Wall clock time and date at job start Mon Mar 30 2020 01:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46812 * 2 1 4 4 C 1.50695 * 109.47063 * 239.99851 * 2 1 3 5 5 H 1.07998 * 120.00418 * 245.62304 * 4 2 1 6 6 C 1.37879 * 120.00201 * 65.62961 * 4 2 1 7 7 N 1.31514 * 120.00393 * 197.18198 * 6 4 2 8 8 Si 1.86804 * 119.99786 * 17.45333 * 6 4 2 9 9 H 1.48502 * 109.47029 * 179.72709 * 8 6 4 10 10 H 1.48503 * 109.46948 * 299.72609 * 8 6 4 11 11 H 1.48492 * 109.47033 * 59.72641 * 8 6 4 12 12 N 1.46502 * 109.47016 * 119.99690 * 2 1 3 13 13 C 1.34775 * 120.00053 * 275.00255 * 12 2 1 14 14 O 1.21280 * 120.00115 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99887 * 180.02562 * 13 12 2 16 16 C 1.50705 * 109.47108 * 179.97438 * 15 13 12 17 17 C 1.34233 * 126.50148 * 264.68736 * 16 15 13 18 18 N 1.36835 * 109.92679 * 179.82987 * 17 16 15 19 19 H 0.96997 * 125.06342 * 180.18394 * 18 17 16 20 20 C 1.37681 * 109.87255 * 0.45087 * 18 17 16 21 21 C 1.39131 * 133.50891 * 179.70948 * 20 18 17 22 22 C 1.37747 * 119.78112 * 180.02562 * 21 20 18 23 23 C 1.38830 * 120.66560 * 359.97438 * 22 21 20 24 24 C 1.36628 * 120.52777 * 0.02562 * 23 22 21 25 25 C 1.39625 * 119.76334 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.47065 * 66.34399 * 1 2 3 27 27 H 1.09000 * 109.46665 * 186.33884 * 1 2 3 28 28 H 1.08994 * 109.46957 * 306.33629 * 1 2 3 29 29 H 0.97001 * 119.99221 * 355.17115 * 7 6 4 30 30 H 0.96996 * 119.99659 * 94.99859 * 12 2 1 31 31 H 1.08996 * 109.47190 * 300.00321 * 15 13 12 32 32 H 1.09000 * 109.47003 * 60.00180 * 15 13 12 33 33 H 1.07998 * 125.03436 * 359.97438 * 17 16 15 34 34 H 1.08004 * 120.10968 * 0.04733 * 21 20 18 35 35 H 1.07998 * 119.66750 * 180.02562 * 22 21 20 36 36 H 1.08000 * 119.73833 * 180.02562 * 23 22 21 37 37 H 1.08004 * 120.11297 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7977 -0.1756 -2.4794 7 7 1.9225 -0.9278 -3.5509 8 14 1.3097 1.6194 -2.6501 9 1 1.1227 1.9471 -4.0864 10 1 0.0398 1.8589 -1.9184 11 1 2.3784 2.4792 -2.0813 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6499 -0.7284 3.5875 16 6 2.7010 0.2401 4.7410 17 6 3.7712 0.9401 5.1490 18 7 3.4374 1.7182 6.2240 19 1 4.0443 2.3137 6.6908 20 6 2.1132 1.5254 6.5480 21 6 1.2823 2.0487 7.5337 22 6 -0.0338 1.6481 7.6027 23 6 -0.5417 0.7262 6.6973 24 6 0.2565 0.1996 5.7215 25 6 1.5937 0.5918 5.6332 26 1 -0.3633 0.4124 -0.9413 27 1 -0.3633 -1.0214 0.1135 28 1 -0.3633 0.6089 0.8278 29 1 2.2471 -1.8383 -3.4691 30 1 2.2490 -1.6317 1.1527 31 1 1.9778 -1.5507 3.8325 32 1 3.6493 -1.1201 3.3979 33 1 4.7500 0.8974 4.6947 34 1 1.6678 2.7670 8.2421 35 1 -0.6773 2.0557 8.3682 36 1 -1.5760 0.4229 6.7649 37 1 -0.1455 -0.5173 5.0209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:46 Heat of formation + Delta-G solvation = -11.368959 kcal Electronic energy + Delta-G solvation = -20073.672572 eV Core-core repulsion = 17007.902855 eV Total energy + Delta-G solvation = -3065.769718 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.16478 -40.38477 -37.76084 -36.76637 -34.42507 -33.98470 -31.85280 -30.74257 -30.12837 -27.90174 -26.83396 -23.73000 -23.06794 -22.64456 -21.28164 -20.43009 -19.63485 -18.69006 -17.77590 -17.27542 -16.92100 -16.34422 -15.86719 -15.61837 -15.28678 -14.96940 -14.71601 -14.64857 -14.50337 -14.26277 -13.85050 -13.57670 -13.34705 -13.29038 -12.85102 -12.53603 -12.42919 -12.25593 -11.94662 -11.69633 -11.66240 -11.15619 -10.81797 -10.47700 -10.40258 -9.83099 -9.09194 -8.80051 -8.52573 -6.43541 0.25144 0.74568 1.45048 1.49371 1.68052 1.71085 1.89280 2.30306 2.40891 2.71230 3.01266 3.05643 3.83555 3.92592 4.04785 4.22572 4.26487 4.40838 4.46594 4.54064 4.63423 4.69722 4.73895 4.79679 4.84437 4.95290 5.04973 5.12022 5.25658 5.45034 5.59954 5.68267 5.71179 5.73040 5.81395 5.86950 6.02174 6.28429 6.54749 6.77042 6.95541 7.29917 7.56408 8.60227 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029801 B = 0.004155 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.329450 B = 6737.319290 C = 6952.026378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.244 3.756 3 H 0.018 0.982 4 C -0.611 4.611 5 H 0.043 0.957 6 C -0.005 4.005 7 N -0.928 5.928 8 Si 1.073 2.927 9 H -0.280 1.280 10 H -0.251 1.251 11 H -0.275 1.275 12 N -0.708 5.708 13 C 0.500 3.500 14 O -0.590 6.590 15 C -0.054 4.054 16 C -0.181 4.181 17 C 0.067 3.933 18 N -0.585 5.585 19 H 0.430 0.570 20 C 0.075 3.925 21 C -0.135 4.135 22 C -0.108 4.108 23 C -0.154 4.154 24 C -0.095 4.095 25 C -0.121 4.121 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.259 0.741 30 H 0.404 0.596 31 H 0.111 0.889 32 H 0.126 0.874 33 H 0.197 0.803 34 H 0.144 0.856 35 H 0.152 0.848 36 H 0.138 0.862 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 2.717 23.929 24.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.139 3.861 3 H 0.036 0.964 4 C -0.649 4.649 5 H 0.061 0.939 6 C -0.206 4.206 7 N -0.563 5.563 8 Si 0.896 3.104 9 H -0.206 1.206 10 H -0.176 1.176 11 H -0.201 1.201 12 N -0.357 5.357 13 C 0.288 3.712 14 O -0.470 6.470 15 C -0.095 4.095 16 C -0.189 4.189 17 C -0.060 4.060 18 N -0.189 5.189 19 H 0.270 0.730 20 C -0.033 4.033 21 C -0.156 4.156 22 C -0.127 4.127 23 C -0.173 4.173 24 C -0.113 4.113 25 C -0.126 4.126 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.239 0.761 31 H 0.129 0.871 32 H 0.144 0.856 33 H 0.214 0.786 34 H 0.162 0.838 35 H 0.170 0.830 36 H 0.156 0.844 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.765 4.757 22.895 23.396 hybrid contribution 0.940 -1.685 0.609 2.023 sum 1.705 3.072 23.504 23.765 Atomic orbital electron populations 1.22364 0.97963 1.00655 1.00054 1.18658 0.91208 0.92964 0.83256 0.96381 1.22267 1.40501 1.09703 0.92474 0.93910 1.26772 0.94236 1.07719 0.91830 1.70982 1.43342 1.09777 1.32214 0.83673 0.78604 0.71640 0.76514 1.20591 1.17580 1.20075 1.46150 1.65932 1.14242 1.09416 1.21433 0.77269 0.87247 0.85238 1.90625 1.52392 1.18255 1.85760 1.19941 1.04819 0.96882 0.87811 1.19827 0.93220 1.05940 0.99901 1.22010 1.00445 0.93419 0.90162 1.41647 1.08819 1.39696 1.28784 0.73037 1.18547 0.85754 1.00040 0.98933 1.20375 0.93597 1.02955 0.98626 1.21155 0.94653 0.97352 0.99521 1.20918 1.00525 0.99509 0.96358 1.20454 0.92119 1.00187 0.98573 1.19386 0.94656 1.00647 0.97878 0.92775 0.92895 0.94730 0.93207 0.76101 0.87054 0.85645 0.78594 0.83782 0.82988 0.84389 0.86900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.95 9.16 71.98 0.66 -6.29 16 2 C 0.24 11.90 2.14 44.25 0.09 12.00 16 3 H 0.02 0.98 6.23 -2.39 -0.01 0.96 16 4 C -0.61 -33.60 9.00 25.60 0.23 -33.37 16 5 H 0.04 2.46 7.96 -2.91 -0.02 2.43 16 6 C 0.00 -0.27 5.29 84.66 0.45 0.18 16 7 N -0.93 -56.34 13.70 21.45 0.29 -56.05 16 8 Si 1.07 51.28 26.29 68.60 1.80 53.09 16 9 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 10 H -0.25 -11.10 5.76 99.48 0.57 -10.53 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 N -0.71 -28.41 5.07 -446.10 -2.26 -30.67 16 13 C 0.50 19.00 7.79 87.66 0.68 19.68 16 14 O -0.59 -27.64 15.70 -3.03 -0.05 -27.69 16 15 C -0.05 -1.45 6.23 29.10 0.18 -1.27 16 16 C -0.18 -5.13 4.81 -18.63 -0.09 -5.22 16 17 C 0.07 1.52 11.73 83.00 0.97 2.50 16 18 N -0.59 -12.07 6.07 -187.61 -1.14 -13.21 16 19 H 0.43 5.57 8.96 -92.71 -0.83 4.74 16 20 C 0.07 1.90 7.28 39.03 0.28 2.19 16 21 C -0.14 -2.83 10.08 22.37 0.23 -2.61 16 22 C -0.11 -2.17 10.01 22.30 0.22 -1.94 16 23 C -0.15 -3.59 9.97 22.03 0.22 -3.37 16 24 C -0.09 -2.69 10.05 22.23 0.22 -2.47 16 25 C -0.12 -3.62 6.35 -20.20 -0.13 -3.75 16 26 H 0.05 2.52 4.88 -2.39 -0.01 2.51 16 27 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.26 15.67 8.73 -92.71 -0.81 14.86 16 30 H 0.40 14.09 8.53 -92.71 -0.79 13.30 16 31 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.13 2.53 8.14 -2.39 -0.02 2.52 16 33 H 0.20 3.13 8.06 -2.91 -0.02 3.10 16 34 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.11 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -75.17 314.84 2.19 -72.98 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: -0.69 Total: 25.30 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 4.23 Total: -23.75 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -3.11 Total: -99.93 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.05 Total: -27.69 kcal Atomic # 14 Polarization: 51.28 SS G_CDS: 1.80 Total: 53.09 kcal Total: -75.17 2.19 -72.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.610 kcal (2) G-P(sol) polarization free energy of solvation -75.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds