Wall clock time and date at job start Mon Mar 30 2020 01:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46812 * 2 1 4 4 C 1.50695 * 109.47063 * 239.99851 * 2 1 3 5 5 H 1.07998 * 120.00418 * 245.62304 * 4 2 1 6 6 C 1.37879 * 120.00201 * 65.62961 * 4 2 1 7 7 N 1.31514 * 120.00393 * 197.18198 * 6 4 2 8 8 Si 1.86804 * 119.99786 * 17.45333 * 6 4 2 9 9 H 1.48502 * 109.47029 * 179.72709 * 8 6 4 10 10 H 1.48503 * 109.46948 * 299.72609 * 8 6 4 11 11 H 1.48492 * 109.47033 * 59.72641 * 8 6 4 12 12 N 1.46502 * 109.47016 * 119.99690 * 2 1 3 13 13 C 1.34775 * 120.00053 * 275.00255 * 12 2 1 14 14 O 1.21280 * 120.00115 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99887 * 180.02562 * 13 12 2 16 16 C 1.50705 * 109.47108 * 179.97438 * 15 13 12 17 17 C 1.34233 * 126.50148 * 264.68736 * 16 15 13 18 18 N 1.36835 * 109.92679 * 179.82987 * 17 16 15 19 19 H 0.96997 * 125.06342 * 180.18394 * 18 17 16 20 20 C 1.37681 * 109.87255 * 0.45087 * 18 17 16 21 21 C 1.39131 * 133.50891 * 179.70948 * 20 18 17 22 22 C 1.37747 * 119.78112 * 180.02562 * 21 20 18 23 23 C 1.38830 * 120.66560 * 359.97438 * 22 21 20 24 24 C 1.36628 * 120.52777 * 0.02562 * 23 22 21 25 25 C 1.39625 * 119.76334 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.47065 * 66.34399 * 1 2 3 27 27 H 1.09000 * 109.46665 * 186.33884 * 1 2 3 28 28 H 1.08994 * 109.46957 * 306.33629 * 1 2 3 29 29 H 0.97001 * 119.99221 * 355.17115 * 7 6 4 30 30 H 0.96996 * 119.99659 * 94.99859 * 12 2 1 31 31 H 1.08996 * 109.47190 * 300.00321 * 15 13 12 32 32 H 1.09000 * 109.47003 * 60.00180 * 15 13 12 33 33 H 1.07998 * 125.03436 * 359.97438 * 17 16 15 34 34 H 1.08004 * 120.10968 * 0.04733 * 21 20 18 35 35 H 1.07998 * 119.66750 * 180.02562 * 22 21 20 36 36 H 1.08000 * 119.73833 * 180.02562 * 23 22 21 37 37 H 1.08004 * 120.11297 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7977 -0.1756 -2.4794 7 7 1.9225 -0.9278 -3.5509 8 14 1.3097 1.6194 -2.6501 9 1 1.1227 1.9471 -4.0864 10 1 0.0398 1.8589 -1.9184 11 1 2.3784 2.4792 -2.0813 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6499 -0.7284 3.5875 16 6 2.7010 0.2401 4.7410 17 6 3.7712 0.9401 5.1490 18 7 3.4374 1.7182 6.2240 19 1 4.0443 2.3137 6.6908 20 6 2.1132 1.5254 6.5480 21 6 1.2823 2.0487 7.5337 22 6 -0.0338 1.6481 7.6027 23 6 -0.5417 0.7262 6.6973 24 6 0.2565 0.1996 5.7215 25 6 1.5937 0.5918 5.6332 26 1 -0.3633 0.4124 -0.9413 27 1 -0.3633 -1.0214 0.1135 28 1 -0.3633 0.6089 0.8278 29 1 2.2471 -1.8383 -3.4691 30 1 2.2490 -1.6317 1.1527 31 1 1.9778 -1.5507 3.8325 32 1 3.6493 -1.1201 3.3979 33 1 4.7500 0.8974 4.6947 34 1 1.6678 2.7670 8.2421 35 1 -0.6773 2.0557 8.3682 36 1 -1.5760 0.4229 6.7649 37 1 -0.1455 -0.5173 5.0209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:46 Heat of formation + Delta-G solvation = 12.122097 kcal Electronic energy + Delta-G solvation = -20072.653923 eV Core-core repulsion = 17007.902855 eV Total energy + Delta-G solvation = -3064.751069 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.22507 -38.79063 -36.85354 -34.89922 -32.93010 -32.34928 -30.44144 -29.43416 -29.13707 -26.76115 -24.75596 -22.81150 -21.72862 -21.34963 -19.59819 -19.17364 -17.90322 -17.53710 -16.38063 -16.15289 -15.46345 -15.14422 -14.47067 -14.33435 -13.99477 -13.76642 -13.62971 -12.96429 -12.81010 -12.70577 -12.35901 -12.20843 -11.88575 -11.64365 -11.60947 -11.42249 -11.16307 -10.75436 -10.44028 -9.98418 -9.75785 -9.61001 -9.08250 -8.99090 -8.28960 -8.15521 -8.06758 -7.58081 -6.55203 -4.18298 1.18378 1.68795 2.70647 3.14815 3.39213 3.42445 3.47034 3.62557 3.94692 4.28659 4.44777 4.75276 4.83884 4.99231 5.12729 5.20485 5.27510 5.33168 5.55920 5.62628 5.68644 5.75242 5.91200 5.95267 6.18315 6.45464 6.50844 6.62363 6.65777 6.74274 6.74634 6.84327 7.03813 7.20926 7.36673 7.49929 7.55042 7.72899 8.26676 8.59218 8.76038 9.11576 9.50598 10.85346 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029801 B = 0.004155 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.329450 B = 6737.319290 C = 6952.026378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.242 3.758 3 H 0.039 0.961 4 C -0.616 4.616 5 H 0.061 0.939 6 C 0.038 3.962 7 N -0.900 5.900 8 Si 1.042 2.958 9 H -0.284 1.284 10 H -0.271 1.271 11 H -0.281 1.281 12 N -0.707 5.707 13 C 0.501 3.499 14 O -0.547 6.547 15 C -0.069 4.069 16 C -0.140 4.140 17 C 0.057 3.943 18 N -0.596 5.596 19 H 0.413 0.587 20 C 0.095 3.905 21 C -0.134 4.134 22 C -0.103 4.103 23 C -0.151 4.151 24 C -0.064 4.064 25 C -0.089 4.089 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.029 0.971 29 H 0.268 0.732 30 H 0.392 0.608 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.168 0.832 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.178 1.838 21.698 21.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.138 3.862 3 H 0.057 0.943 4 C -0.654 4.654 5 H 0.079 0.921 6 C -0.168 4.168 7 N -0.533 5.533 8 Si 0.870 3.130 9 H -0.210 1.210 10 H -0.198 1.198 11 H -0.207 1.207 12 N -0.356 5.356 13 C 0.285 3.715 14 O -0.425 6.425 15 C -0.110 4.110 16 C -0.148 4.148 17 C -0.069 4.069 18 N -0.199 5.199 19 H 0.250 0.750 20 C -0.012 4.012 21 C -0.155 4.155 22 C -0.122 4.122 23 C -0.171 4.171 24 C -0.082 4.082 25 C -0.094 4.094 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.224 0.776 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.186 0.814 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.625 3.900 20.618 20.993 hybrid contribution 0.946 -1.392 1.205 2.070 sum 1.571 2.509 21.823 22.023 Atomic orbital electron populations 1.22489 0.99042 1.00016 1.00267 1.18953 0.90470 0.94124 0.82640 0.94331 1.22097 1.41577 1.10503 0.91205 0.92092 1.25677 0.94302 1.05065 0.91770 1.70885 1.41194 1.09904 1.31324 0.84073 0.77662 0.75162 0.76080 1.20952 1.19755 1.20701 1.46284 1.65660 1.13656 1.09982 1.20530 0.78706 0.87695 0.84543 1.90654 1.50683 1.16125 1.85065 1.20003 1.03137 0.97097 0.90768 1.19626 0.92263 1.03992 0.98904 1.21524 0.99806 0.94862 0.90681 1.41626 1.09141 1.39986 1.29150 0.75016 1.18229 0.84777 0.99763 0.98431 1.19960 0.93594 1.03069 0.98879 1.20739 0.94245 0.97965 0.99274 1.20587 0.99761 0.99798 0.96908 1.20288 0.91627 0.98973 0.97337 1.19017 0.94010 0.99533 0.96799 0.92095 0.93807 0.95214 0.92167 0.77552 0.88768 0.88686 0.81439 0.86599 0.86075 0.86251 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 9.16 37.16 0.34 -3.38 16 2 C 0.24 5.94 2.14 -69.08 -0.15 5.79 16 3 H 0.04 1.04 6.23 -51.93 -0.32 0.71 16 4 C -0.62 -16.85 9.00 -34.44 -0.31 -17.16 16 5 H 0.06 1.73 7.96 -52.49 -0.42 1.31 16 6 C 0.04 1.09 5.29 -17.82 -0.09 0.99 16 7 N -0.90 -27.00 13.70 55.43 0.76 -26.24 16 8 Si 1.04 25.59 26.29 -169.99 -4.47 21.12 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.27 -6.29 5.76 56.52 0.33 -5.96 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 N -0.71 -14.45 5.07 -54.93 -0.28 -14.73 16 13 C 0.50 9.71 7.79 -10.99 -0.09 9.62 16 14 O -0.55 -12.89 15.70 5.56 0.09 -12.80 16 15 C -0.07 -0.98 6.23 -29.03 -0.18 -1.16 16 16 C -0.14 -2.08 4.81 -102.71 -0.49 -2.57 16 17 C 0.06 0.71 11.73 -16.73 -0.20 0.51 16 18 N -0.60 -6.78 6.07 -10.65 -0.06 -6.85 16 19 H 0.41 3.21 8.96 -40.82 -0.37 2.84 16 20 C 0.09 1.29 7.28 -83.99 -0.61 0.68 16 21 C -0.13 -1.57 10.08 -39.43 -0.40 -1.96 16 22 C -0.10 -1.16 10.01 -39.54 -0.40 -1.55 16 23 C -0.15 -1.85 9.97 -39.94 -0.40 -2.25 16 24 C -0.06 -0.91 10.05 -39.65 -0.40 -1.31 16 25 C -0.09 -1.36 6.35 -105.14 -0.67 -2.03 16 26 H 0.06 1.45 4.88 -51.93 -0.25 1.20 16 27 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.27 7.94 8.73 -40.82 -0.36 7.59 16 30 H 0.39 7.01 8.53 -40.82 -0.35 6.66 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 37 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 314.84 15.07 4.74 4.74 Total: -1.00 -34.54 314.84 -8.00 -42.54 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -4.74 Total: 7.99 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -4.04 Total: -15.78 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 0.42 Total: -47.82 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -4.47 Total: 21.12 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.54 -8.00 -42.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.662 kcal (2) G-P(sol) polarization free energy of solvation -34.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds