Wall clock time and date at job start Mon Mar 30 2020 01:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36346 * 125.63694 * 2 1 4 4 C 1.34841 * 108.22267 * 180.02562 * 3 2 1 5 5 C 1.40892 * 107.41678 * 359.76703 * 4 3 2 6 6 C 1.34850 * 107.41794 * 0.37878 * 5 4 3 7 7 C 1.50703 * 125.89504 * 179.88341 * 6 5 4 8 8 N 1.46496 * 109.46692 * 94.68969 * 7 6 5 9 9 C 1.39680 * 119.99639 * 180.27516 * 8 7 6 10 10 C 1.39004 * 120.03696 * 359.45635 * 9 8 7 11 11 C 1.38153 * 120.05805 * 179.69776 * 10 9 8 12 12 C 1.38178 * 120.13966 * 0.59482 * 11 10 9 13 13 C 1.38917 * 120.08019 * 359.68190 * 12 11 10 14 14 O 1.35748 * 120.02989 * 179.97438 * 13 12 11 15 15 C 1.34830 * 116.99885 * 174.48418 * 14 13 12 16 16 H 1.07994 * 120.00429 * 5.05947 * 15 14 13 17 17 C 1.38651 * 119.99769 * 185.06351 * 15 14 13 18 18 N 1.31558 * 120.00510 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99836 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47323 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47285 * 119.99655 * 19 17 15 22 22 H 1.48501 * 109.47124 * 239.99208 * 19 17 15 23 23 C 1.38751 * 120.03887 * 179.72791 * 9 8 7 24 24 H 1.09002 * 109.46722 * 269.97451 * 1 2 3 25 25 H 1.08999 * 109.47129 * 29.97648 * 1 2 3 26 26 H 1.08992 * 109.47139 * 149.97906 * 1 2 3 27 27 H 1.08008 * 125.88578 * 359.97438 * 3 2 1 28 28 H 1.08000 * 126.29624 * 180.02562 * 4 3 2 29 29 H 1.07999 * 126.29175 * 180.23964 * 5 4 3 30 30 H 1.09000 * 109.46541 * 334.69241 * 7 6 5 31 31 H 1.08994 * 109.46969 * 214.69490 * 7 6 5 32 32 H 0.96999 * 120.00662 * 0.02562 * 8 7 6 33 33 H 1.07997 * 119.97434 * 359.97053 * 10 9 8 34 34 H 1.07998 * 119.92875 * 180.27364 * 11 10 9 35 35 H 1.08003 * 119.95445 * 179.69909 * 12 11 10 36 36 H 0.96998 * 120.00586 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.07061 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5460 0.7046 -0.0006 5 6 3.5461 -0.7043 0.0045 6 6 2.2594 -1.1081 -0.0005 7 6 1.7819 -2.5375 -0.0002 8 7 1.5140 -2.9624 1.3759 9 6 1.0634 -4.2597 1.6310 10 6 0.8582 -5.1445 0.5787 11 6 0.4185 -6.4297 0.8310 12 6 0.1697 -6.8358 2.1281 13 6 0.3674 -5.9545 3.1836 14 8 0.1222 -6.3544 4.4575 15 6 0.4423 -5.4910 5.4424 16 1 0.7965 -4.5005 5.1982 17 6 0.3167 -5.8750 6.7687 18 7 -0.1152 -7.0815 7.0663 19 14 0.7595 -4.6786 8.1333 20 1 1.2154 -3.3964 7.5389 21 1 -0.4332 -4.4341 8.9837 22 1 1.8487 -5.2544 8.9624 23 6 0.8148 -4.6649 2.9345 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5141 27 1 1.9171 2.1325 -0.0004 28 1 4.4165 1.3438 -0.0003 29 1 4.4166 -1.3435 0.0091 30 1 2.5499 -3.1771 -0.4351 31 1 0.8680 -2.6153 -0.5890 32 1 1.6529 -2.3441 2.1103 33 1 1.0468 -4.8284 -0.4366 34 1 0.2640 -7.1167 0.0122 35 1 -0.1786 -7.8396 2.3215 36 1 -0.2033 -7.3500 7.9942 37 1 0.9697 -3.9782 3.7535 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050595533.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:33 Heat of formation + Delta-G solvation = 55.186256 kcal Electronic energy + Delta-G solvation = -19702.397947 eV Core-core repulsion = 16639.514280 eV Total energy + Delta-G solvation = -3062.883667 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.34477 -38.99997 -37.00148 -34.67493 -32.98083 -32.18094 -30.72553 -28.84102 -27.73792 -26.51093 -25.22522 -24.91522 -21.73255 -20.70109 -20.64098 -19.33034 -17.88439 -17.55704 -16.81509 -15.57026 -15.45201 -14.98420 -14.63745 -14.47066 -14.13533 -13.77787 -13.56283 -13.43281 -13.20228 -12.87528 -12.54896 -12.44512 -12.28872 -12.18049 -11.85248 -11.61346 -11.34000 -10.94632 -10.76842 -10.57810 -10.37233 -9.41254 -9.35948 -8.74550 -8.71642 -8.21989 -7.33316 -6.76768 -6.39372 -3.98528 2.02071 2.39734 2.58276 2.81084 2.88628 3.15068 3.16665 3.21640 3.99181 4.02963 4.59281 4.63729 4.71847 4.94917 4.95730 5.15596 5.21035 5.29228 5.38813 5.49649 5.58083 5.65661 5.71591 5.99483 6.15382 6.24243 6.29390 6.37909 6.64259 6.67242 6.90048 7.05187 7.10413 7.17653 7.22095 7.40442 7.51117 7.68607 8.02446 8.07123 8.21630 9.07013 9.79626 10.79087 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017562 B = 0.004370 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.930937 B = 6405.833324 C = 7533.769265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.442 5.442 3 C -0.013 4.013 4 C -0.204 4.204 5 C -0.178 4.178 6 C -0.002 4.002 7 C 0.204 3.796 8 N -0.751 5.751 9 C 0.249 3.751 10 C -0.281 4.281 11 C -0.040 4.040 12 C -0.236 4.236 13 C 0.190 3.810 14 O -0.179 6.179 15 C -0.388 4.388 16 H 0.091 0.909 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.939 3.061 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.276 1.276 23 C -0.301 4.301 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.160 0.840 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.396 0.604 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.268 0.732 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.687 13.872 -13.974 19.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.118 5.118 3 C -0.143 4.143 4 C -0.229 4.229 5 C -0.204 4.204 6 C -0.113 4.113 7 C 0.079 3.921 8 N -0.384 5.384 9 C 0.148 3.852 10 C -0.303 4.303 11 C -0.059 4.059 12 C -0.257 4.257 13 C 0.135 3.865 14 O -0.082 6.082 15 C -0.465 4.465 16 H 0.108 0.892 17 C -0.165 4.165 18 N -0.500 5.500 19 Si 0.764 3.236 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.325 4.325 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.178 0.822 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.230 0.770 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.078 0.922 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.158 13.528 -13.868 19.493 hybrid contribution 0.302 1.028 0.988 1.458 sum 2.460 14.557 -12.880 19.592 Atomic orbital electron populations 1.22033 0.77294 1.04163 1.03622 1.43961 1.06162 1.05726 1.55963 1.21820 0.90630 0.91279 1.10589 1.20885 0.95929 0.95085 1.10970 1.20778 0.95260 0.95131 1.09210 1.20370 0.90552 0.88437 1.11955 1.19486 0.99661 0.87707 0.85276 1.44621 1.75565 1.11883 1.06312 1.17466 0.91032 0.83628 0.93093 1.20063 1.18335 0.95476 0.96470 1.20375 0.95682 0.94657 0.95142 1.20047 1.14584 0.99986 0.91056 1.19063 0.90037 0.91234 0.86139 1.83986 1.71269 1.42703 1.10234 1.21346 1.45390 0.95596 0.84148 0.89162 1.25263 0.96837 0.97051 0.97394 1.70048 1.42987 1.17741 1.19211 0.85677 0.78369 0.79394 0.80142 1.19249 1.20222 1.20162 1.20499 1.18541 0.98522 0.94931 0.90697 0.90001 0.89694 0.82216 0.84718 0.84610 0.90591 0.92431 0.77041 0.87898 0.87185 0.86910 0.92180 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 10.92 59.84 0.65 1.23 16 2 N -0.44 -4.77 3.15 -119.90 -0.38 -5.15 16 3 C -0.01 -0.13 11.43 -16.75 -0.19 -0.32 16 4 C -0.20 -2.26 10.86 -39.78 -0.43 -2.69 16 5 C -0.18 -2.18 10.77 -39.78 -0.43 -2.61 16 6 C 0.00 -0.02 6.26 -81.79 -0.51 -0.53 16 7 C 0.20 2.57 5.06 -5.19 -0.03 2.54 16 8 N -0.75 -11.55 5.72 -59.83 -0.34 -11.90 16 9 C 0.25 4.69 6.65 -83.81 -0.56 4.13 16 10 C -0.28 -4.99 9.31 -39.33 -0.37 -5.35 16 11 C -0.04 -0.73 10.03 -39.63 -0.40 -1.13 16 12 C -0.24 -5.17 9.99 -39.35 -0.39 -5.57 16 13 C 0.19 4.73 6.64 -39.14 -0.26 4.47 16 14 O -0.18 -5.22 9.76 0.06 0.00 -5.22 16 15 C -0.39 -11.08 9.49 30.88 0.29 -10.79 16 16 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.75 13.67 55.48 0.76 -24.99 16 19 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 C -0.30 -6.74 9.01 -39.20 -0.35 -7.10 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.68 7.12 -51.93 -0.37 0.31 16 27 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 28 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.08 0.94 7.96 -51.93 -0.41 0.53 16 31 H 0.06 0.69 7.01 -51.93 -0.36 0.32 16 32 H 0.40 6.08 8.47 -40.82 -0.35 5.73 16 33 H 0.10 1.56 6.73 -52.49 -0.35 1.20 16 34 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.11 2.40 8.06 -52.48 -0.42 1.98 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.12 2.81 5.64 -52.49 -0.30 2.51 16 LS Contribution 318.09 15.07 4.79 4.79 Total: -1.00 -32.26 318.09 -7.77 -40.03 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -4.51 Total: 9.27 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -3.07 Total: -22.75 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.04 Total: -42.03 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: 0.00 Total: -5.22 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.26 -7.77 -40.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050595533.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.217 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds