Wall clock time and date at job start Mon Mar 30 2020 01:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46870 * 2 1 4 4 N 1.46504 * 109.46660 * 179.97438 * 3 2 1 5 5 C 1.46501 * 120.00084 * 71.16316 * 4 3 2 6 6 C 1.47198 * 109.46763 * 263.95497 * 5 4 3 7 7 N 3.81216 * 152.01320 * 214.02476 * 2 1 3 8 8 C 1.34774 * 119.99933 * 251.15282 * 4 3 2 9 9 O 1.21546 * 119.99926 * 183.34019 * 8 4 3 10 10 C 1.47887 * 120.00032 * 3.34176 * 8 4 3 11 11 C 1.39919 * 120.02377 * 28.94202 * 10 8 4 12 12 C 1.38337 * 120.35694 * 179.74203 * 11 10 8 13 13 C 1.37752 * 120.40934 * 0.55564 * 12 11 10 14 14 C 1.40743 * 120.04018 * 359.69794 * 13 12 11 15 15 C 1.41440 * 120.17692 * 180.02562 * 14 13 12 16 16 H 1.07992 * 120.00078 * 28.02684 * 15 14 13 17 17 C 1.39938 * 120.00106 * 208.02974 * 15 14 13 18 18 N 1.30830 * 119.99993 * 11.22793 * 17 15 14 19 19 Si 1.86796 * 120.00295 * 191.22854 * 17 15 14 20 20 H 1.48506 * 109.46925 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47408 * 119.99533 * 19 17 15 22 22 H 1.48494 * 109.47211 * 240.00053 * 19 17 15 23 23 C 1.38998 * 120.02530 * 209.21408 * 10 8 4 24 24 H 1.08996 * 109.47271 * 300.00114 * 1 2 3 25 25 H 1.08998 * 109.47085 * 59.99990 * 1 2 3 26 26 H 1.09008 * 109.46918 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47231 * 240.00312 * 2 1 3 28 28 H 1.08998 * 109.47085 * 120.00010 * 2 1 3 29 29 H 1.09003 * 109.46939 * 60.00133 * 3 2 1 30 30 H 1.08998 * 109.47275 * 299.99894 * 3 2 1 31 31 H 1.08995 * 109.47213 * 143.95610 * 5 4 3 32 32 H 1.08999 * 109.47219 * 23.94649 * 5 4 3 33 33 H 1.08002 * 119.82312 * 359.97438 * 11 10 8 34 34 H 1.08000 * 119.79175 * 180.27818 * 12 11 10 35 35 H 1.07997 * 119.97846 * 179.72231 * 13 12 11 36 36 H 0.96996 * 119.99967 * 180.02562 * 18 17 15 37 37 H 1.07990 * 120.20117 * 359.95634 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2380 1.0327 -1.1998 6 6 4.6097 -0.3871 -1.0867 7 7 4.8963 -1.4827 -1.0010 8 6 4.1784 1.8197 1.1055 9 8 5.3923 1.8780 1.0870 10 6 3.4403 2.1627 2.3402 11 6 2.2033 1.5650 2.6053 12 6 1.5095 1.8767 3.7608 13 6 2.0227 2.7873 4.6580 14 6 3.2631 3.4027 4.4058 15 6 3.7929 4.3376 5.3254 16 1 3.5381 4.2690 6.3725 17 6 4.6473 5.3517 4.8782 18 7 4.7839 5.5740 3.5962 19 14 5.5929 6.3879 6.1117 20 1 5.2651 5.9398 7.4890 21 1 7.0505 6.2331 5.8741 22 1 5.2142 7.8150 5.9527 23 6 3.9723 3.0832 3.2356 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 5.1393 1.6374 -1.2993 32 1 3.6067 1.1741 -2.0770 33 1 1.7896 0.8536 1.9059 34 1 0.5575 1.4066 3.9585 35 1 1.4730 3.0289 5.5557 36 1 5.3764 6.2767 3.2862 37 1 4.9250 3.5497 3.0332 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056485447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:11 Heat of formation + Delta-G solvation = 26.878931 kcal Electronic energy + Delta-G solvation = -20535.956342 eV Core-core repulsion = 17471.845177 eV Total energy + Delta-G solvation = -3064.111165 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.00883 -37.29904 -36.60109 -35.86361 -33.74503 -32.92301 -30.64736 -29.52079 -28.16091 -25.99118 -25.36381 -22.36878 -21.45674 -21.12715 -19.27994 -17.87871 -17.57227 -16.29134 -16.05321 -15.71972 -15.13934 -14.40311 -14.14699 -14.04125 -13.65539 -13.40779 -13.04536 -12.92194 -12.77274 -12.55903 -12.43223 -12.06070 -11.90386 -11.64003 -11.44184 -11.30344 -11.21947 -11.12135 -10.81717 -10.45252 -10.36143 -10.10551 -9.68241 -9.30953 -9.11813 -8.70968 -7.68241 -7.49946 -6.81074 -4.48043 2.10245 2.53921 2.74833 2.84792 3.05988 3.09031 3.10801 3.49724 3.61591 3.89436 4.13439 4.55332 4.90173 4.94970 5.04938 5.26409 5.35363 5.47873 5.51851 5.63002 5.71427 5.84400 6.03911 6.06160 6.10623 6.22524 6.38852 6.59592 6.69243 6.93367 6.95079 7.16359 7.31941 7.51437 7.59230 7.66574 7.77542 7.92159 8.11113 8.44977 8.65975 8.76598 8.78500 10.13178 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022301 B = 0.005407 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.271392 B = 5176.752348 C = 6021.505935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.147 4.147 3 C 0.077 3.923 4 N -0.613 5.613 5 C 0.210 3.790 6 C 0.196 3.804 7 N -0.431 5.431 8 C 0.571 3.429 9 O -0.537 6.537 10 C -0.128 4.128 11 C -0.237 4.237 12 C -0.100 4.100 13 C -0.206 4.206 14 C 0.099 3.901 15 C -0.458 4.458 16 H 0.081 0.919 17 C 0.072 3.928 18 N -0.796 5.796 19 Si 0.913 3.087 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.274 1.274 23 C -0.087 4.087 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.134 0.866 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.283 0.717 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.529 -2.945 -8.098 10.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C -0.045 4.045 4 N -0.347 5.347 5 C 0.083 3.917 6 C -0.124 4.124 7 N -0.109 5.109 8 C 0.364 3.636 9 O -0.413 6.413 10 C -0.131 4.131 11 C -0.256 4.256 12 C -0.118 4.118 13 C -0.226 4.226 14 C 0.096 3.904 15 C -0.488 4.488 16 H 0.099 0.901 17 C -0.146 4.146 18 N -0.421 5.421 19 Si 0.737 3.263 20 H -0.184 1.184 21 H -0.196 1.196 22 H -0.199 1.199 23 C -0.108 4.108 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.151 0.849 30 H 0.088 0.912 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.309 -4.344 -8.135 10.642 hybrid contribution 0.265 0.849 0.376 0.966 sum -5.044 -3.495 -7.759 9.892 Atomic orbital electron populations 1.21691 0.94847 1.01783 1.02345 1.22006 0.96558 0.97550 1.02410 1.22659 0.78493 0.97190 1.06146 1.47852 1.07091 1.67549 1.12177 1.18767 1.00068 0.82883 0.89990 1.29972 0.93117 0.95710 0.93578 1.81116 1.09135 1.13234 1.07416 1.19093 0.87007 0.74384 0.83140 1.90716 1.14087 1.52595 1.83951 1.19370 0.96404 1.02667 0.94697 1.21148 0.96975 1.07133 1.00385 1.20487 0.98366 0.98320 0.94665 1.21182 0.96948 1.03658 1.00802 1.17606 0.89911 0.90836 0.91997 1.19633 1.23968 1.09395 0.95792 0.90096 1.25931 0.95286 0.97515 0.95836 1.69746 1.30255 1.27342 1.14780 0.86179 0.79647 0.79213 0.81242 1.18409 1.19627 1.19897 1.21641 0.99885 0.95282 0.93946 0.91867 0.92581 0.92727 0.92300 0.91050 0.84859 0.91186 0.85842 0.86127 0.86180 0.88794 0.88574 0.90635 0.84872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.90 37.16 0.37 -1.04 16 2 C -0.15 -1.68 4.92 -26.73 -0.13 -1.82 16 3 C 0.08 0.97 4.86 -4.04 -0.02 0.95 16 4 N -0.61 -9.28 2.53 -178.12 -0.45 -9.73 16 5 C 0.21 2.47 5.65 -6.83 -0.04 2.43 16 6 C 0.20 2.85 14.73 -20.77 -0.31 2.54 16 7 N -0.43 -7.31 18.54 42.14 0.78 -6.53 16 8 C 0.57 11.72 7.38 -12.31 -0.09 11.63 16 9 O -0.54 -12.62 16.34 5.33 0.09 -12.53 16 10 C -0.13 -2.86 5.47 -105.04 -0.57 -3.43 16 11 C -0.24 -4.65 7.40 -38.92 -0.29 -4.93 16 12 C -0.10 -2.00 10.01 -39.72 -0.40 -2.40 16 13 C -0.21 -4.67 9.78 -38.81 -0.38 -5.05 16 14 C 0.10 2.52 5.56 -106.87 -0.59 1.92 16 15 C -0.46 -11.71 9.06 -37.73 -0.34 -12.05 16 16 H 0.08 1.98 7.87 -52.49 -0.41 1.56 16 17 C 0.07 1.76 5.25 -17.34 -0.09 1.67 16 18 N -0.80 -20.21 10.82 55.55 0.60 -19.61 16 19 Si 0.91 18.39 29.57 -169.99 -5.03 13.37 16 20 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 C -0.09 -2.23 8.21 -38.44 -0.32 -2.54 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 27 H 0.06 0.65 7.34 -51.93 -0.38 0.26 16 28 H 0.07 0.98 6.88 -51.93 -0.36 0.62 16 29 H 0.13 1.97 4.07 -51.93 -0.21 1.76 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.12 1.44 7.56 -51.93 -0.39 1.05 16 32 H 0.12 0.85 8.03 -51.93 -0.42 0.44 16 33 H 0.12 1.98 3.01 -52.49 -0.16 1.82 16 34 H 0.09 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 37 H 0.13 3.69 6.02 -52.49 -0.32 3.37 16 LS Contribution 315.05 15.07 4.75 4.75 Total: -1.00 -30.02 315.05 -6.78 -36.80 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.32 Total: 5.61 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -3.20 Total: -12.12 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.93 Total: -35.87 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.02 -6.78 -36.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.677 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds