Wall clock time and date at job start Mon Mar 30 2020 01:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46508 * 109.47257 * 2 1 4 4 C 1.37100 * 119.99758 * 264.75934 * 3 2 1 5 5 H 1.08002 * 119.99872 * 138.82665 * 4 3 2 6 6 C 1.38939 * 120.00188 * 318.81993 * 4 3 2 7 7 N 1.31420 * 120.00144 * 341.84441 * 6 4 3 8 8 Si 1.86800 * 120.00140 * 161.84113 * 6 4 3 9 9 H 1.48502 * 109.46916 * 60.00363 * 8 6 4 10 10 H 1.48502 * 109.47086 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47333 * 300.00339 * 8 6 4 12 12 C 1.34775 * 119.99648 * 84.74853 * 3 2 1 13 13 O 1.21298 * 119.99345 * 180.02562 * 12 3 2 14 14 C 1.50699 * 120.00178 * 0.28430 * 12 3 2 15 15 C 1.50699 * 109.46675 * 179.71875 * 14 12 3 16 16 C 1.34234 * 126.50424 * 264.68119 * 15 14 12 17 17 N 1.36833 * 109.93142 * 179.83849 * 16 15 14 18 18 H 0.97000 * 125.06506 * 180.19235 * 17 16 15 19 19 C 1.37680 * 109.87330 * 0.44691 * 17 16 15 20 20 C 1.39130 * 133.50866 * 179.71254 * 19 17 16 21 21 C 1.37754 * 119.77734 * 180.02562 * 20 19 17 22 22 C 1.38825 * 120.66785 * 359.97438 * 21 20 19 23 23 C 1.36627 * 120.52989 * 0.02562 * 22 21 20 24 24 C 1.39633 * 119.76370 * 359.97438 * 23 22 21 25 25 H 1.09003 * 109.47058 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47213 * 299.99713 * 1 2 3 27 27 H 1.08999 * 109.47173 * 60.00282 * 1 2 3 28 28 H 1.09003 * 109.47530 * 240.00173 * 2 1 3 29 29 H 1.09001 * 109.47597 * 120.00029 * 2 1 3 30 30 H 0.96996 * 120.00169 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47082 * 299.71832 * 14 12 3 32 32 H 1.08998 * 109.46932 * 59.72127 * 14 12 3 33 33 H 1.08003 * 125.03564 * 359.97438 * 16 15 14 34 34 H 1.07996 * 120.11355 * 0.02562 * 20 19 17 35 35 H 1.07997 * 119.66128 * 180.02562 * 21 20 19 36 36 H 1.08007 * 119.73824 * 180.02562 * 22 21 20 37 37 H 1.07999 * 120.11857 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3491 1.9914 -1.1824 5 1 2.0742 3.0217 -1.3538 6 6 3.0380 1.2843 -2.1601 7 7 3.6802 0.1820 -1.8442 8 14 3.0515 1.9004 -3.9235 9 1 3.6548 3.2565 -3.9694 10 1 3.8514 0.9746 -4.7652 11 1 1.6597 1.9601 -4.4377 12 6 2.1422 2.0522 1.1623 13 8 2.5461 3.1959 1.1622 14 6 1.7845 1.3794 2.4625 15 6 2.0174 2.3358 3.6036 16 6 3.1193 2.4161 4.3660 17 7 2.9695 3.4051 5.2997 18 1 3.6342 3.6521 5.9614 19 6 1.7323 3.9937 5.1635 20 6 1.0799 5.0195 5.8402 21 6 -0.1903 5.3916 5.4583 22 6 -0.8278 4.7534 4.4030 23 6 -0.2057 3.7437 3.7247 24 6 1.0819 3.3503 4.0950 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 4.1615 -0.3114 -2.5267 31 1 0.7350 1.0858 2.4429 32 1 2.4069 0.4948 2.5971 33 1 3.9953 1.7938 4.2572 34 1 1.5676 5.5224 6.6622 35 1 -0.6948 6.1883 5.9846 36 1 -1.8236 5.0576 4.1159 37 1 -0.7081 3.2515 2.9051 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049426988.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:59 Heat of formation + Delta-G solvation = 4.643748 kcal Electronic energy + Delta-G solvation = -20533.333778 eV Core-core repulsion = 17468.258423 eV Total energy + Delta-G solvation = -3065.075354 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.12172 -40.20600 -37.73191 -36.78297 -34.25325 -33.57736 -31.14719 -31.00823 -30.13067 -28.38642 -26.37163 -23.87448 -23.69265 -22.60741 -21.51522 -19.82603 -18.64547 -18.60148 -17.62848 -17.27404 -16.78111 -16.29855 -15.92531 -15.71950 -15.22631 -14.88239 -14.65435 -14.47255 -14.32140 -13.89151 -13.65062 -13.40212 -13.27821 -12.82910 -12.80976 -12.62585 -12.50591 -12.34522 -12.14561 -12.07474 -11.77227 -11.61158 -10.83281 -10.56857 -10.16716 -9.31992 -9.06023 -8.49930 -8.28169 -6.04834 0.27687 0.77496 1.40615 1.41032 1.51099 1.77120 2.18306 2.32545 2.35015 3.02666 3.06055 3.30797 3.87546 3.97521 4.15418 4.27030 4.27442 4.37584 4.46313 4.51515 4.63112 4.70327 4.73812 4.83054 4.91676 4.98124 5.09524 5.11206 5.29158 5.34559 5.49230 5.59687 5.62523 5.74961 5.84981 5.90780 6.29241 6.31370 6.65246 6.81264 7.27576 7.56230 8.20239 8.74323 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026342 B = 0.004770 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.705181 B = 5868.776211 C = 5942.479630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.102 3.898 3 N -0.460 5.460 4 C -0.339 4.339 5 H 0.054 0.946 6 C 0.005 3.995 7 N -0.892 5.892 8 Si 0.978 3.022 9 H -0.281 1.281 10 H -0.270 1.270 11 H -0.264 1.264 12 C 0.455 3.545 13 O -0.622 6.622 14 C -0.048 4.048 15 C -0.173 4.173 16 C 0.058 3.942 17 N -0.584 5.584 18 H 0.430 0.570 19 C 0.076 3.924 20 C -0.134 4.134 21 C -0.106 4.106 22 C -0.153 4.153 23 C -0.095 4.095 24 C -0.123 4.123 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.272 0.728 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.191 0.809 34 H 0.148 0.852 35 H 0.157 0.843 36 H 0.141 0.859 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.777 0.950 14.296 15.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.021 4.021 3 N -0.180 5.180 4 C -0.467 4.467 5 H 0.072 0.928 6 C -0.197 4.197 7 N -0.529 5.529 8 Si 0.801 3.199 9 H -0.206 1.206 10 H -0.195 1.195 11 H -0.189 1.189 12 C 0.245 3.755 13 O -0.508 6.508 14 C -0.089 4.089 15 C -0.181 4.181 16 C -0.069 4.069 17 N -0.189 5.189 18 H 0.270 0.730 19 C -0.031 4.031 20 C -0.154 4.154 21 C -0.125 4.125 22 C -0.172 4.172 23 C -0.114 4.114 24 C -0.127 4.127 25 H 0.104 0.896 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.208 0.792 34 H 0.165 0.835 35 H 0.174 0.826 36 H 0.158 0.842 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.340 1.341 14.268 15.293 hybrid contribution 0.625 0.270 -1.035 1.239 sum -4.715 1.610 13.233 14.140 Atomic orbital electron populations 1.22120 0.95571 1.02456 1.01143 1.21549 0.93807 0.83622 1.03108 1.43740 1.56806 1.12987 1.04436 1.19233 1.36354 0.97886 0.93268 0.92810 1.26081 0.93241 0.96693 1.03687 1.69982 1.29591 1.18196 1.35169 0.85254 0.78823 0.77936 0.77856 1.20650 1.19480 1.18888 1.21319 0.80578 0.87422 0.86171 1.90476 1.51550 1.21011 1.87779 1.19884 1.03508 0.97014 0.88465 1.19937 0.96035 1.01978 1.00128 1.21881 0.99320 0.93968 0.91721 1.41563 1.14491 1.31097 1.31704 0.73021 1.18570 0.87259 0.98398 0.98878 1.20382 0.96039 0.97068 1.01947 1.21166 0.94121 1.00103 0.97074 1.20902 1.01322 0.97272 0.97704 1.20441 0.93492 0.98186 0.99269 1.19390 0.95784 0.99205 0.98362 0.89608 0.92818 0.94255 0.90353 0.91312 0.91855 0.88423 0.87704 0.79208 0.83463 0.82558 0.84168 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.42 10.15 71.98 0.73 -4.69 16 2 C 0.10 4.43 5.41 86.38 0.47 4.89 16 3 N -0.46 -24.17 2.50 -635.53 -1.59 -25.76 16 4 C -0.34 -19.86 8.84 84.04 0.74 -19.12 16 5 H 0.05 3.40 7.82 -2.91 -0.02 3.38 16 6 C 0.01 0.29 4.95 84.92 0.42 0.71 16 7 N -0.89 -48.95 11.61 21.66 0.25 -48.69 16 8 Si 0.98 43.53 29.59 68.60 2.03 45.56 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 10 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 11 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 12 C 0.46 23.45 7.59 87.66 0.66 24.11 16 13 O -0.62 -37.82 15.95 -3.09 -0.05 -37.87 16 14 C -0.05 -1.87 4.84 29.10 0.14 -1.73 16 15 C -0.17 -6.50 4.81 -18.63 -0.09 -6.59 16 16 C 0.06 1.79 11.73 83.00 0.97 2.76 16 17 N -0.58 -15.56 6.07 -187.61 -1.14 -16.70 16 18 H 0.43 7.77 8.96 -92.71 -0.83 6.94 16 19 C 0.08 2.36 7.28 39.03 0.28 2.65 16 20 C -0.13 -3.32 10.08 22.37 0.23 -3.09 16 21 C -0.11 -2.48 10.01 22.30 0.22 -2.26 16 22 C -0.15 -4.20 9.97 22.03 0.22 -3.98 16 23 C -0.10 -3.28 10.05 22.23 0.22 -3.06 16 24 C -0.12 -4.53 6.35 -20.20 -0.13 -4.65 16 25 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.05 1.76 6.62 -2.39 -0.02 1.74 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.08 3.77 5.76 -2.39 -0.01 3.75 16 29 H 0.07 2.62 6.65 -2.39 -0.02 2.61 16 30 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 31 H 0.10 3.41 6.56 -2.39 -0.02 3.39 16 32 H 0.10 3.55 7.41 -2.39 -0.02 3.53 16 33 H 0.19 4.73 8.06 -2.91 -0.02 4.70 16 34 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 35 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.11 3.72 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -76.83 313.76 4.86 -71.97 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.26 Total: 25.54 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 5.10 Total: -14.05 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -2.48 Total: -91.15 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.05 Total: -37.87 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -76.83 4.86 -71.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426988.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.611 kcal (2) G-P(sol) polarization free energy of solvation -76.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds