Wall clock time and date at job start Mon Mar 30 2020 01:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46870 * 2 1 4 4 N 1.46504 * 109.46660 * 179.97438 * 3 2 1 5 5 C 1.46501 * 120.00084 * 71.16316 * 4 3 2 6 6 C 1.47198 * 109.46763 * 263.95497 * 5 4 3 7 7 N 3.81216 * 152.01320 * 214.02476 * 2 1 3 8 8 C 1.34774 * 119.99933 * 251.15282 * 4 3 2 9 9 O 1.21546 * 119.99926 * 183.34019 * 8 4 3 10 10 C 1.47887 * 120.00032 * 3.34176 * 8 4 3 11 11 C 1.39919 * 120.02377 * 28.94202 * 10 8 4 12 12 C 1.38337 * 120.35694 * 179.74203 * 11 10 8 13 13 C 1.37752 * 120.40934 * 0.55564 * 12 11 10 14 14 C 1.40743 * 120.04018 * 359.69794 * 13 12 11 15 15 C 1.41440 * 120.17692 * 180.02562 * 14 13 12 16 16 H 1.07992 * 120.00078 * 28.02684 * 15 14 13 17 17 C 1.39938 * 120.00106 * 208.02974 * 15 14 13 18 18 N 1.30830 * 119.99993 * 11.22793 * 17 15 14 19 19 Si 1.86796 * 120.00295 * 191.22854 * 17 15 14 20 20 H 1.48506 * 109.46925 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47408 * 119.99533 * 19 17 15 22 22 H 1.48494 * 109.47211 * 240.00053 * 19 17 15 23 23 C 1.38998 * 120.02530 * 209.21408 * 10 8 4 24 24 H 1.08996 * 109.47271 * 300.00114 * 1 2 3 25 25 H 1.08998 * 109.47085 * 59.99990 * 1 2 3 26 26 H 1.09008 * 109.46918 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47231 * 240.00312 * 2 1 3 28 28 H 1.08998 * 109.47085 * 120.00010 * 2 1 3 29 29 H 1.09003 * 109.46939 * 60.00133 * 3 2 1 30 30 H 1.08998 * 109.47275 * 299.99894 * 3 2 1 31 31 H 1.08995 * 109.47213 * 143.95610 * 5 4 3 32 32 H 1.08999 * 109.47219 * 23.94649 * 5 4 3 33 33 H 1.08002 * 119.82312 * 359.97438 * 11 10 8 34 34 H 1.08000 * 119.79175 * 180.27818 * 12 11 10 35 35 H 1.07997 * 119.97846 * 179.72231 * 13 12 11 36 36 H 0.96996 * 119.99967 * 180.02562 * 18 17 15 37 37 H 1.07990 * 120.20117 * 359.95634 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2380 1.0327 -1.1998 6 6 4.6097 -0.3871 -1.0867 7 7 4.8963 -1.4827 -1.0010 8 6 4.1784 1.8197 1.1055 9 8 5.3923 1.8780 1.0870 10 6 3.4403 2.1627 2.3402 11 6 2.2033 1.5650 2.6053 12 6 1.5095 1.8767 3.7608 13 6 2.0227 2.7873 4.6580 14 6 3.2631 3.4027 4.4058 15 6 3.7929 4.3376 5.3254 16 1 3.5381 4.2690 6.3725 17 6 4.6473 5.3517 4.8782 18 7 4.7839 5.5740 3.5962 19 14 5.5929 6.3879 6.1117 20 1 5.2651 5.9398 7.4890 21 1 7.0505 6.2331 5.8741 22 1 5.2142 7.8150 5.9527 23 6 3.9723 3.0832 3.2356 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 5.1393 1.6374 -1.2993 32 1 3.6067 1.1741 -2.0770 33 1 1.7896 0.8536 1.9059 34 1 0.5575 1.4066 3.9585 35 1 1.4730 3.0289 5.5557 36 1 5.3764 6.2767 3.2862 37 1 4.9250 3.5497 3.0332 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056485447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:11 Heat of formation + Delta-G solvation = 9.733482 kcal Electronic energy + Delta-G solvation = -20536.699824 eV Core-core repulsion = 17471.845177 eV Total energy + Delta-G solvation = -3064.854647 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.47113 -38.95564 -37.98770 -37.11664 -35.49646 -33.98381 -32.28285 -31.27368 -29.39105 -27.23469 -27.00815 -23.88573 -22.87928 -22.47062 -20.76951 -19.44643 -18.85192 -17.68284 -17.66016 -17.05047 -16.76122 -15.89471 -15.56860 -15.34551 -14.95332 -14.86590 -14.49252 -14.29709 -14.15783 -14.00365 -13.60639 -13.50550 -13.04712 -12.90047 -12.88188 -12.78498 -12.57026 -12.28420 -12.20562 -11.92115 -11.90818 -11.55795 -11.36900 -11.08037 -10.73850 -10.00309 -9.41644 -9.27822 -8.60716 -6.37652 0.40284 1.01419 1.31549 1.38673 1.47334 1.53206 1.71790 1.93228 2.21140 2.35570 2.76536 3.05194 3.65250 3.71351 4.00915 4.15106 4.32282 4.44797 4.47177 4.51841 4.59648 4.65389 4.84952 4.91427 5.03965 5.11312 5.19776 5.21903 5.27833 5.34228 5.50296 5.51592 5.56062 5.85618 5.95201 6.06906 6.22668 6.33169 6.46108 6.62230 6.91348 6.95532 7.12907 8.35544 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022301 B = 0.005407 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.271392 B = 5176.752348 C = 6021.505935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.072 3.928 4 N -0.600 5.600 5 C 0.206 3.794 6 C 0.215 3.785 7 N -0.477 5.477 8 C 0.565 3.435 9 O -0.579 6.579 10 C -0.139 4.139 11 C -0.211 4.211 12 C -0.099 4.099 13 C -0.211 4.211 14 C 0.066 3.934 15 C -0.498 4.498 16 H 0.080 0.920 17 C 0.030 3.970 18 N -0.832 5.832 19 Si 0.982 3.018 20 H -0.256 1.256 21 H -0.272 1.272 22 H -0.263 1.263 23 C -0.123 4.123 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.184 0.816 33 H 0.158 0.842 34 H 0.137 0.863 35 H 0.107 0.893 36 H 0.286 0.714 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.780 -3.618 -9.704 13.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C -0.049 4.049 4 N -0.332 5.332 5 C 0.081 3.919 6 C -0.104 4.104 7 N -0.156 5.156 8 C 0.357 3.643 9 O -0.459 6.459 10 C -0.142 4.142 11 C -0.230 4.230 12 C -0.117 4.117 13 C -0.231 4.231 14 C 0.064 3.936 15 C -0.528 4.528 16 H 0.098 0.902 17 C -0.184 4.184 18 N -0.459 5.459 19 Si 0.803 3.197 20 H -0.179 1.179 21 H -0.197 1.197 22 H -0.188 1.188 23 C -0.143 4.143 24 H 0.078 0.922 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.129 0.871 30 H 0.133 0.867 31 H 0.144 0.856 32 H 0.201 0.799 33 H 0.175 0.825 34 H 0.155 0.845 35 H 0.125 0.875 36 H 0.096 0.904 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.616 -5.042 -9.770 13.375 hybrid contribution 0.814 0.905 0.735 1.422 sum -6.802 -4.137 -9.036 12.042 Atomic orbital electron populations 1.21689 0.92912 1.02533 1.03261 1.21951 0.98113 0.96186 1.01755 1.22842 0.76541 0.98291 1.07232 1.47799 1.08319 1.65544 1.11523 1.19348 1.01359 0.81008 0.90220 1.30407 0.91829 0.95946 0.92204 1.81140 1.10704 1.14918 1.08842 1.18940 0.86475 0.74720 0.84169 1.90689 1.15740 1.54685 1.84799 1.19688 0.97445 1.01863 0.95241 1.21645 0.95207 1.05736 1.00376 1.20951 0.99815 0.97244 0.93719 1.21459 0.96146 1.03733 1.01767 1.17931 0.91319 0.91829 0.92498 1.19871 1.26177 1.10796 0.95924 0.90215 1.26746 0.95732 0.98395 0.97516 1.69838 1.31306 1.28277 1.16465 0.85154 0.77853 0.77840 0.78875 1.17893 1.19687 1.18752 1.21424 0.99470 0.97642 0.95801 0.92166 0.90524 0.92132 0.91170 0.93574 0.87132 0.86746 0.85582 0.79917 0.82517 0.84476 0.87500 0.90389 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.90 71.98 0.71 -1.38 16 2 C -0.14 -2.67 4.92 30.60 0.15 -2.52 16 3 C 0.07 1.51 4.86 86.38 0.42 1.93 16 4 N -0.60 -16.67 2.53 -835.74 -2.11 -18.78 16 5 C 0.21 4.16 5.65 84.57 0.48 4.64 16 6 C 0.21 5.78 14.73 89.45 1.32 7.10 16 7 N -0.48 -15.62 18.54 20.00 0.37 -15.25 16 8 C 0.57 23.18 7.38 86.80 0.64 23.82 16 9 O -0.58 -28.03 16.34 -3.86 -0.06 -28.10 16 10 C -0.14 -6.28 5.47 -20.13 -0.11 -6.39 16 11 C -0.21 -7.90 7.40 22.70 0.17 -7.73 16 12 C -0.10 -3.76 10.01 22.18 0.22 -3.54 16 13 C -0.21 -9.57 9.78 22.77 0.22 -9.35 16 14 C 0.07 3.52 5.56 -21.32 -0.12 3.40 16 15 C -0.50 -26.71 9.06 23.47 0.21 -26.49 16 16 H 0.08 4.09 7.87 -2.91 -0.02 4.06 16 17 C 0.03 1.52 5.25 85.25 0.45 1.97 16 18 N -0.83 -44.68 10.82 21.83 0.24 -44.44 16 19 Si 0.98 39.11 29.57 68.60 2.03 41.14 16 20 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 21 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 22 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 23 C -0.12 -6.59 8.21 23.01 0.19 -6.40 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.07 1.21 7.34 -2.39 -0.02 1.19 16 28 H 0.05 1.11 6.88 -2.39 -0.02 1.10 16 29 H 0.11 2.89 4.07 -2.39 -0.01 2.88 16 30 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.13 2.65 7.56 -2.39 -0.02 2.63 16 32 H 0.18 1.48 8.03 -2.39 -0.02 1.46 16 33 H 0.16 4.67 3.01 -2.91 -0.01 4.67 16 34 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 35 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 36 H 0.29 14.02 8.30 -92.71 -0.77 13.26 16 37 H 0.10 5.93 6.02 -2.92 -0.02 5.91 16 Total: -1.00 -71.57 315.05 6.51 -65.06 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 1.10 Total: 21.31 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 4.95 Total: -20.94 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -1.51 Total: -78.47 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.06 Total: -28.10 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -71.57 6.51 -65.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.791 kcal (2) G-P(sol) polarization free energy of solvation -71.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds