16 36 36 H 1.08005 * 120.07334 * 179.70271 * 22 19 18 37 37 H 1.08001 * 119.92239 * 180.27989 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3489 1.9914 -1.1823 5 1 2.0742 3.0217 -1.3535 6 6 3.0372 1.2842 -2.1605 7 7 3.6791 0.1818 -1.8451 8 14 3.0501 1.9005 -3.9238 9 1 3.6537 3.2566 -3.9699 10 1 3.8493 0.9746 -4.7660 11 1 1.6579 1.9607 -4.4373 12 6 2.1426 2.0520 1.1624 13 8 2.5464 3.1958 1.1623 14 6 1.7787 1.3815 2.4619 15 6 2.0097 2.3544 3.6200 16 6 1.6465 1.6836 4.9197 17 6 2.6073 0.9791 5.6231 18 6 2.2815 0.3622 6.8132 19 6 0.9786 0.4496 7.3073 20 6 0.6334 -0.1877 8.5423 21 7 0.3604 -0.6922 9.5229 22 6 0.0123 1.1569 6.5890 23 6 0.3534 1.7742 5.4034 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.1599 -0.3118 -2.5278 30 1 2.4002 0.4968 2.6008 31 1 0.7292 1.0881 2.4382 32 1 1.3881 3.2388 3.4810 33 1 3.0591 2.6481 3.6440 34 1 3.6148 0.9120 5.2396 35 1 3.0324 -0.1877 7.3610 36 1 -0.9986 1.2244 6.9632 37 1 -0.3919 2.3254 4.8492 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049426764.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:02 Heat of formation + Delta-G solvation = -7.176349 kcal Electronic energy + Delta-G solvation = -19672.163655 eV Core-core repulsion = 16606.575743 eV Total energy + Delta-G solvation = -3065.587912 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.73391 -40.11593 -37.63844 -36.86363 -34.89284 -33.90289 -31.96004 -31.15374 -30.89613 -27.45930 -25.63198 -23.85180 -23.63325 -22.62822 -20.40448 -19.83498 -18.67070 -17.76811 -17.03141 -16.69005 -16.10324 -15.95954 -15.78419 -15.41682 -15.06553 -14.65616 -14.48642 -14.37735 -14.18997 -13.88509 -13.77264 -13.52833 -13.49887 -13.17986 -12.85420 -12.67120 -12.51490 -12.31316 -12.20086 -12.10942 -12.00062 -11.82296 -11.57012 -10.83129 -10.29345 -9.89330 -9.63512 -9.33269 -8.29499 -6.05545 -0.17453 0.48304 1.41810 1.43178 1.52758 1.62487 1.94859 2.15310 2.33731 2.89219 2.92417 3.06275 3.19618 3.84595 3.93400 4.04867 4.23202 4.30664 4.36398 4.45448 4.49566 4.58011 4.70065 4.76884 4.87741 4.92840 5.03799 5.12558 5.20367 5.32693 5.35306 5.37271 5.39758 5.50259 5.61710 5.74055 5.93415 6.29097 6.45498 6.62062 7.25388 7.55943 8.16380 8.73701 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.038004 B = 0.003444 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.581009 B = 8128.971024 C = 8273.676211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.102 3.898 3 N -0.458 5.458 4 C -0.341 4.341 5 H 0.060 0.940 6 C 0.004 3.996 7 N -0.892 5.892 8 Si 0.977 3.023 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.264 1.264 12 C 0.447 3.553 13 O -0.630 6.630 14 C -0.114 4.114 15 C -0.062 4.062 16 C -0.045 4.045 17 C -0.122 4.122 18 C -0.060 4.060 19 C -0.051 4.051 20 C 0.283 3.717 21 N -0.470 5.470 22 C -0.059 4.059 23 C -0.119 4.119 24 H 0.082 0.918 25 H 0.060 0.940 26 H 0.038 0.962 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.272 0.728 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.273 -2.813 11.667 13.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.021 4.021 3 N -0.177 5.177 4 C -0.469 4.469 5 H 0.078 0.922 6 C -0.199 4.199 7 N -0.529 5.529 8 Si 0.801 3.199 9 H -0.204 1.204 10 H -0.198 1.198 11 H -0.189 1.189 12 C 0.237 3.763 13 O -0.517 6.517 14 C -0.153 4.153 15 C -0.099 4.099 16 C -0.046 4.046 17 C -0.140 4.140 18 C -0.081 4.081 19 C -0.054 4.054 20 C -0.031 4.031 21 N -0.146 5.146 22 C -0.079 4.079 23 C -0.136 4.136 24 H 0.101 0.899 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.169 0.831 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.391 -3.225 13.074 14.906 hybrid contribution 0.490 0.503 -1.463 1.623 sum -5.901 -2.723 11.611 13.306 Atomic orbital electron populations 1.22113 0.95279 1.02432 1.01430 1.21541 0.93985 0.83574 1.03020 1.43770 1.56300 1.12994 1.04670 1.19286 1.36367 0.98039 0.93258 0.92245 1.26103 0.93320 0.96676 1.03761 1.69976 1.29560 1.18206 1.35201 0.85251 0.78802 0.77997 0.77839 1.20408 1.19846 1.18864 1.21446 0.80710 0.87459 0.86647 1.90479 1.52248 1.21035 1.87934 1.21550 1.04054 0.99282 0.90458 1.20281 1.02629 0.97274 0.89752 1.20187 0.94285 0.95243 0.94892 1.21184 1.00477 0.97631 0.94742 1.21303 0.94457 0.97064 0.95246 1.16063 0.95927 1.03390 0.90058 1.25919 0.92317 0.92249 0.92591 1.81272 1.09297 1.11292 1.12786 1.21334 0.99294 0.93776 0.93514 1.21196 0.96055 1.00282 0.96117 0.89894 0.92134 0.94302 0.90696 0.91310 0.91880 0.88779 0.87786 0.90832 0.91551 0.84116 0.83372 0.83069 0.83489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 10.15 71.98 0.73 -4.18 16 2 C 0.10 4.12 5.41 86.38 0.47 4.59 16 3 N -0.46 -22.50 2.50 -635.55 -1.59 -24.09 16 4 C -0.34 -18.98 8.84 84.04 0.74 -18.24 16 5 H 0.06 3.54 7.82 -2.91 -0.02 3.51 16 6 C 0.00 0.20 4.95 84.93 0.42 0.62 16 7 N -0.89 -47.55 11.61 21.66 0.25 -47.30 16 8 Si 0.98 41.89 29.59 68.60 2.03 43.92 16 9 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 12 C 0.45 20.71 7.59 87.66 0.67 21.37 16 13 O -0.63 -34.49 15.89 -3.09 -0.05 -34.54 16 14 C -0.11 -3.55 4.29 29.85 0.13 -3.43 16 15 C -0.06 -1.67 4.63 29.85 0.14 -1.53 16 16 C -0.05 -0.90 5.14 -19.81 -0.10 -1.00 16 17 C -0.12 -2.15 9.68 22.23 0.22 -1.93 16 18 C -0.06 -0.92 9.76 22.54 0.22 -0.70 16 19 C -0.05 -0.82 5.73 -21.36 -0.12 -0.95 16 20 C 0.28 5.61 15.33 88.33 1.35 6.97 16 21 N -0.47 -11.68 18.54 19.00 0.35 -11.33 16 22 C -0.06 -0.84 9.76 22.54 0.22 -0.62 16 23 C -0.12 -1.92 9.68 22.23 0.22 -1.71 16 24 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.06 1.70 6.60 -2.39 -0.02 1.69 16 26 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 3.45 5.76 -2.39 -0.01 3.44 16 28 H 0.07 2.44 6.66 -2.39 -0.02 2.42 16 29 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 30 H 0.09 2.73 7.41 -2.39 -0.02 2.72 16 31 H 0.10 2.74 6.54 -2.39 -0.02 2.73 16 32 H 0.07 2.10 8.04 -2.39 -0.02 2.08 16 33 H 0.07 2.00 8.04 -2.39 -0.02 1.98 16 34 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 35 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -69.21 324.06 7.36 -61.84 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 1.08 Total: 12.22 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 5.29 Total: -0.72 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -0.99 Total: -82.72 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.05 Total: -34.54 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -69.21 7.36 -61.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426764.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.668 kcal (2) G-P(sol) polarization free energy of solvation -69.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds