Wall clock time and date at job start Mon Mar 30 2020 01:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47393 * 340.23028 * 3 2 1 5 5 C 1.34777 * 120.00191 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00124 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99708 * 180.02562 * 5 4 3 8 8 H 1.09002 * 109.47116 * 299.99396 * 7 5 4 9 9 C 1.52995 * 109.47680 * 60.00050 * 7 5 4 10 10 N 1.46505 * 109.46987 * 180.02562 * 7 5 4 11 11 C 1.38853 * 120.00646 * 154.99717 * 10 7 5 12 12 C 1.39559 * 119.84677 * 179.97438 * 11 10 7 13 13 C 1.36339 * 120.16380 * 179.97438 * 12 11 10 14 14 C 1.40895 * 119.83328 * 359.97438 * 13 12 11 15 15 C 1.41142 * 120.15050 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00179 * 335.18844 * 15 14 13 17 17 C 1.39862 * 119.99548 * 155.19715 * 15 14 13 18 18 N 1.30901 * 120.00443 * 342.28826 * 17 15 14 19 19 Si 1.86803 * 119.99968 * 162.28586 * 17 15 14 20 20 H 1.48501 * 109.47245 * 94.65287 * 19 17 15 21 21 H 1.48503 * 109.47218 * 214.65385 * 19 17 15 22 22 H 1.48504 * 109.46956 * 334.65203 * 19 17 15 23 23 C 1.40886 * 119.68848 * 0.27755 * 14 13 12 24 24 C 1.36336 * 119.83300 * 359.43811 * 23 14 13 25 25 H 4.40635 * 5.51371 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.47209 * 220.23209 * 3 2 1 27 27 H 1.09002 * 109.46939 * 100.22786 * 3 2 1 28 28 H 0.96999 * 119.99863 * 359.97438 * 4 3 2 29 29 H 1.08996 * 109.47660 * 180.02562 * 9 7 5 30 30 H 1.09007 * 109.46911 * 300.00057 * 9 7 5 31 31 H 1.09002 * 109.47381 * 59.99508 * 9 7 5 32 32 H 0.97003 * 119.99738 * 334.99615 * 10 7 5 33 33 H 1.08005 * 119.91927 * 359.97438 * 12 11 10 34 34 H 1.08003 * 120.08637 * 179.97438 * 13 12 11 35 35 H 0.97003 * 120.00170 * 180.02562 * 18 17 15 36 36 H 1.07997 * 120.07487 * 179.70336 * 23 14 13 37 37 H 1.08004 * 119.91819 * 180.27851 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2989 0.4672 5 6 4.4601 -1.5299 0.5510 6 8 5.2478 -0.6620 0.2392 7 6 4.9630 -2.8669 1.0310 8 1 4.5993 -3.0502 2.0421 9 6 4.4542 -3.9680 0.0985 10 7 6.4280 -2.8658 1.0323 11 6 7.1223 -3.7196 1.8791 12 6 8.5179 -3.7161 1.8772 13 6 9.2061 -4.5513 2.7064 14 6 8.5049 -5.4189 3.5671 15 6 9.2106 -6.2859 4.4286 16 1 10.2161 -6.5925 4.1811 17 6 8.6076 -6.7481 5.6029 18 7 7.5583 -6.1325 6.0860 19 14 9.2997 -8.2440 6.4820 20 1 10.2351 -7.8031 7.5478 21 1 8.1883 -9.0199 7.0886 22 1 10.0260 -9.0983 5.5083 23 6 7.0961 -5.4207 3.5597 24 6 6.4211 -4.5759 2.7293 25 1 -1.0498 -0.0003 0.0003 26 1 3.0089 0.7854 0.6637 27 1 3.0091 0.1833 -1.0114 28 1 2.5049 -1.9929 0.7169 29 1 4.8175 -4.9351 0.4460 30 1 3.3641 -3.9687 0.0980 31 1 4.8178 -3.7848 -0.9125 32 1 6.9131 -2.2687 0.4415 33 1 9.0541 -3.0502 1.2172 34 1 10.2862 -4.5479 2.7036 35 1 7.1403 -6.4529 6.9006 36 1 6.5523 -6.0865 4.2134 37 1 5.3411 -4.5729 2.7258 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052684654.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:07 Heat of formation + Delta-G solvation = 23.615972 kcal Electronic energy + Delta-G solvation = -19510.513900 eV Core-core repulsion = 16446.261243 eV Total energy + Delta-G solvation = -3064.252657 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.18543 -39.62196 -37.00108 -36.45460 -35.00973 -33.66203 -32.07387 -31.31505 -29.77525 -28.13851 -26.43903 -24.62888 -23.13682 -22.12108 -21.14079 -19.63345 -19.14125 -18.52423 -17.50433 -17.14903 -16.77887 -16.56225 -16.08783 -15.60870 -15.20606 -14.89644 -14.52714 -14.35983 -14.25088 -14.04470 -13.78590 -13.46231 -13.24504 -13.22697 -12.71644 -12.53792 -12.52555 -12.24861 -11.81468 -11.57154 -11.49034 -11.15503 -11.08369 -10.89205 -10.36025 -10.19977 -9.38709 -8.53546 -8.18402 -5.99748 1.11484 1.19788 1.35614 1.41984 1.45389 1.54214 1.60906 1.82474 2.29143 2.36762 2.85970 2.90636 3.33391 3.65725 3.85923 4.07873 4.21133 4.47510 4.48785 4.50613 4.52639 4.71677 4.86064 4.99349 5.04563 5.13815 5.21201 5.28864 5.29579 5.46754 5.68968 5.80093 5.96693 6.20105 6.32378 6.42072 6.56624 6.67731 6.86518 7.03131 7.10256 7.11930 7.27560 8.49867 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032649 B = 0.003352 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.390983 B = 8350.587235 C = 8867.098179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.249 4.249 3 C 0.231 3.769 4 N -0.712 5.712 5 C 0.520 3.480 6 O -0.570 6.570 7 C 0.140 3.860 8 H 0.102 0.898 9 C -0.156 4.156 10 N -0.740 5.740 11 C 0.114 3.886 12 C -0.166 4.166 13 C -0.197 4.197 14 C 0.037 3.963 15 C -0.505 4.505 16 H 0.066 0.934 17 C 0.033 3.967 18 N -0.840 5.840 19 Si 0.975 3.025 20 H -0.267 1.267 21 H -0.267 1.267 22 H -0.262 1.262 23 C -0.141 4.141 24 C -0.169 4.169 25 H 0.255 0.745 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.418 0.582 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.396 0.604 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.283 0.717 36 H 0.103 0.897 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.195 6.317 -9.622 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.250 4.250 3 C 0.109 3.891 4 N -0.365 5.365 5 C 0.306 3.694 6 O -0.449 6.449 7 C 0.030 3.970 8 H 0.119 0.881 9 C -0.215 4.215 10 N -0.375 5.375 11 C 0.015 3.985 12 C -0.188 4.188 13 C -0.217 4.217 14 C 0.034 3.966 15 C -0.536 4.536 16 H 0.084 0.916 17 C -0.179 4.179 18 N -0.468 5.468 19 Si 0.797 3.203 20 H -0.192 1.192 21 H -0.191 1.191 22 H -0.186 1.186 23 C -0.161 4.161 24 C -0.191 4.191 25 H 0.271 0.729 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.255 0.745 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.231 0.769 33 H 0.128 0.872 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.121 0.879 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.955 6.909 -9.606 19.070 hybrid contribution 0.347 -0.530 0.545 0.835 sum -14.608 6.379 -9.062 18.336 Atomic orbital electron populations 1.25856 0.96668 0.95358 0.98230 1.22918 0.94383 1.04612 1.03069 1.18005 0.84082 0.85795 1.01245 1.45827 1.06394 1.16732 1.67587 1.20907 0.82406 0.89440 0.76656 1.90676 1.56339 1.47407 1.50441 1.20637 0.83086 0.91815 1.01423 0.88065 1.22209 1.02253 0.97954 0.99048 1.43709 1.03065 1.44977 1.45744 1.17376 0.90572 0.95409 0.95135 1.20074 0.92412 1.03041 1.03277 1.20735 0.97976 1.00225 1.02775 1.17836 0.92810 0.92786 0.93198 1.19579 1.01501 1.27132 1.05433 0.91576 1.26583 0.94746 0.99221 0.97342 1.69908 1.20391 1.36999 1.19479 0.85306 0.78756 0.78046 0.78203 1.19228 1.19117 1.18623 1.20875 0.94402 1.00887 0.99936 1.20282 0.98409 1.00305 1.00060 0.72915 0.89661 0.89079 0.74529 0.91888 0.88738 0.92214 0.76864 0.87187 0.88701 0.90709 0.87930 0.86604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 19.25 74.32 1.43 -0.11 16 2 C -0.25 -3.75 13.46 31.13 0.42 -3.33 16 3 C 0.23 4.05 6.15 84.57 0.52 4.57 16 4 N -0.71 -13.21 5.43 -472.13 -2.56 -15.78 16 5 C 0.52 13.59 7.22 87.66 0.63 14.22 16 6 O -0.57 -19.16 15.84 -3.03 -0.05 -19.21 16 7 C 0.14 3.82 2.67 44.24 0.12 3.94 16 8 H 0.10 2.77 6.44 -2.39 -0.02 2.75 16 9 C -0.16 -3.42 9.30 71.98 0.67 -2.75 16 10 N -0.74 -25.94 5.09 -322.09 -1.64 -27.58 16 11 C 0.11 4.88 6.65 38.67 0.26 5.13 16 12 C -0.17 -7.55 9.82 22.15 0.22 -7.33 16 13 C -0.20 -10.06 9.74 22.48 0.22 -9.84 16 14 C 0.04 2.04 5.57 -21.27 -0.12 1.92 16 15 C -0.51 -28.43 9.03 23.38 0.21 -28.22 16 16 H 0.07 3.63 7.90 -2.91 -0.02 3.61 16 17 C 0.03 1.74 5.13 85.22 0.44 2.18 16 18 N -0.84 -45.31 10.98 21.81 0.24 -45.07 16 19 Si 0.98 39.90 29.59 68.60 2.03 41.93 16 20 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 21 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 23 C -0.14 -7.44 8.63 22.47 0.19 -7.25 16 24 C -0.17 -7.60 8.75 22.15 0.19 -7.41 16 25 H 0.25 0.62 7.80 -4.43 -0.03 0.59 16 26 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.42 5.60 7.87 -92.71 -0.73 4.87 16 29 H 0.06 1.62 7.67 -2.39 -0.02 1.60 16 30 H 0.09 1.37 7.57 -2.38 -0.02 1.35 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.40 13.90 7.79 -92.71 -0.72 13.18 16 33 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 34 H 0.09 4.63 8.06 -2.91 -0.02 4.60 16 35 H 0.28 13.82 8.30 -92.71 -0.77 13.06 16 36 H 0.10 5.65 6.19 -2.91 -0.02 5.64 16 37 H 0.12 4.46 6.05 -2.91 -0.02 4.44 16 Total: -1.00 -67.83 323.74 3.07 -64.76 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: -0.35 Total: 35.22 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 5.40 Total: -34.27 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -3.96 Total: -88.42 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.05 Total: -19.21 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Total: -67.83 3.07 -64.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052684654.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.380 kcal (2) G-P(sol) polarization free energy of solvation -67.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds