Wall clock time and date at job start Mon Mar 30 2020 01:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46966 * 2 1 4 4 H 1.09006 * 109.47362 * 305.37453 * 3 2 1 5 5 C 1.50700 * 109.46868 * 185.37766 * 3 2 1 6 6 H 1.08008 * 119.99774 * 244.79726 * 5 3 2 7 7 C 1.37873 * 120.00518 * 64.79838 * 5 3 2 8 8 N 1.31517 * 119.99924 * 7.04713 * 7 5 3 9 9 Si 1.86802 * 120.00337 * 187.04424 * 7 5 3 10 10 H 1.48496 * 109.47179 * 84.99112 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99485 * 9 7 5 12 12 H 1.48499 * 109.47109 * 324.99032 * 9 7 5 13 13 N 1.46491 * 109.47239 * 65.37606 * 3 2 1 14 14 C 1.34775 * 120.00116 * 274.99976 * 13 3 2 15 15 O 1.21612 * 119.99839 * 359.97438 * 14 13 3 16 16 C 1.47378 * 120.00000 * 179.97438 * 14 13 3 17 17 C 1.39319 * 120.34513 * 359.72581 * 16 14 13 18 18 C 1.38273 * 120.19832 * 179.71765 * 17 16 14 19 19 C 1.38055 * 120.88551 * 0.55849 * 18 17 16 20 20 C 1.38987 * 120.26951 * 359.72447 * 19 18 17 21 21 N 1.37790 * 133.37350 * 180.02562 * 20 19 18 22 22 H 0.97001 * 125.07963 * 359.94046 * 21 20 19 23 23 C 1.36550 * 109.84993 * 179.97438 * 21 20 19 24 24 C 1.34545 * 109.90045 * 359.97438 * 23 21 20 25 25 C 1.40661 * 119.51486 * 359.97438 * 20 19 18 26 26 H 1.09009 * 109.47424 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47649 * 59.99584 * 1 2 3 28 28 H 1.09005 * 109.47114 * 299.99793 * 1 2 3 29 29 H 1.08991 * 109.47531 * 120.00548 * 2 1 3 30 30 H 1.09005 * 109.47114 * 240.00207 * 2 1 3 31 31 H 0.96998 * 120.00398 * 179.97438 * 8 7 5 32 32 H 0.97003 * 119.99975 * 94.99493 * 13 3 2 33 33 H 1.07997 * 119.89808 * 359.97438 * 17 16 14 34 34 H 1.08003 * 119.56012 * 180.27785 * 18 17 16 35 35 H 1.08001 * 119.87208 * 179.73698 * 19 18 17 36 36 H 1.08007 * 125.04842 * 179.97438 * 23 21 20 37 37 H 1.08002 * 126.49362 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6001 1.9834 -0.8380 5 6 3.5410 1.4445 -0.1332 6 1 4.1542 1.8170 0.6742 7 6 4.1316 0.9711 -1.2855 8 7 3.3876 0.6476 -2.3206 9 14 5.9885 0.7892 -1.3767 10 1 6.3862 -0.5218 -0.8037 11 1 6.4240 0.8624 -2.7945 12 1 6.6315 1.8824 -0.6043 13 7 1.6601 2.0947 1.2555 14 6 0.4436 2.6613 1.3795 15 8 -0.3387 2.6316 0.4488 16 6 0.0613 3.3170 2.6428 17 6 0.9497 3.3503 3.7154 18 6 0.5901 3.9713 4.8973 19 6 -0.6520 4.5566 5.0410 20 6 -1.5624 4.5348 3.9910 21 7 -2.8425 5.0211 3.8383 22 1 -3.3422 5.4991 4.5186 23 6 -3.3031 4.7292 2.5864 24 6 -2.3618 4.0594 1.8967 25 6 -1.2089 3.9123 2.7802 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 0.8898 30 1 1.8933 -0.5138 -0.8900 31 1 3.8031 0.3148 -3.1315 32 1 2.2842 2.1187 1.9977 33 1 1.9237 2.8932 3.6221 34 1 1.2886 3.9950 5.7208 35 1 -0.9173 5.0336 5.9729 36 1 -4.2782 4.9963 2.2063 37 1 -2.4440 3.6984 0.8821 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054184442.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:42 Heat of formation + Delta-G solvation = -4.901536 kcal Electronic energy + Delta-G solvation = -20485.391846 eV Core-core repulsion = 17419.902577 eV Total energy + Delta-G solvation = -3065.489269 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.18691 -40.47308 -37.64649 -36.83221 -34.28115 -33.23712 -32.49213 -30.41085 -29.81379 -28.72327 -25.36874 -24.48954 -22.67390 -22.36253 -21.47562 -21.14537 -19.52958 -18.19928 -17.51783 -17.10283 -16.93627 -16.23368 -16.08033 -15.79102 -15.30601 -14.98870 -14.79731 -14.54415 -13.88808 -13.83806 -13.51118 -13.45881 -13.25616 -12.89314 -12.63531 -12.57675 -12.45268 -12.35572 -12.15533 -12.06736 -11.61164 -11.07064 -10.63959 -10.57973 -10.48449 -9.62099 -9.18649 -8.62504 -8.16921 -6.31519 -0.21177 0.63815 1.45532 1.46935 1.56552 1.78104 2.15260 2.27122 2.38663 2.69033 3.08330 3.14970 3.85067 4.00080 4.11255 4.28049 4.34531 4.46412 4.47684 4.53683 4.70176 4.72858 4.93619 4.97082 5.07473 5.18382 5.24532 5.43089 5.47739 5.51763 5.54281 5.63091 5.72591 5.75647 5.81925 5.97102 6.09716 6.17225 6.76804 6.78875 7.04340 7.35031 7.62388 8.91583 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028174 B = 0.004713 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.570810 B = 5939.310951 C = 6538.296278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.112 4.112 3 C 0.278 3.722 4 H 0.000 1.000 5 C -0.550 4.550 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.970 3.030 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.702 5.702 14 C 0.538 3.462 15 O -0.580 6.580 16 C -0.121 4.121 17 C -0.108 4.108 18 C -0.111 4.111 19 C -0.093 4.093 20 C 0.071 3.929 21 N -0.579 5.579 22 H 0.436 0.564 23 C 0.080 3.920 24 C -0.242 4.242 25 C -0.093 4.093 26 H 0.048 0.952 27 H 0.026 0.974 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.265 0.735 32 H 0.400 0.600 33 H 0.137 0.863 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.214 0.786 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.452 8.338 18.041 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.151 4.151 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.588 4.588 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.188 1.188 13 N -0.351 5.351 14 C 0.327 3.673 15 O -0.462 6.462 16 C -0.125 4.125 17 C -0.128 4.128 18 C -0.130 4.130 19 C -0.114 4.114 20 C -0.036 4.036 21 N -0.184 5.184 22 H 0.277 0.723 23 C -0.048 4.048 24 C -0.267 4.267 25 C -0.099 4.099 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.236 0.764 33 H 0.155 0.845 34 H 0.186 0.814 35 H 0.181 0.819 36 H 0.231 0.769 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.067 8.307 17.256 21.636 hybrid contribution 0.936 -0.190 -0.508 1.082 sum -9.131 8.116 16.749 20.731 Atomic orbital electron populations 1.21665 0.96904 0.99176 1.00278 1.21693 0.93892 0.99041 1.00459 1.18381 0.93915 0.89058 0.81224 0.98183 1.21546 0.91239 1.43344 1.02647 0.91009 1.25794 1.03361 0.94618 0.94582 1.70130 1.37495 1.44032 1.03877 0.85388 0.78990 0.79050 0.77094 1.19432 1.21336 1.18821 1.46192 1.15190 1.56111 1.17591 1.18708 0.82033 0.78561 0.88034 1.90677 1.52034 1.61218 1.42269 1.19567 0.95340 1.03316 0.94295 1.21427 0.98937 0.99642 0.92806 1.21118 0.96627 0.97689 0.97520 1.20609 0.92195 1.01176 0.97401 1.18404 0.88004 1.01312 0.95870 1.41651 1.11992 1.50526 1.14258 0.72318 1.22397 1.00076 0.98243 0.84066 1.21924 0.94279 1.09653 1.00813 1.19360 0.94067 1.00967 0.95483 0.93345 0.95525 0.94018 0.93475 0.92519 0.92626 0.76396 0.84510 0.81445 0.81921 0.76933 0.85691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.52 71.98 0.61 -5.27 16 2 C -0.11 -5.73 5.49 30.59 0.17 -5.56 16 3 C 0.28 15.01 2.11 44.25 0.09 15.10 16 4 H 0.00 0.02 7.55 -2.38 -0.02 0.00 16 5 C -0.55 -30.09 8.67 25.60 0.22 -29.87 16 6 H 0.07 3.67 7.73 -2.91 -0.02 3.65 16 7 C 0.02 0.92 5.19 84.65 0.44 1.36 16 8 N -0.92 -54.36 12.00 21.45 0.26 -54.10 16 9 Si 0.97 42.91 29.54 68.60 2.03 44.94 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 13 N -0.70 -31.80 4.98 -449.44 -2.24 -34.03 16 14 C 0.54 24.50 6.35 86.65 0.55 25.05 16 15 O -0.58 -30.49 12.22 -4.07 -0.05 -30.54 16 16 C -0.12 -4.47 5.90 -19.95 -0.12 -4.58 16 17 C -0.11 -3.02 9.53 22.54 0.21 -2.80 16 18 C -0.11 -2.21 9.99 22.23 0.22 -1.99 16 19 C -0.09 -1.74 10.05 22.41 0.23 -1.52 16 20 C 0.07 1.74 7.27 38.98 0.28 2.02 16 21 N -0.58 -10.13 6.06 -187.63 -1.14 -11.27 16 22 H 0.44 3.66 8.96 -92.71 -0.83 2.83 16 23 C 0.08 1.65 11.82 83.11 0.98 2.64 16 24 C -0.24 -7.92 10.24 23.44 0.24 -7.68 16 25 C -0.09 -3.18 6.15 -20.01 -0.12 -3.30 16 26 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.03 1.36 7.87 -2.39 -0.02 1.34 16 28 H 0.04 1.98 5.64 -2.38 -0.01 1.97 16 29 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.06 3.18 6.64 -2.38 -0.02 3.17 16 31 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 32 H 0.40 15.47 6.56 -92.71 -0.61 14.86 16 33 H 0.14 3.41 6.40 -2.91 -0.02 3.39 16 34 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 35 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 36 H 0.21 2.37 8.06 -2.91 -0.02 2.35 16 37 H 0.13 4.80 7.16 -2.91 -0.02 4.78 16 Total: -1.00 -76.88 306.68 2.55 -74.33 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: -0.33 Total: 27.07 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 4.01 Total: -16.40 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -3.12 Total: -99.41 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.05 Total: -30.54 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -76.88 2.55 -74.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054184442.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.433 kcal (2) G-P(sol) polarization free energy of solvation -76.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds