Wall clock time and date at job start Mon Mar 30 2020 01:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.50701 * 109.46959 * 180.02562 * 15 13 12 17 17 C 1.34240 * 126.50093 * 265.02734 * 16 15 13 18 18 N 1.36831 * 109.93065 * 179.97438 * 17 16 15 19 19 H 0.96998 * 125.06215 * 180.02562 * 18 17 16 20 20 C 1.37689 * 109.87258 * 0.02562 * 18 17 16 21 21 C 1.39120 * 133.50035 * 180.02562 * 20 18 17 22 22 C 1.37749 * 119.77755 * 179.97438 * 21 20 18 23 23 C 1.38838 * 120.66526 * 0.02562 * 22 21 20 24 24 C 1.36626 * 120.52698 * 359.97438 * 23 22 21 25 25 C 1.39634 * 119.76199 * 359.69942 * 24 23 22 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 31 31 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 32 32 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 33 33 H 1.07998 * 125.03048 * 359.97438 * 17 16 15 34 34 H 1.08002 * 120.11303 * 359.95930 * 21 20 18 35 35 H 1.08002 * 119.66947 * 179.97438 * 22 21 20 36 36 H 1.07997 * 119.73459 * 179.97438 * 23 22 21 37 37 H 1.07996 * 120.11927 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 6 2.7002 0.2400 -4.7412 17 6 1.7494 0.4264 -5.6704 18 7 2.1475 1.3879 -6.5588 19 1 1.6276 1.6947 -7.3180 20 6 3.3961 1.8551 -6.2144 21 6 4.2458 2.8107 -6.7626 22 6 5.4651 3.0610 -6.1725 23 6 5.8566 2.3684 -5.0347 24 6 5.0378 1.4258 -4.4799 25 6 3.7945 1.1610 -5.0577 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7089 1.1611 3.4845 30 1 2.2490 -1.6317 -1.1527 31 1 3.6480 -1.1211 -3.3986 32 1 1.9760 -1.5503 -3.8327 33 1 0.8096 -0.1041 -5.7107 34 1 3.9505 3.3543 -7.6479 35 1 6.1235 3.8029 -6.5998 36 1 6.8161 2.5763 -4.5847 37 1 5.3489 0.8913 -3.5945 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336600.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:43 Heat of formation + Delta-G solvation = -10.374724 kcal Electronic energy + Delta-G solvation = -19985.654579 eV Core-core repulsion = 16919.927975 eV Total energy + Delta-G solvation = -3065.726604 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.14437 -40.27784 -37.74749 -36.65138 -34.28671 -33.90769 -31.51980 -30.49545 -30.09514 -27.81003 -27.30014 -23.72497 -23.24458 -22.63580 -21.25347 -20.30344 -18.95100 -18.51236 -17.37624 -17.28671 -17.03246 -16.32402 -15.89574 -15.86764 -15.28486 -14.89700 -14.65022 -14.57209 -14.32919 -13.85533 -13.65010 -13.45556 -12.99997 -12.93158 -12.76173 -12.63628 -12.52611 -12.28053 -12.20616 -12.12382 -11.66682 -11.07621 -10.77217 -10.58295 -10.35082 -9.65211 -9.08099 -8.51494 -8.15526 -6.33357 0.26115 0.75122 1.45426 1.46612 1.57172 1.72267 1.98382 2.32005 2.40028 2.84735 3.08175 3.14819 3.85223 3.95592 4.07966 4.24936 4.33111 4.44434 4.49292 4.65426 4.72467 4.78421 4.85749 4.93758 4.98175 5.06609 5.13063 5.27048 5.47331 5.60425 5.65537 5.73645 5.74305 5.82058 5.88352 5.97251 6.13643 6.29423 6.75887 6.79322 7.10084 7.35378 7.70746 8.90628 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028829 B = 0.003960 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.026896 B = 7069.497081 C = 7530.804762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.270 3.730 3 H -0.009 1.009 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.973 3.027 9 H -0.270 1.270 10 H -0.263 1.263 11 H -0.288 1.288 12 N -0.710 5.710 13 C 0.497 3.503 14 O -0.597 6.597 15 C -0.053 4.053 16 C -0.182 4.182 17 C 0.068 3.932 18 N -0.585 5.585 19 H 0.430 0.570 20 C 0.074 3.926 21 C -0.134 4.134 22 C -0.108 4.108 23 C -0.155 4.155 24 C -0.097 4.097 25 C -0.123 4.123 26 H 0.063 0.937 27 H 0.010 0.990 28 H 0.042 0.958 29 H 0.264 0.736 30 H 0.405 0.595 31 H 0.109 0.891 32 H 0.131 0.869 33 H 0.200 0.800 34 H 0.146 0.854 35 H 0.153 0.847 36 H 0.137 0.863 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.290 -2.970 -19.505 20.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.166 3.834 3 H 0.009 0.991 4 C -0.584 4.584 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.195 1.195 10 H -0.188 1.188 11 H -0.213 1.213 12 N -0.359 5.359 13 C 0.284 3.716 14 O -0.478 6.478 15 C -0.093 4.093 16 C -0.190 4.190 17 C -0.059 4.059 18 N -0.189 5.189 19 H 0.270 0.730 20 C -0.033 4.033 21 C -0.155 4.155 22 C -0.127 4.127 23 C -0.174 4.174 24 C -0.115 4.115 25 C -0.127 4.127 26 H 0.082 0.918 27 H 0.029 0.971 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.240 0.760 31 H 0.127 0.873 32 H 0.149 0.851 33 H 0.217 0.783 34 H 0.164 0.836 35 H 0.171 0.829 36 H 0.155 0.845 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.901 -2.004 -19.502 20.208 hybrid contribution -0.108 -0.230 0.970 1.003 sum 4.793 -2.234 -18.532 19.272 Atomic orbital electron populations 1.21871 0.98377 0.99422 0.99323 1.18277 0.91080 0.91683 0.82323 0.99093 1.21582 1.32465 1.13493 0.90854 0.90775 1.25835 0.94914 0.95568 1.02421 1.70072 1.37208 1.24026 1.24514 0.85328 0.79028 0.78009 0.77862 1.19512 1.18752 1.21342 1.46287 1.65721 1.14213 1.09698 1.21484 0.77322 0.87192 0.85580 1.90633 1.52644 1.18632 1.85938 1.19956 1.04397 0.96985 0.87966 1.19880 0.95919 1.03551 0.99624 1.22023 0.99505 0.93359 0.91016 1.41636 1.15051 1.34727 1.27516 0.73005 1.18539 0.88120 0.99469 0.97173 1.20376 0.94281 0.98505 1.02328 1.21156 0.95989 0.99918 0.95674 1.20917 1.00799 0.97766 0.97923 1.20461 0.93060 0.98825 0.99193 1.19424 0.96014 0.99961 0.97338 0.91796 0.97084 0.93904 0.92639 0.75970 0.87284 0.85112 0.78328 0.83636 0.82914 0.84487 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.80 9.26 71.98 0.67 -6.13 16 2 C 0.27 14.42 2.56 44.24 0.11 14.53 16 3 H -0.01 -0.57 7.58 -2.39 -0.02 -0.58 16 4 C -0.55 -29.42 8.73 25.60 0.22 -29.19 16 5 H 0.07 3.71 7.74 -2.91 -0.02 3.68 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -53.91 11.32 21.45 0.24 -53.66 16 8 Si 0.97 42.51 29.54 68.60 2.03 44.53 16 9 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 10 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 12 N -0.71 -29.89 5.07 -446.10 -2.26 -32.15 16 13 C 0.50 20.29 7.79 87.66 0.68 20.98 16 14 O -0.60 -30.82 15.70 -3.02 -0.05 -30.87 16 15 C -0.05 -1.49 6.23 29.10 0.18 -1.31 16 16 C -0.18 -5.49 4.81 -18.62 -0.09 -5.58 16 17 C 0.07 1.63 11.73 83.00 0.97 2.60 16 18 N -0.59 -12.83 6.07 -187.62 -1.14 -13.97 16 19 H 0.43 6.01 8.96 -92.71 -0.83 5.18 16 20 C 0.07 2.03 7.28 39.03 0.28 2.31 16 21 C -0.13 -3.05 10.08 22.37 0.23 -2.82 16 22 C -0.11 -2.39 10.01 22.30 0.22 -2.17 16 23 C -0.15 -4.00 9.97 22.04 0.22 -3.78 16 24 C -0.10 -3.03 10.05 22.23 0.22 -2.81 16 25 C -0.12 -3.97 6.35 -20.20 -0.13 -4.09 16 26 H 0.06 3.63 6.07 -2.39 -0.01 3.62 16 27 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 30 H 0.41 14.03 8.54 -92.70 -0.79 13.24 16 31 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.20 3.27 8.06 -2.91 -0.02 3.25 16 34 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 35 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 36 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 37 H 0.11 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -76.84 319.23 2.55 -74.29 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: -0.52 Total: 28.17 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 4.25 Total: -16.34 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -3.16 Total: -99.78 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.05 Total: -30.87 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -76.84 2.55 -74.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336600.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.916 kcal (2) G-P(sol) polarization free energy of solvation -76.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds