Wall clock time and date at job start Mon Mar 30 2020 01:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39586 * 120.10996 * 350.44659 * 3 2 1 5 5 C 1.37997 * 119.99971 * 179.97438 * 4 3 2 6 6 C 1.38244 * 120.21608 * 359.73822 * 5 4 3 7 7 C 1.38943 * 120.21200 * 0.51252 * 6 5 4 8 8 N 1.39943 * 119.99713 * 179.76584 * 7 6 5 9 9 C 1.34781 * 120.00094 * 146.37799 * 8 7 6 10 10 O 1.21285 * 119.99847 * 354.72619 * 9 8 7 11 11 C 1.50702 * 119.99871 * 174.72313 * 9 8 7 12 12 N 1.46901 * 109.46634 * 180.02562 * 11 9 8 13 13 C 1.46898 * 111.00451 * 293.95509 * 12 11 9 14 14 C 1.46904 * 110.99449 * 170.00186 * 12 11 9 15 15 C 1.50702 * 109.46776 * 189.99901 * 14 12 11 16 16 H 1.07996 * 120.00133 * 0.02562 * 15 14 12 17 17 C 1.37881 * 120.00183 * 179.97438 * 15 14 12 18 18 N 1.31517 * 119.99761 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00387 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47086 * 60.00115 * 19 17 15 21 21 H 1.48501 * 109.47297 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47153 * 300.00156 * 19 17 15 23 23 C 1.38643 * 120.00303 * 359.49290 * 7 6 5 24 24 H 4.52046 * 14.03164 * 0.02562 * 4 2 1 25 25 H 1.08001 * 120.00074 * 359.94930 * 4 3 2 26 26 H 1.08002 * 119.88828 * 179.97438 * 5 4 3 27 27 H 1.07997 * 119.88980 * 180.26174 * 6 5 4 28 28 H 0.97002 * 120.00439 * 326.38414 * 8 7 6 29 29 H 1.09003 * 109.47015 * 60.00521 * 11 9 8 30 30 H 1.08996 * 109.47287 * 300.00579 * 11 9 8 31 31 H 1.09003 * 109.46941 * 59.99778 * 13 12 11 32 32 H 1.08996 * 109.47241 * 180.02562 * 13 12 11 33 33 H 1.09006 * 109.46947 * 300.00166 * 13 12 11 34 34 H 1.08991 * 109.47292 * 310.00259 * 14 12 11 35 35 H 1.08998 * 109.47382 * 70.00548 * 14 12 11 36 36 H 0.96998 * 120.00395 * 179.97438 * 18 17 15 37 37 H 1.07996 * 120.10653 * 180.23062 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3067 -1.1898 0.2004 5 6 4.6867 -1.1867 0.1994 6 6 5.3796 -0.0080 -0.0050 7 6 4.6911 1.1829 -0.2002 8 7 5.3971 2.3743 -0.4018 9 6 4.8949 3.3262 -1.2132 10 8 3.8806 3.1129 -1.8429 11 6 5.5939 4.6554 -1.3380 12 7 4.8539 5.5116 -2.2747 13 6 4.8992 4.9638 -3.6369 14 6 5.3639 6.8890 -2.2440 15 6 4.4357 7.7856 -3.0221 16 1 3.5549 7.3737 -3.4921 17 6 4.7103 9.1322 -3.1333 18 7 5.7827 9.6341 -2.5606 19 14 3.5595 10.2438 -4.0972 20 1 2.2060 10.2030 -3.4876 21 1 4.0750 11.6362 -4.0663 22 1 3.4829 9.7760 -5.5045 23 6 3.3047 1.1901 -0.2008 24 1 -1.0500 -0.0011 -0.0003 25 1 2.7689 -2.1133 0.3566 26 1 5.2271 -2.1087 0.3551 27 1 6.4596 -0.0123 -0.0089 28 1 6.2479 2.5151 0.0424 29 1 6.6067 4.4999 -1.7098 30 1 5.6355 5.1372 -0.3611 31 1 4.4517 3.9698 -3.6438 32 1 4.3441 5.6172 -4.3100 33 1 5.9357 4.8979 -3.9678 34 1 5.4200 7.2327 -1.2112 35 1 6.3574 6.9187 -2.6913 36 1 5.9762 10.5813 -2.6390 37 1 2.7678 2.1142 -0.3561 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052130812.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:25 Heat of formation + Delta-G solvation = 58.367573 kcal Electronic energy + Delta-G solvation = -19513.103928 eV Core-core repulsion = 16450.358214 eV Total energy + Delta-G solvation = -3062.745715 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.52153 -38.69863 -36.13724 -34.94532 -33.49801 -32.52848 -30.53407 -30.01794 -27.96206 -26.88597 -24.32854 -23.67178 -22.70987 -20.82965 -19.99876 -19.23205 -17.14117 -16.81169 -16.40548 -16.12840 -15.56744 -14.95668 -14.73775 -14.52137 -14.09947 -13.89435 -13.72818 -13.43392 -13.20952 -12.44646 -12.04120 -11.88220 -11.83030 -11.55801 -11.33955 -11.08324 -10.86296 -10.74041 -10.65877 -10.53239 -10.25191 -9.99442 -9.53485 -9.15892 -8.72683 -8.44556 -8.19718 -7.29604 -6.04346 -4.05107 0.78354 1.21581 2.61437 2.66852 2.99700 3.06688 3.35136 3.38222 3.42647 3.90602 4.13347 4.42921 4.74890 4.90976 4.95043 5.00557 5.03563 5.31921 5.34788 5.39382 5.60038 5.65219 5.73013 5.95055 6.12037 6.19660 6.27478 6.33387 6.36078 6.43676 6.85345 6.91201 7.18285 7.26309 7.37459 7.43279 7.77435 8.00993 8.13853 8.30726 8.49887 9.02477 9.59067 11.06721 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027878 B = 0.003467 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.131915 B = 8073.694184 C = 8796.935214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.146 4.146 3 C 0.026 3.974 4 C -0.119 4.119 5 C -0.100 4.100 6 C -0.142 4.142 7 C 0.159 3.841 8 N -0.684 5.684 9 C 0.513 3.487 10 O -0.495 6.495 11 C 0.039 3.961 12 N -0.523 5.523 13 C 0.032 3.968 14 C 0.193 3.807 15 C -0.507 4.507 16 H 0.065 0.935 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.900 3.100 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.098 4.098 24 H 0.224 0.776 25 H 0.125 0.875 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.411 0.589 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.006 0.994 34 H 0.031 0.969 35 H -0.007 1.007 36 H 0.262 0.738 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 -20.726 7.486 22.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.146 4.146 3 C 0.025 3.975 4 C -0.137 4.137 5 C -0.119 4.119 6 C -0.163 4.163 7 C 0.065 3.935 8 N -0.331 5.331 9 C 0.301 3.699 10 O -0.366 6.366 11 C -0.093 4.093 12 N -0.248 5.248 13 C -0.116 4.116 14 C 0.069 3.931 15 C -0.545 4.545 16 H 0.083 0.917 17 C -0.146 4.146 18 N -0.540 5.540 19 Si 0.728 3.272 20 H -0.201 1.201 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.118 4.118 24 H 0.241 0.759 25 H 0.143 0.857 26 H 0.148 0.852 27 H 0.146 0.854 28 H 0.247 0.753 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.024 0.976 34 H 0.049 0.951 35 H 0.011 0.989 36 H 0.072 0.928 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.330 -20.564 7.161 21.816 hybrid contribution 0.654 0.787 -0.495 1.137 sum -0.677 -19.777 6.666 20.881 Atomic orbital electron populations 1.24871 0.95758 0.99369 0.99368 1.19993 0.92016 1.01233 1.01327 1.15784 0.86675 0.93556 1.01456 1.21114 0.94154 0.96972 1.01510 1.20814 0.93665 0.97632 0.99785 1.21014 1.00063 0.91061 1.04132 1.17614 0.91070 0.86052 0.98810 1.43771 1.24883 1.15893 1.48539 1.21318 0.85420 0.85532 0.77638 1.90682 1.23952 1.79389 1.42603 1.21954 0.95493 0.90875 1.00993 1.61883 1.53627 1.03300 1.06007 1.22380 0.98393 1.00405 0.90457 1.19793 0.94096 0.81566 0.97669 1.21114 1.08977 0.92268 1.32184 0.91712 1.24979 0.95536 0.98077 0.95994 1.69942 1.26085 1.13498 1.44509 0.86522 0.81034 0.79250 0.80404 1.20092 1.21362 1.20231 1.21281 0.92647 0.98647 0.99230 0.75889 0.85717 0.85246 0.85403 0.75335 0.92690 0.87976 0.91799 0.90589 0.97573 0.95093 0.98891 0.92847 0.84003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 19.25 29.55 0.57 -1.35 16 2 C -0.15 -1.92 13.24 -38.84 -0.51 -2.43 16 3 C 0.03 0.34 5.72 -107.03 -0.61 -0.27 16 4 C -0.12 -1.25 9.75 -39.17 -0.38 -1.63 16 5 C -0.10 -0.90 10.02 -39.67 -0.40 -1.30 16 6 C -0.14 -1.39 9.95 -39.32 -0.39 -1.78 16 7 C 0.16 2.01 6.27 -83.74 -0.53 1.48 16 8 N -0.68 -8.24 5.34 -9.89 -0.05 -8.29 16 9 C 0.51 8.27 7.29 -10.98 -0.08 8.19 16 10 O -0.49 -9.81 12.00 5.55 0.07 -9.75 16 11 C 0.04 0.66 5.45 -4.97 -0.03 0.63 16 12 N -0.52 -11.61 4.49 -245.82 -1.10 -12.71 16 13 C 0.03 0.67 9.03 60.06 0.54 1.22 16 14 C 0.19 5.00 4.72 -4.97 -0.02 4.97 16 15 C -0.51 -14.40 8.46 -34.44 -0.29 -14.69 16 16 H 0.06 1.85 7.12 -52.49 -0.37 1.48 16 17 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 19 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C -0.10 -1.42 8.35 -39.00 -0.33 -1.75 16 24 H 0.22 1.49 7.80 -54.09 -0.42 1.07 16 25 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 26 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 27 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 28 H 0.41 3.42 8.82 -40.82 -0.36 3.06 16 29 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 30 H 0.10 1.58 7.93 -51.93 -0.41 1.17 16 31 H 0.06 1.30 5.88 -51.93 -0.31 1.00 16 32 H 0.08 1.71 6.76 -51.93 -0.35 1.36 16 33 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 34 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 35 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.14 2.41 6.41 -52.49 -0.34 2.07 16 LS Contribution 324.47 15.07 4.89 4.89 Total: -1.00 -33.77 324.47 -7.68 -41.45 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -4.64 Total: 0.67 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -2.56 Total: -7.24 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.42 Total: -46.86 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.07 Total: -9.75 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.77 -7.68 -41.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052130812.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.818 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds