Wall clock time and date at job start Mon Mar 30 2020 01:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.50701 * 109.46959 * 180.02562 * 15 13 12 17 17 C 1.34240 * 126.50093 * 265.02734 * 16 15 13 18 18 N 1.36831 * 109.93065 * 179.97438 * 17 16 15 19 19 H 0.96998 * 125.06215 * 180.02562 * 18 17 16 20 20 C 1.37689 * 109.87258 * 0.02562 * 18 17 16 21 21 C 1.39120 * 133.50035 * 180.02562 * 20 18 17 22 22 C 1.37749 * 119.77755 * 179.97438 * 21 20 18 23 23 C 1.38838 * 120.66526 * 0.02562 * 22 21 20 24 24 C 1.36626 * 120.52698 * 359.97438 * 23 22 21 25 25 C 1.39634 * 119.76199 * 359.69942 * 24 23 22 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 31 31 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 32 32 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 33 33 H 1.07998 * 125.03048 * 359.97438 * 17 16 15 34 34 H 1.08002 * 120.11303 * 359.95930 * 21 20 18 35 35 H 1.08002 * 119.66947 * 179.97438 * 22 21 20 36 36 H 1.07997 * 119.73459 * 179.97438 * 23 22 21 37 37 H 1.07996 * 120.11927 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 6 2.7002 0.2400 -4.7412 17 6 1.7494 0.4264 -5.6704 18 7 2.1475 1.3879 -6.5588 19 1 1.6276 1.6947 -7.3180 20 6 3.3961 1.8551 -6.2144 21 6 4.2458 2.8107 -6.7626 22 6 5.4651 3.0610 -6.1725 23 6 5.8566 2.3684 -5.0347 24 6 5.0378 1.4258 -4.4799 25 6 3.7945 1.1610 -5.0577 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7089 1.1611 3.4845 30 1 2.2490 -1.6317 -1.1527 31 1 3.6480 -1.1211 -3.3986 32 1 1.9760 -1.5503 -3.8327 33 1 0.8096 -0.1041 -5.7107 34 1 3.9505 3.3543 -7.6479 35 1 6.1235 3.8029 -6.5998 36 1 6.8161 2.5763 -4.5847 37 1 5.3489 0.8913 -3.5945 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336600.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:43 Heat of formation + Delta-G solvation = 12.072946 kcal Electronic energy + Delta-G solvation = -19984.681175 eV Core-core repulsion = 16919.927975 eV Total energy + Delta-G solvation = -3064.753200 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.14283 -38.59847 -36.77040 -34.72103 -32.82508 -32.25436 -30.21728 -29.19908 -28.76017 -26.56846 -25.19551 -22.73356 -21.64936 -21.43583 -19.57188 -19.00873 -17.74998 -16.91367 -16.27143 -15.62432 -15.36818 -15.07326 -14.47868 -14.28883 -14.03150 -13.81825 -13.61488 -12.83921 -12.66493 -12.49358 -12.23900 -11.94307 -11.58646 -11.53561 -11.21950 -11.06191 -10.88422 -10.67040 -10.63224 -10.26670 -10.19169 -9.52176 -8.98581 -8.84662 -8.49805 -8.07565 -7.79070 -7.49459 -6.07775 -4.16780 1.26418 1.76811 2.78841 3.22112 3.26872 3.33709 3.36112 3.57475 4.03438 4.29808 4.54602 4.83377 4.91538 5.07353 5.21292 5.24304 5.35218 5.42035 5.64708 5.74904 5.78843 5.83815 5.99980 6.05228 6.27128 6.58712 6.74076 6.82347 6.88019 6.93216 7.02445 7.21893 7.28969 7.55923 7.62425 7.64935 7.76470 7.98789 8.21077 8.77993 8.86344 9.28041 9.51680 10.98188 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028829 B = 0.003960 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.026896 B = 7069.497081 C = 7530.804762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.714 5.714 13 C 0.500 3.500 14 O -0.546 6.546 15 C -0.070 4.070 16 C -0.138 4.138 17 C 0.055 3.945 18 N -0.597 5.597 19 H 0.413 0.587 20 C 0.095 3.905 21 C -0.135 4.135 22 C -0.103 4.103 23 C -0.152 4.152 24 C -0.063 4.063 25 C -0.088 4.088 26 H 0.088 0.912 27 H 0.013 0.987 28 H 0.025 0.975 29 H 0.264 0.736 30 H 0.387 0.613 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.168 0.832 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.877 -1.685 -18.126 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.211 1.211 12 N -0.363 5.363 13 C 0.284 3.716 14 O -0.424 6.424 15 C -0.111 4.111 16 C -0.146 4.146 17 C -0.071 4.071 18 N -0.200 5.200 19 H 0.249 0.751 20 C -0.012 4.012 21 C -0.156 4.156 22 C -0.122 4.122 23 C -0.171 4.171 24 C -0.081 4.081 25 C -0.093 4.093 26 H 0.107 0.893 27 H 0.032 0.968 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.219 0.781 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.185 0.815 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.477 -0.684 -18.075 18.634 hybrid contribution 0.011 -0.716 0.621 0.948 sum 4.489 -1.400 -17.454 18.076 Atomic orbital electron populations 1.22067 0.98674 0.98943 1.00760 1.18689 0.90880 0.93987 0.80187 0.93526 1.21243 1.32289 1.13121 0.90400 0.92099 1.24897 0.94883 0.94944 0.99045 1.69912 1.36031 1.22463 1.23773 0.86462 0.79164 0.79261 0.82282 1.20598 1.19844 1.21108 1.46521 1.65684 1.13454 1.10605 1.20450 0.78875 0.87692 0.84582 1.90663 1.50559 1.16080 1.85067 1.20031 1.03076 0.96801 0.91209 1.19656 0.94774 1.01951 0.98189 1.21498 0.99295 0.94184 0.92094 1.41614 1.15620 1.35450 1.27289 0.75089 1.18225 0.87041 0.98825 0.97142 1.19944 0.94643 0.99293 1.01714 1.20738 0.95519 0.99723 0.96253 1.20590 1.00394 0.98521 0.97575 1.20313 0.92107 0.97159 0.98538 1.19025 0.95346 0.98869 0.96071 0.89303 0.96770 0.95576 0.92649 0.78076 0.88844 0.88893 0.81524 0.86655 0.86118 0.86246 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.87 2.56 -69.09 -0.18 6.69 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.28 8.73 -34.44 -0.30 -14.58 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.31 11.32 55.43 0.63 -24.68 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.71 -15.01 5.07 -54.93 -0.28 -15.29 16 13 C 0.50 10.13 7.79 -10.98 -0.09 10.04 16 14 O -0.55 -13.59 15.70 5.56 0.09 -13.51 16 15 C -0.07 -1.03 6.23 -29.03 -0.18 -1.21 16 16 C -0.14 -2.13 4.81 -102.71 -0.49 -2.62 16 17 C 0.05 0.71 11.73 -16.73 -0.20 0.51 16 18 N -0.60 -7.10 6.07 -10.65 -0.06 -7.16 16 19 H 0.41 3.39 8.96 -40.82 -0.37 3.02 16 20 C 0.09 1.34 7.28 -83.99 -0.61 0.73 16 21 C -0.14 -1.66 10.08 -39.43 -0.40 -2.06 16 22 C -0.10 -1.23 10.01 -39.54 -0.40 -1.63 16 23 C -0.15 -1.98 9.97 -39.94 -0.40 -2.38 16 24 C -0.06 -0.95 10.05 -39.64 -0.40 -1.35 16 25 C -0.09 -1.42 6.35 -105.14 -0.67 -2.09 16 26 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.39 6.93 8.54 -40.82 -0.35 6.58 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.17 1.64 8.06 -52.49 -0.42 1.21 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 37 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 319.23 15.07 4.81 4.81 Total: -1.00 -33.98 319.23 -8.66 -42.64 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -4.77 Total: 9.01 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -4.05 Total: -11.62 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.28 Total: -47.13 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.98 -8.66 -42.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336600.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.713 kcal (2) G-P(sol) polarization free energy of solvation -33.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds