Wall clock time and date at job start Mon Mar 30 2020 01:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46968 * 2 1 4 4 H 1.08992 * 109.47147 * 55.00332 * 3 2 1 5 5 C 1.50706 * 109.46970 * 175.00191 * 3 2 1 6 6 H 1.08002 * 119.99844 * 119.99736 * 5 3 2 7 7 C 1.37878 * 119.99950 * 299.99800 * 5 3 2 8 8 N 1.31516 * 119.99801 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99843 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46920 * 120.00235 * 9 7 5 12 12 H 1.48502 * 109.46771 * 240.00121 * 9 7 5 13 13 N 1.46506 * 109.47146 * 294.99815 * 3 2 1 14 14 C 1.34776 * 119.99362 * 85.00466 * 13 3 2 15 15 O 1.21641 * 120.00594 * 359.97438 * 14 13 3 16 16 C 1.47059 * 119.99315 * 180.02562 * 14 13 3 17 17 C 1.35868 * 125.42632 * 179.97438 * 16 14 13 18 18 C 1.41595 * 107.72413 * 179.97438 * 17 16 14 19 19 C 1.40101 * 133.37326 * 179.97438 * 18 17 16 20 20 C 1.36444 * 119.82855 * 179.97438 * 19 18 17 21 21 C 1.38945 * 120.61311 * 0.02626 * 20 19 18 22 22 C 1.37668 * 120.64781 * 359.97438 * 21 20 19 23 23 C 1.39230 * 119.81095 * 359.97438 * 22 21 20 24 24 N 1.37480 * 133.17861 * 179.97438 * 23 22 21 25 25 H 0.96995 * 125.60712 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47117 * 299.99882 * 1 2 3 27 27 H 1.09003 * 109.47082 * 60.00046 * 1 2 3 28 28 H 1.09001 * 109.46886 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47008 * 240.00551 * 2 1 3 30 30 H 1.08994 * 109.47257 * 120.00042 * 2 1 3 31 31 H 0.96997 * 119.99396 * 179.97438 * 8 7 5 32 32 H 0.96997 * 120.00085 * 265.00180 * 13 3 2 33 33 H 1.07999 * 126.14274 * 0.23900 * 17 16 14 34 34 H 1.07995 * 120.08798 * 0.02562 * 19 18 17 35 35 H 1.07992 * 119.69291 * 180.02562 * 20 19 18 36 36 H 1.07996 * 119.67648 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.09453 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3366 2.1728 9 14 6.0049 0.8813 1.3817 10 1 6.5986 1.5474 0.1947 11 1 6.3990 1.6168 2.6101 12 1 6.4970 -0.5175 1.4628 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3669 15 8 -0.3419 2.6319 -0.4316 16 6 0.0459 3.3214 -2.6237 17 6 -1.1482 3.9250 -2.8599 18 6 -1.1217 4.4302 -4.1824 19 6 -2.0496 5.1320 -4.9630 20 6 -1.7278 5.4933 -6.2388 21 6 -0.4864 5.1712 -6.7736 22 6 0.4422 4.4822 -6.0265 23 6 0.1377 4.1035 -4.7218 24 7 0.8368 3.4252 -3.7516 25 1 1.7369 3.0759 -3.8442 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.8294 -0.0618 2.9494 32 1 2.2719 2.1232 -1.9978 33 1 -1.9687 4.0087 -2.1626 34 1 -3.0168 5.3871 -4.5558 35 1 -2.4445 6.0345 -6.8385 36 1 -0.2478 5.4643 -7.7853 37 1 1.4042 4.2362 -6.4512 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054184439.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:18 Heat of formation + Delta-G solvation = 11.569821 kcal Electronic energy + Delta-G solvation = -20147.413363 eV Core-core repulsion = 17082.638346 eV Total energy + Delta-G solvation = -3064.775017 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.45704 -38.92260 -36.74354 -35.17748 -32.57658 -32.08151 -31.10907 -29.43771 -28.85151 -27.06085 -24.05701 -22.81771 -22.11930 -21.16869 -20.01940 -19.45888 -18.37475 -17.15144 -16.30888 -15.66113 -15.37155 -15.01942 -14.68136 -14.19676 -14.03675 -13.95138 -13.63783 -13.19289 -12.80447 -12.73499 -12.19739 -11.78943 -11.68015 -11.47487 -11.32254 -11.04194 -10.96326 -10.91345 -10.39081 -10.27082 -9.87295 -9.71320 -9.36684 -9.13183 -8.58696 -8.26077 -8.00665 -7.71354 -6.19888 -4.30062 0.85822 1.59474 2.32201 3.00084 3.18680 3.26794 3.28758 3.80279 3.87930 3.92527 4.29851 4.66324 4.94677 5.03957 5.11779 5.23090 5.31011 5.38078 5.58645 5.74869 5.97429 6.03056 6.33931 6.39658 6.40488 6.51648 6.58626 6.61042 6.72869 6.96910 7.05064 7.14148 7.23673 7.31522 7.41049 7.54229 7.64224 7.80651 8.08961 8.48420 8.66213 8.91745 9.37158 10.85449 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028838 B = 0.004174 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.703344 B = 6706.168767 C = 7385.112265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.053 0.947 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.702 5.702 14 C 0.565 3.435 15 O -0.527 6.527 16 C 0.037 3.963 17 C -0.127 4.127 18 C -0.115 4.115 19 C -0.064 4.064 20 C -0.153 4.153 21 C -0.097 4.097 22 C -0.131 4.131 23 C 0.105 3.895 24 N -0.577 5.577 25 H 0.419 0.581 26 H 0.051 0.949 27 H 0.038 0.962 28 H 0.024 0.976 29 H 0.031 0.969 30 H 0.101 0.899 31 H 0.265 0.735 32 H 0.383 0.617 33 H 0.154 0.846 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.921 6.707 -15.207 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.071 0.929 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.349 5.349 14 C 0.349 3.651 15 O -0.404 6.404 16 C -0.073 4.073 17 C -0.154 4.154 18 C -0.120 4.120 19 C -0.082 4.082 20 C -0.173 4.173 21 C -0.117 4.117 22 C -0.151 4.151 23 C -0.005 4.005 24 N -0.181 5.181 25 H 0.257 0.743 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.215 0.785 33 H 0.172 0.828 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.293 6.473 -14.231 16.853 hybrid contribution 1.822 -0.237 -0.343 1.869 sum -4.471 6.236 -14.574 16.471 Atomic orbital electron populations 1.21857 0.98223 0.98290 1.01290 1.21946 0.92726 0.99563 1.02426 1.18887 0.94446 0.89298 0.80503 0.92901 1.21227 0.90508 1.39365 1.06474 0.92099 1.24881 0.98715 0.94675 0.95308 1.69898 1.35124 1.37344 1.09319 0.86386 0.84677 0.77826 0.78165 1.19798 1.20790 1.20801 1.46487 1.14042 1.55631 1.18755 1.17200 0.83259 0.79311 0.85302 1.90822 1.51484 1.59778 1.38305 1.20767 0.92902 1.05340 0.88284 1.20872 0.97334 1.01677 0.95469 1.18246 0.94539 1.04182 0.95020 1.20393 0.98139 0.96236 0.93470 1.20583 0.97332 1.03482 0.95864 1.20804 0.93456 0.98174 0.99252 1.20060 1.00639 1.03099 0.91316 1.18353 0.92624 0.98321 0.91204 1.42054 1.16075 1.49070 1.10928 0.74337 0.92979 0.94328 0.95645 0.95010 0.88066 0.92488 0.78493 0.82831 0.85929 0.86170 0.85872 0.86179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.61 2.24 -69.08 -0.15 6.45 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -13.80 8.73 -34.44 -0.30 -14.10 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.11 11.29 55.43 0.63 -23.48 16 9 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.70 -14.14 5.02 -56.12 -0.28 -14.42 16 14 C 0.57 11.27 6.37 -12.68 -0.08 11.19 16 15 O -0.53 -12.16 13.97 5.24 0.07 -12.09 16 16 C 0.04 0.62 6.97 -82.29 -0.57 0.04 16 17 C -0.13 -1.99 10.53 -39.15 -0.41 -2.40 16 18 C -0.12 -1.62 6.16 -106.93 -0.66 -2.28 16 19 C -0.06 -0.74 10.06 -39.53 -0.40 -1.13 16 20 C -0.15 -1.53 9.97 -39.97 -0.40 -1.93 16 21 C -0.10 -0.95 10.01 -39.53 -0.40 -1.34 16 22 C -0.13 -1.43 10.08 -39.42 -0.40 -1.83 16 23 C 0.11 1.41 7.25 -83.98 -0.61 0.80 16 24 N -0.58 -7.85 6.07 -7.36 -0.04 -7.90 16 25 H 0.42 4.67 8.12 -40.82 -0.33 4.34 16 26 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 27 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 31 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.38 6.60 7.59 -40.82 -0.31 6.29 16 33 H 0.15 2.29 8.06 -52.49 -0.42 1.87 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 310.18 15.07 4.67 4.67 Total: -1.00 -29.84 310.18 -8.82 -38.67 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -4.54 Total: 10.19 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -4.30 Total: -10.79 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.30 Total: -45.80 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.07 Total: -12.09 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.84 -8.82 -38.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054184439.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.235 kcal (2) G-P(sol) polarization free energy of solvation -29.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds