Wall clock time and date at job start Mon Mar 30 2020 01:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36346 * 125.63694 * 2 1 4 4 C 1.34841 * 108.22267 * 180.02562 * 3 2 1 5 5 C 1.40892 * 107.41678 * 359.76703 * 4 3 2 6 6 C 1.34850 * 107.41794 * 0.37878 * 5 4 3 7 7 C 1.50703 * 125.89504 * 179.88341 * 6 5 4 8 8 N 1.46496 * 109.46692 * 94.68969 * 7 6 5 9 9 C 1.39680 * 119.99639 * 180.27516 * 8 7 6 10 10 C 1.39004 * 120.03696 * 359.45635 * 9 8 7 11 11 C 1.38153 * 120.05805 * 179.69776 * 10 9 8 12 12 C 1.38178 * 120.13966 * 0.59482 * 11 10 9 13 13 C 1.38917 * 120.08019 * 359.68190 * 12 11 10 14 14 O 1.35748 * 120.02989 * 179.97438 * 13 12 11 15 15 C 1.34830 * 116.99885 * 174.48418 * 14 13 12 16 16 H 1.07994 * 120.00429 * 5.05947 * 15 14 13 17 17 C 1.38651 * 119.99769 * 185.06351 * 15 14 13 18 18 N 1.31558 * 120.00510 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99836 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47323 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47285 * 119.99655 * 19 17 15 22 22 H 1.48501 * 109.47124 * 239.99208 * 19 17 15 23 23 C 1.38751 * 120.03887 * 179.72791 * 9 8 7 24 24 H 1.09002 * 109.46722 * 269.97451 * 1 2 3 25 25 H 1.08999 * 109.47129 * 29.97648 * 1 2 3 26 26 H 1.08992 * 109.47139 * 149.97906 * 1 2 3 27 27 H 1.08008 * 125.88578 * 359.97438 * 3 2 1 28 28 H 1.08000 * 126.29624 * 180.02562 * 4 3 2 29 29 H 1.07999 * 126.29175 * 180.23964 * 5 4 3 30 30 H 1.09000 * 109.46541 * 334.69241 * 7 6 5 31 31 H 1.08994 * 109.46969 * 214.69490 * 7 6 5 32 32 H 0.96999 * 120.00662 * 0.02562 * 8 7 6 33 33 H 1.07997 * 119.97434 * 359.97053 * 10 9 8 34 34 H 1.07998 * 119.92875 * 180.27364 * 11 10 9 35 35 H 1.08003 * 119.95445 * 179.69909 * 12 11 10 36 36 H 0.96998 * 120.00586 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.07061 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5460 0.7046 -0.0006 5 6 3.5461 -0.7043 0.0045 6 6 2.2594 -1.1081 -0.0005 7 6 1.7819 -2.5375 -0.0002 8 7 1.5140 -2.9624 1.3759 9 6 1.0634 -4.2597 1.6310 10 6 0.8582 -5.1445 0.5787 11 6 0.4185 -6.4297 0.8310 12 6 0.1697 -6.8358 2.1281 13 6 0.3674 -5.9545 3.1836 14 8 0.1222 -6.3544 4.4575 15 6 0.4423 -5.4910 5.4424 16 1 0.7965 -4.5005 5.1982 17 6 0.3167 -5.8750 6.7687 18 7 -0.1152 -7.0815 7.0663 19 14 0.7595 -4.6786 8.1333 20 1 1.2154 -3.3964 7.5389 21 1 -0.4332 -4.4341 8.9837 22 1 1.8487 -5.2544 8.9624 23 6 0.8148 -4.6649 2.9345 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5141 27 1 1.9171 2.1325 -0.0004 28 1 4.4165 1.3438 -0.0003 29 1 4.4166 -1.3435 0.0091 30 1 2.5499 -3.1771 -0.4351 31 1 0.8680 -2.6153 -0.5890 32 1 1.6529 -2.3441 2.1103 33 1 1.0468 -4.8284 -0.4366 34 1 0.2640 -7.1167 0.0122 35 1 -0.1786 -7.8396 2.3215 36 1 -0.2033 -7.3500 7.9942 37 1 0.9697 -3.9782 3.7535 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050595533.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:33 Heat of formation + Delta-G solvation = 35.318895 kcal Electronic energy + Delta-G solvation = -19703.259461 eV Core-core repulsion = 16639.514280 eV Total energy + Delta-G solvation = -3063.745180 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.16692 -40.73098 -38.69523 -36.11121 -34.21400 -33.72898 -31.98340 -30.45036 -29.12224 -27.23869 -27.20787 -26.00898 -23.39871 -22.24109 -21.51245 -20.33357 -19.65734 -19.06079 -18.00119 -16.90501 -16.77075 -16.43855 -16.02833 -15.69373 -15.63866 -15.35856 -15.22542 -14.50809 -14.33800 -14.12742 -14.08101 -13.50105 -13.30996 -13.19460 -13.09466 -12.91295 -12.78690 -12.48789 -12.46353 -12.17326 -12.04949 -11.30157 -10.98302 -10.62710 -9.53048 -9.10455 -9.07379 -8.45857 -8.25742 -6.14066 0.76643 0.91912 1.14370 1.33404 1.42805 1.51557 2.01601 2.07329 2.17747 2.75934 2.89120 3.26875 3.59793 3.71893 3.99210 4.17951 4.21097 4.32891 4.40510 4.41439 4.56582 4.61959 4.70908 4.71961 4.74910 4.80836 5.04634 5.13285 5.16182 5.34623 5.39551 5.45288 5.75594 5.81033 6.02212 6.05865 6.11520 6.26439 6.45871 6.57868 6.78023 6.99653 7.83095 8.77982 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017562 B = 0.004370 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.930937 B = 6405.833324 C = 7533.769265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.445 5.445 3 C -0.007 4.007 4 C -0.224 4.224 5 C -0.194 4.194 6 C -0.019 4.019 7 C 0.205 3.795 8 N -0.741 5.741 9 C 0.257 3.743 10 C -0.262 4.262 11 C -0.024 4.024 12 C -0.260 4.260 13 C 0.153 3.847 14 O -0.233 6.233 15 C -0.410 4.410 16 H 0.097 0.903 17 C -0.023 4.023 18 N -0.921 5.921 19 Si 1.017 2.983 20 H -0.255 1.255 21 H -0.266 1.266 22 H -0.268 1.268 23 C -0.316 4.316 24 H 0.070 0.930 25 H 0.108 0.892 26 H 0.086 0.914 27 H 0.191 0.809 28 H 0.148 0.852 29 H 0.136 0.864 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.395 0.605 33 H 0.144 0.856 34 H 0.154 0.846 35 H 0.107 0.893 36 H 0.272 0.728 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.146 16.385 -16.326 23.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.121 5.121 3 C -0.138 4.138 4 C -0.248 4.248 5 C -0.220 4.220 6 C -0.131 4.131 7 C 0.081 3.919 8 N -0.372 5.372 9 C 0.153 3.847 10 C -0.285 4.285 11 C -0.043 4.043 12 C -0.281 4.281 13 C 0.102 3.898 14 O -0.139 6.139 15 C -0.486 4.486 16 H 0.114 0.886 17 C -0.220 4.220 18 N -0.560 5.560 19 Si 0.837 3.163 20 H -0.179 1.179 21 H -0.191 1.191 22 H -0.193 1.193 23 C -0.340 4.340 24 H 0.089 0.911 25 H 0.127 0.873 26 H 0.105 0.895 27 H 0.208 0.792 28 H 0.166 0.834 29 H 0.154 0.846 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.229 0.771 33 H 0.162 0.838 34 H 0.172 0.828 35 H 0.125 0.875 36 H 0.081 0.919 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.627 16.083 -16.294 23.044 hybrid contribution 0.211 0.368 1.356 1.420 sum 2.838 16.451 -14.938 22.401 Atomic orbital electron populations 1.22222 0.75843 1.05669 1.03814 1.44182 1.07143 1.05457 1.55294 1.22357 0.90361 0.92410 1.08706 1.21173 0.97124 0.94859 1.11668 1.21004 0.95549 0.96029 1.09454 1.20281 0.90847 0.88600 1.13376 1.19618 1.00571 0.88318 0.83370 1.44763 1.74073 1.10406 1.07909 1.17531 0.89954 0.85243 0.91977 1.20557 1.15439 0.94618 0.97896 1.20843 0.93246 0.95656 0.94547 1.20283 1.16031 0.99725 0.92100 1.19633 0.91649 0.93025 0.85513 1.83945 1.74007 1.44029 1.11905 1.21799 1.45837 0.96090 0.84909 0.88557 1.26551 0.96468 0.99157 0.99829 1.70189 1.45507 1.20265 1.19998 0.84551 0.78448 0.77043 0.76259 1.17883 1.19137 1.19262 1.20488 1.19539 0.97602 0.96387 0.91106 0.87313 0.89523 0.79245 0.83434 0.84645 0.89838 0.90892 0.77112 0.83836 0.82837 0.87501 0.91871 0.87291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 10.92 127.77 1.39 2.26 16 2 N -0.45 -8.31 3.15 -533.26 -1.68 -9.99 16 3 C -0.01 -0.12 11.43 83.21 0.95 0.83 16 4 C -0.22 -4.47 10.86 22.14 0.24 -4.23 16 5 C -0.19 -4.41 10.77 22.14 0.24 -4.17 16 6 C -0.02 -0.43 6.26 41.08 0.26 -0.17 16 7 C 0.20 4.50 5.06 85.63 0.43 4.94 16 8 N -0.74 -21.19 5.72 -343.19 -1.96 -23.15 16 9 C 0.26 9.23 6.65 38.20 0.25 9.48 16 10 C -0.26 -8.36 9.31 22.43 0.21 -8.15 16 11 C -0.02 -0.83 10.03 22.24 0.22 -0.61 16 12 C -0.26 -11.55 9.99 22.42 0.22 -11.33 16 13 C 0.15 7.95 6.64 22.56 0.15 8.10 16 14 O -0.23 -14.50 9.76 -22.72 -0.22 -14.72 16 15 C -0.41 -24.69 9.49 67.92 0.64 -24.05 16 16 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 17 C -0.02 -1.33 5.49 84.83 0.47 -0.87 16 18 N -0.92 -57.70 13.67 21.61 0.30 -57.41 16 19 Si 1.02 44.08 29.55 68.60 2.03 46.11 16 20 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 21 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 23 C -0.32 -14.44 9.01 22.52 0.20 -14.24 16 24 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.09 1.11 7.12 -2.39 -0.02 1.09 16 27 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 28 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 29 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 30 H 0.08 1.76 7.96 -2.39 -0.02 1.74 16 31 H 0.07 1.42 7.01 -2.39 -0.02 1.41 16 32 H 0.40 11.60 8.47 -92.71 -0.79 10.82 16 33 H 0.14 3.49 6.73 -2.91 -0.02 3.47 16 34 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 35 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 36 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.11 5.18 5.64 -2.91 -0.02 5.16 16 Total: -1.00 -74.80 318.09 4.65 -70.15 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.30 Total: 31.22 kcal Atomic # 6 Polarization: -48.10 SS G_CDS: 5.89 Total: -42.21 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -3.35 Total: -90.55 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.22 Total: -14.72 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -74.80 4.65 -70.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050595533.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.465 kcal (2) G-P(sol) polarization free energy of solvation -74.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds