Wall clock time and date at job start Mon Mar 30 2020 01:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46508 * 109.47257 * 2 1 4 4 C 1.37100 * 119.99758 * 264.75934 * 3 2 1 5 5 H 1.08002 * 119.99872 * 138.82665 * 4 3 2 6 6 C 1.38939 * 120.00188 * 318.81993 * 4 3 2 7 7 N 1.31420 * 120.00144 * 341.84441 * 6 4 3 8 8 Si 1.86800 * 120.00140 * 161.84113 * 6 4 3 9 9 H 1.48502 * 109.46916 * 60.00363 * 8 6 4 10 10 H 1.48502 * 109.47086 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47333 * 300.00339 * 8 6 4 12 12 C 1.34775 * 119.99648 * 84.74853 * 3 2 1 13 13 O 1.21298 * 119.99345 * 180.02562 * 12 3 2 14 14 C 1.50699 * 120.00178 * 0.28430 * 12 3 2 15 15 C 1.50699 * 109.46675 * 179.71875 * 14 12 3 16 16 C 1.34234 * 126.50424 * 264.68119 * 15 14 12 17 17 N 1.36833 * 109.93142 * 179.83849 * 16 15 14 18 18 H 0.97000 * 125.06506 * 180.19235 * 17 16 15 19 19 C 1.37680 * 109.87330 * 0.44691 * 17 16 15 20 20 C 1.39130 * 133.50866 * 179.71254 * 19 17 16 21 21 C 1.37754 * 119.77734 * 180.02562 * 20 19 17 22 22 C 1.38825 * 120.66785 * 359.97438 * 21 20 19 23 23 C 1.36627 * 120.52989 * 0.02562 * 22 21 20 24 24 C 1.39633 * 119.76370 * 359.97438 * 23 22 21 25 25 H 1.09003 * 109.47058 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47213 * 299.99713 * 1 2 3 27 27 H 1.08999 * 109.47173 * 60.00282 * 1 2 3 28 28 H 1.09003 * 109.47530 * 240.00173 * 2 1 3 29 29 H 1.09001 * 109.47597 * 120.00029 * 2 1 3 30 30 H 0.96996 * 120.00169 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47082 * 299.71832 * 14 12 3 32 32 H 1.08998 * 109.46932 * 59.72127 * 14 12 3 33 33 H 1.08003 * 125.03564 * 359.97438 * 16 15 14 34 34 H 1.07996 * 120.11355 * 0.02562 * 20 19 17 35 35 H 1.07997 * 119.66128 * 180.02562 * 21 20 19 36 36 H 1.08007 * 119.73824 * 180.02562 * 22 21 20 37 37 H 1.07999 * 120.11857 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3491 1.9914 -1.1824 5 1 2.0742 3.0217 -1.3538 6 6 3.0380 1.2843 -2.1601 7 7 3.6802 0.1820 -1.8442 8 14 3.0515 1.9004 -3.9235 9 1 3.6548 3.2565 -3.9694 10 1 3.8514 0.9746 -4.7652 11 1 1.6597 1.9601 -4.4377 12 6 2.1422 2.0522 1.1623 13 8 2.5461 3.1959 1.1622 14 6 1.7845 1.3794 2.4625 15 6 2.0174 2.3358 3.6036 16 6 3.1193 2.4161 4.3660 17 7 2.9695 3.4051 5.2997 18 1 3.6342 3.6521 5.9614 19 6 1.7323 3.9937 5.1635 20 6 1.0799 5.0195 5.8402 21 6 -0.1903 5.3916 5.4583 22 6 -0.8278 4.7534 4.4030 23 6 -0.2057 3.7437 3.7247 24 6 1.0819 3.3503 4.0950 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 4.1615 -0.3114 -2.5267 31 1 0.7350 1.0858 2.4429 32 1 2.4069 0.4948 2.5971 33 1 3.9953 1.7938 4.2572 34 1 1.5676 5.5224 6.6622 35 1 -0.6948 6.1883 5.9846 36 1 -1.8236 5.0576 4.1159 37 1 -0.7081 3.2515 2.9051 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049426988.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:59 Heat of formation + Delta-G solvation = 25.244544 kcal Electronic energy + Delta-G solvation = -20532.440460 eV Core-core repulsion = 17468.258423 eV Total energy + Delta-G solvation = -3064.182037 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.94266 -38.32626 -36.61133 -34.83699 -32.65023 -31.84251 -29.82119 -29.32375 -28.97910 -26.90567 -24.46730 -22.56677 -22.17231 -21.47689 -19.90031 -18.35338 -17.36211 -16.65669 -16.09618 -15.74988 -15.20994 -14.87767 -14.23499 -14.00882 -13.93128 -13.65424 -13.45363 -12.85012 -12.62673 -12.40730 -12.12710 -11.88347 -11.63240 -11.40918 -11.36333 -10.98730 -10.94155 -10.87998 -10.51870 -10.31447 -10.22800 -10.01397 -9.29676 -8.82623 -8.24604 -7.90687 -7.31597 -7.27006 -6.23391 -3.90981 1.42495 1.91729 3.03410 3.25205 3.29626 3.34073 3.41352 4.07817 4.19530 4.27316 4.99185 5.04387 5.10265 5.17290 5.25114 5.39144 5.57818 5.65859 5.81492 5.90915 5.99705 6.03326 6.13047 6.17633 6.24080 6.29926 6.39320 6.53464 6.60128 6.75038 6.88841 6.93952 7.02606 7.14754 7.29491 7.46593 7.66531 7.82201 8.40684 8.64869 9.32380 9.52053 10.17215 10.81890 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026342 B = 0.004770 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.705181 B = 5868.776211 C = 5942.479630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.104 3.896 3 N -0.448 5.448 4 C -0.304 4.304 5 H 0.085 0.915 6 C 0.037 3.963 7 N -0.875 5.875 8 Si 0.916 3.084 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.467 3.533 13 O -0.570 6.570 14 C -0.067 4.067 15 C -0.126 4.126 16 C 0.048 3.952 17 N -0.598 5.598 18 H 0.411 0.589 19 C 0.095 3.905 20 C -0.136 4.136 21 C -0.105 4.105 22 C -0.155 4.155 23 C -0.060 4.060 24 C -0.088 4.088 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.102 0.898 29 H 0.047 0.953 30 H 0.266 0.734 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.167 0.833 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.374 0.985 12.921 14.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.020 4.020 3 N -0.168 5.168 4 C -0.433 4.433 5 H 0.103 0.897 6 C -0.166 4.166 7 N -0.513 5.513 8 Si 0.743 3.257 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.255 3.745 13 O -0.452 6.452 14 C -0.108 4.108 15 C -0.133 4.133 16 C -0.077 4.077 17 N -0.201 5.201 18 H 0.247 0.753 19 C -0.013 4.013 20 C -0.157 4.157 21 C -0.125 4.125 22 C -0.175 4.175 23 C -0.079 4.079 24 C -0.093 4.093 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.120 0.880 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.184 0.816 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.929 1.406 12.865 13.849 hybrid contribution 0.492 0.218 -0.665 0.856 sum -4.437 1.624 12.200 13.083 Atomic orbital electron populations 1.22234 0.98405 1.00252 1.01514 1.21430 0.91495 0.85808 1.03313 1.43446 1.56877 1.11702 1.04804 1.19304 1.34447 0.98409 0.91093 0.89748 1.25385 0.94195 0.96639 1.00397 1.69920 1.29811 1.17700 1.33906 0.86175 0.78300 0.78780 0.82473 1.19858 1.21069 1.19953 1.20348 0.81736 0.87900 0.84551 1.90534 1.49235 1.18646 1.86772 1.20068 1.02502 0.96802 0.91391 1.19809 0.94211 1.00366 0.98944 1.21505 0.99595 0.94147 0.92460 1.41596 1.14549 1.32058 1.31894 0.75261 1.18232 0.86651 0.97597 0.98777 1.19918 0.95899 0.98162 1.01751 1.20690 0.94228 0.99825 0.97710 1.20540 1.00425 0.98493 0.98014 1.20296 0.93032 0.96323 0.98226 1.19057 0.94929 0.98322 0.96966 0.93202 0.93822 0.92504 0.88016 0.93416 0.92407 0.89791 0.89560 0.81587 0.86800 0.86296 0.86452 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 10.15 37.15 0.38 -2.59 16 2 C 0.10 2.24 5.41 -4.04 -0.02 2.22 16 3 N -0.45 -11.43 2.50 -114.81 -0.29 -11.72 16 4 C -0.30 -8.58 8.84 -14.94 -0.13 -8.71 16 5 H 0.08 2.50 7.82 -52.49 -0.41 2.09 16 6 C 0.04 1.01 4.95 -17.47 -0.09 0.92 16 7 N -0.88 -23.88 11.61 55.50 0.64 -23.23 16 8 Si 0.92 20.99 29.59 -169.99 -5.03 15.96 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 C 0.47 11.63 7.59 -10.99 -0.08 11.55 16 13 O -0.57 -16.51 15.95 5.54 0.09 -16.42 16 14 C -0.07 -1.28 4.84 -29.04 -0.14 -1.42 16 15 C -0.13 -2.34 4.81 -102.71 -0.49 -2.84 16 16 C 0.05 0.76 11.73 -16.73 -0.20 0.56 16 17 N -0.60 -8.41 6.07 -10.65 -0.06 -8.47 16 18 H 0.41 4.17 8.96 -40.82 -0.37 3.81 16 19 C 0.09 1.52 7.28 -83.99 -0.61 0.91 16 20 C -0.14 -1.87 10.08 -39.43 -0.40 -2.27 16 21 C -0.11 -1.38 10.01 -39.54 -0.40 -1.78 16 22 C -0.16 -2.22 9.97 -39.95 -0.40 -2.62 16 23 C -0.06 -1.02 10.05 -39.64 -0.40 -1.42 16 24 C -0.09 -1.60 6.35 -105.14 -0.67 -2.27 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.73 6.62 -51.93 -0.34 0.39 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.10 2.43 5.76 -51.93 -0.30 2.13 16 29 H 0.05 0.93 6.65 -51.93 -0.35 0.58 16 30 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.08 1.46 6.56 -51.93 -0.34 1.12 16 32 H 0.09 1.49 7.41 -51.93 -0.38 1.11 16 33 H 0.17 2.19 8.06 -52.48 -0.42 1.77 16 34 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 37 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 313.76 15.07 4.73 4.73 Total: -1.00 -33.88 313.76 -8.15 -42.03 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -4.58 Total: 6.88 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -3.65 Total: -9.75 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.29 Total: -43.42 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.09 Total: -16.42 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.88 -8.15 -42.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426988.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.274 kcal (2) G-P(sol) polarization free energy of solvation -33.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds