Wall clock time and date at job start Mon Mar 30 2020 01:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31507 * 119.99923 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99701 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.46840 * 90.00760 * 9 7 5 11 11 H 1.48504 * 109.46912 * 209.99808 * 9 7 5 12 12 H 1.48497 * 109.47580 * 330.00471 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21615 * 120.00221 * 359.97438 * 14 13 3 16 16 C 1.47377 * 120.00134 * 179.97438 * 14 13 3 17 17 C 1.39324 * 120.34217 * 359.72980 * 16 14 13 18 18 C 1.38271 * 120.19945 * 179.71412 * 17 16 14 19 19 C 1.38068 * 120.88249 * 0.56382 * 18 17 16 20 20 C 1.38978 * 120.26632 * 359.71061 * 19 18 17 21 21 N 1.37797 * 133.37054 * 180.02562 * 20 19 18 22 22 H 0.97006 * 125.07403 * 359.95289 * 21 20 19 23 23 C 1.36549 * 109.85281 * 179.97438 * 21 20 19 24 24 C 1.34542 * 109.89725 * 0.02562 * 23 21 20 25 25 C 1.40664 * 119.52037 * 0.02562 * 20 19 18 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 0.97005 * 119.99936 * 179.97438 * 8 7 5 32 32 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 33 33 H 1.07998 * 119.89726 * 359.97438 * 17 16 14 34 34 H 1.08001 * 119.56203 * 180.27268 * 18 17 16 35 35 H 1.07994 * 119.86128 * 179.74476 * 19 18 17 36 36 H 1.07998 * 125.04941 * 179.97438 * 23 21 20 37 37 H 1.08004 * 126.49706 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4539 0.8804 1.3362 9 14 3.0964 0.1099 2.5706 10 1 2.8747 -1.3262 2.2643 11 1 3.7942 0.2357 3.8754 12 1 1.7881 0.8091 2.6394 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3418 2.6318 -0.4318 16 6 0.0454 3.3239 -2.6259 17 6 0.9318 3.3703 -3.6998 18 6 0.5608 3.9846 -4.8818 19 6 -0.6822 4.5702 -5.0163 20 6 -1.5863 4.5452 -3.9611 21 7 -2.8659 5.0303 -3.7997 22 1 -3.3693 5.5107 -4.4755 23 6 -3.3194 4.7341 -2.5462 24 6 -2.3738 4.0628 -1.8639 25 6 -1.2256 3.9193 -2.7541 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 5.8770 0.4826 2.1132 32 1 2.2718 2.1232 -1.9978 33 1 1.9100 2.9215 -3.6102 34 1 1.2545 4.0108 -5.7092 35 1 -0.9532 5.0491 -5.9456 36 1 -4.2921 5.0001 -2.1596 37 1 -2.4497 3.6992 -0.8497 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054184441.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:39 Heat of formation + Delta-G solvation = 2.614788 kcal Electronic energy + Delta-G solvation = -20580.051164 eV Core-core repulsion = 17514.887827 eV Total energy + Delta-G solvation = -3065.163337 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.20403 -40.59599 -37.69733 -37.00622 -34.39746 -33.49614 -32.61604 -30.46805 -29.85456 -29.14135 -25.21945 -24.37605 -22.81136 -22.48279 -21.53620 -21.25837 -19.64349 -18.44587 -17.55799 -17.46087 -16.95708 -16.33306 -16.15725 -15.76468 -15.37068 -15.04658 -14.95824 -14.80849 -14.07409 -13.87904 -13.75386 -13.62247 -13.51319 -12.97792 -12.78214 -12.60109 -12.50023 -12.42757 -12.29382 -11.85060 -11.37645 -11.23309 -10.85549 -10.64779 -10.60530 -9.75572 -9.19747 -8.63661 -8.37730 -6.43019 -0.23787 0.62485 1.26950 1.35004 1.45751 1.77258 2.09874 2.26423 2.26803 2.50576 2.97245 3.06661 3.79516 3.98219 4.08764 4.23235 4.25107 4.32246 4.33411 4.42848 4.50319 4.69629 4.82005 4.93619 4.96206 5.00631 5.12031 5.17481 5.25143 5.41680 5.46878 5.50561 5.51629 5.68036 5.72132 5.80387 6.14805 6.18270 6.58035 6.77926 6.92112 7.20461 7.49577 8.77510 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029472 B = 0.005007 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.815037 B = 5590.988275 C = 6182.403374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.136 4.136 3 C 0.250 3.750 4 H 0.021 0.979 5 C -0.534 4.534 6 H 0.056 0.944 7 C 0.032 3.968 8 N -0.933 5.933 9 Si 0.936 3.064 10 H -0.258 1.258 11 H -0.291 1.291 12 H -0.263 1.263 13 N -0.698 5.698 14 C 0.544 3.456 15 O -0.574 6.574 16 C -0.122 4.122 17 C -0.108 4.108 18 C -0.112 4.112 19 C -0.092 4.092 20 C 0.070 3.930 21 N -0.579 5.579 22 H 0.436 0.564 23 C 0.080 3.920 24 C -0.240 4.240 25 C -0.090 4.090 26 H 0.037 0.963 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.270 0.730 32 H 0.403 0.597 33 H 0.135 0.865 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.214 0.786 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.945 7.449 -15.201 23.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.174 4.174 3 C 0.146 3.854 4 H 0.039 0.961 5 C -0.572 4.572 6 H 0.074 0.926 7 C -0.168 4.168 8 N -0.572 5.572 9 Si 0.763 3.237 10 H -0.184 1.184 11 H -0.219 1.219 12 H -0.187 1.187 13 N -0.347 5.347 14 C 0.333 3.667 15 O -0.456 6.456 16 C -0.126 4.126 17 C -0.128 4.128 18 C -0.131 4.131 19 C -0.112 4.112 20 C -0.037 4.037 21 N -0.185 5.185 22 H 0.276 0.724 23 C -0.048 4.048 24 C -0.265 4.265 25 C -0.096 4.096 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.239 0.761 33 H 0.153 0.847 34 H 0.183 0.817 35 H 0.180 0.820 36 H 0.231 0.769 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.409 7.435 -14.500 23.845 hybrid contribution 0.348 -0.337 0.686 0.840 sum -17.061 7.098 -13.814 23.072 Atomic orbital electron populations 1.21742 0.95328 1.00434 1.01447 1.22195 0.95746 0.98432 1.01044 1.18795 0.93315 0.89641 0.83690 0.96147 1.21276 0.90198 1.38628 1.07081 0.92556 1.25517 0.95741 0.95807 0.99741 1.69971 1.10203 1.46137 1.30859 0.86045 0.79266 0.80014 0.78386 1.18359 1.21875 1.18730 1.45949 1.15558 1.56152 1.17062 1.18632 0.81676 0.78311 0.88082 1.90671 1.52229 1.61127 1.41581 1.19486 0.95286 1.03538 0.94258 1.21429 0.98881 0.99590 0.92908 1.21105 0.96597 0.97875 0.97562 1.20602 0.92265 1.00959 0.97393 1.18392 0.88004 1.01364 0.95925 1.41674 1.12053 1.50403 1.14344 0.72354 1.22422 1.00155 0.98173 0.84020 1.21930 0.94062 1.09627 1.00858 1.19334 0.94028 1.00743 0.95460 0.94400 0.92225 0.93199 0.93608 0.91345 0.92038 0.76099 0.84749 0.81690 0.82012 0.76926 0.85274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.50 8.51 71.98 0.61 -4.88 16 2 C -0.14 -6.18 5.11 30.59 0.16 -6.03 16 3 C 0.25 12.51 1.83 44.24 0.08 12.59 16 4 H 0.02 1.15 6.63 -2.38 -0.02 1.13 16 5 C -0.53 -30.12 9.31 25.60 0.24 -29.88 16 6 H 0.06 3.36 7.98 -2.91 -0.02 3.34 16 7 C 0.03 1.83 5.45 84.66 0.46 2.30 16 8 N -0.93 -56.92 13.96 21.45 0.30 -56.62 16 9 Si 0.94 46.02 24.41 68.60 1.67 47.69 16 10 H -0.26 -11.89 6.83 99.48 0.68 -11.21 16 11 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 12 H -0.26 -12.96 6.53 99.48 0.65 -12.31 16 13 N -0.70 -30.04 4.97 -449.41 -2.23 -32.28 16 14 C 0.54 23.06 6.33 86.65 0.55 23.61 16 15 O -0.57 -27.48 12.22 -4.08 -0.05 -27.53 16 16 C -0.12 -4.25 5.90 -19.95 -0.12 -4.37 16 17 C -0.11 -2.95 9.53 22.54 0.21 -2.74 16 18 C -0.11 -2.22 9.99 22.24 0.22 -2.00 16 19 C -0.09 -1.65 10.06 22.41 0.23 -1.43 16 20 C 0.07 1.63 7.27 38.98 0.28 1.91 16 21 N -0.58 -9.38 6.06 -187.64 -1.14 -10.52 16 22 H 0.44 3.21 8.96 -92.70 -0.83 2.38 16 23 C 0.08 1.51 11.82 83.11 0.98 2.49 16 24 C -0.24 -7.25 10.24 23.44 0.24 -7.01 16 25 C -0.09 -2.89 6.15 -20.01 -0.12 -3.01 16 26 H 0.04 1.66 7.84 -2.39 -0.02 1.64 16 27 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.05 2.10 5.64 -2.38 -0.01 2.09 16 29 H 0.05 2.15 3.22 -2.39 -0.01 2.14 16 30 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 31 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 32 H 0.40 15.41 6.57 -92.71 -0.61 14.80 16 33 H 0.13 3.38 6.40 -2.91 -0.02 3.36 16 34 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 36 H 0.21 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.13 4.52 7.16 -2.91 -0.02 4.50 16 Total: -1.00 -76.16 298.76 2.17 -73.99 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -0.40 Total: 23.72 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 4.03 Total: -18.46 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -3.07 Total: -99.41 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.05 Total: -27.53 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.67 Total: 47.69 kcal Total: -76.16 2.17 -73.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054184441.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.604 kcal (2) G-P(sol) polarization free energy of solvation -76.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds