Wall clock time and date at job start Mon Mar 30 2020 01:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46980 * 2 1 4 4 C 1.52998 * 109.47152 * 119.99612 * 2 1 3 5 5 C 1.50702 * 109.47352 * 295.00095 * 4 2 1 6 6 O 1.21295 * 119.99726 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00093 * 179.97438 * 5 4 2 8 8 C 1.37099 * 120.00109 * 180.02562 * 7 5 4 9 9 H 1.08005 * 119.99561 * 20.21554 * 8 7 5 10 10 C 1.38952 * 120.00366 * 200.21826 * 8 7 5 11 11 N 1.31418 * 119.99799 * 21.43369 * 10 8 7 12 12 Si 1.86796 * 120.00096 * 201.43658 * 10 8 7 13 13 H 1.48499 * 109.47308 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.47057 * 120.00085 * 12 10 8 15 15 H 1.48497 * 109.46981 * 239.99720 * 12 10 8 16 16 C 1.46501 * 120.00010 * 0.02562 * 7 5 4 17 17 C 1.47200 * 109.47095 * 83.95211 * 16 7 5 18 18 N 5.28507 * 135.32396 * 107.82269 * 2 1 3 19 19 C 1.50697 * 109.46990 * 239.99977 * 2 1 3 20 20 C 1.38239 * 119.99900 * 299.72199 * 19 2 1 21 21 C 1.38231 * 119.99802 * 179.81395 * 20 19 2 22 22 C 1.38232 * 120.00253 * 0.39601 * 21 20 19 23 23 C 1.38238 * 119.99902 * 359.86265 * 22 21 20 24 24 C 1.38232 * 119.99981 * 359.94996 * 23 22 21 25 25 H 1.08995 * 109.46999 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47100 * 300.00054 * 1 2 3 27 27 H 1.09000 * 109.46932 * 59.99812 * 1 2 3 28 28 H 1.08998 * 109.46818 * 54.99670 * 4 2 1 29 29 H 1.08998 * 109.47171 * 175.00138 * 4 2 1 30 30 H 0.96996 * 119.99871 * 180.02562 * 11 10 8 31 31 H 1.08999 * 109.47092 * 203.94726 * 16 7 5 32 32 H 1.09003 * 109.46947 * 323.94700 * 16 7 5 33 33 H 1.08007 * 119.99841 * 0.02562 * 20 19 2 34 34 H 1.08005 * 119.99888 * 180.23508 * 21 20 19 35 35 H 1.07996 * 120.00435 * 179.83579 * 22 21 20 36 36 H 1.07997 * 120.00007 * 179.97438 * 23 22 21 37 37 H 1.08001 * 120.00178 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 0.0572 2.4766 6 8 1.0117 1.0877 2.3632 7 7 1.9845 -0.3917 3.7002 8 6 1.6214 0.3161 4.8167 9 1 0.8099 1.0270 4.7652 10 6 2.2973 0.1190 6.0147 11 7 3.5078 -0.3926 6.0096 12 14 1.4854 0.5812 7.6322 13 1 0.1327 1.1335 7.3671 14 1 1.3686 -0.6255 8.4900 15 1 2.3098 1.6033 8.3256 16 6 2.7456 -1.6360 3.8371 17 6 4.1806 -1.3546 3.6687 18 7 5.2883 -1.1373 3.5376 19 6 2.0324 -0.7104 -1.2304 20 6 1.7031 -2.0356 -1.4463 21 6 2.1607 -2.6861 -2.5769 22 6 2.9542 -2.0139 -3.4875 23 6 3.2879 -0.6903 -3.2690 24 6 2.8271 -0.0387 -2.1404 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6054 -1.7197 1.2952 29 1 3.1264 -0.7994 1.2056 30 1 3.9795 -0.5306 6.8458 31 1 2.5723 -2.0610 4.8258 32 1 2.4224 -2.3453 3.0750 33 1 1.0855 -2.5616 -0.7332 34 1 1.9003 -3.7203 -2.7474 35 1 3.3139 -2.5229 -4.3695 36 1 3.9082 -0.1653 -3.9803 37 1 3.0875 0.9955 -1.9698 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059014362.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:32 Heat of formation + Delta-G solvation = 0.786957 kcal Electronic energy + Delta-G solvation = -20379.825841 eV Core-core repulsion = 17314.583243 eV Total energy + Delta-G solvation = -3065.242598 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.98101 -39.96551 -37.67755 -36.34165 -35.61122 -33.73952 -31.71918 -30.69203 -29.28425 -28.77328 -26.34903 -24.35840 -23.33940 -21.58322 -20.27523 -19.66918 -18.31724 -18.04502 -17.36265 -16.66335 -16.21638 -15.88586 -15.81335 -15.52200 -14.80905 -14.69169 -14.46687 -14.27147 -14.06386 -13.84741 -13.61002 -13.39460 -13.22056 -13.04787 -12.91033 -12.69089 -12.34102 -12.21636 -12.09693 -12.01930 -12.00653 -11.62579 -11.44459 -11.08171 -10.29620 -9.85550 -9.73408 -9.52281 -8.38542 -5.95124 0.53337 0.58618 1.39140 1.48890 1.61225 1.84467 2.09540 2.26836 2.37324 2.94796 3.02070 3.15775 3.60961 3.79749 3.87973 4.17311 4.21561 4.24210 4.31041 4.39151 4.48511 4.66494 4.71144 4.73245 4.79002 4.87647 4.94547 5.10870 5.20491 5.24925 5.32637 5.49378 5.52592 5.68523 5.70490 5.85350 6.08840 6.21359 6.43291 7.02400 7.16116 7.39221 7.97664 8.65788 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028471 B = 0.004709 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.214179 B = 5944.370047 C = 6481.460440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.029 4.029 3 H 0.054 0.946 4 C -0.116 4.116 5 C 0.453 3.547 6 O -0.606 6.606 7 N -0.459 5.459 8 C -0.338 4.338 9 H 0.082 0.918 10 C 0.004 3.996 11 N -0.895 5.895 12 Si 0.985 3.015 13 H -0.270 1.270 14 H -0.263 1.263 15 H -0.291 1.291 16 C 0.223 3.777 17 C 0.257 3.743 18 N -0.510 5.510 19 C -0.082 4.082 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.133 4.133 23 C -0.127 4.127 24 C -0.139 4.139 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.273 0.727 31 H 0.121 0.879 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.251 -8.879 -13.543 16.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.048 4.048 3 H 0.073 0.927 4 C -0.156 4.156 5 C 0.244 3.756 6 O -0.491 6.491 7 N -0.179 5.179 8 C -0.465 4.465 9 H 0.100 0.900 10 C -0.198 4.198 11 N -0.534 5.534 12 Si 0.809 3.191 13 H -0.194 1.194 14 H -0.188 1.188 15 H -0.218 1.218 16 C 0.096 3.904 17 C -0.060 4.060 18 N -0.191 5.191 19 C -0.082 4.082 20 C -0.139 4.139 21 C -0.139 4.139 22 C -0.150 4.150 23 C -0.145 4.145 24 C -0.157 4.157 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.136 0.864 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.139 0.861 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.164 0.836 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.801 -8.102 -13.632 16.104 hybrid contribution -0.242 0.804 1.321 1.566 sum -3.043 -7.298 -12.311 14.631 Atomic orbital electron populations 1.21830 0.93412 1.02372 1.01834 1.19730 0.96962 0.97781 0.90319 0.92745 1.21657 1.01711 1.00813 0.91374 1.21025 0.83252 0.86421 0.84927 1.90485 1.44918 1.27263 1.86444 1.43833 1.47921 1.20869 1.05282 1.19630 1.16163 1.23663 0.87090 0.89998 1.25894 0.94535 0.97094 1.02267 1.69939 1.09749 1.45002 1.28685 0.85003 0.78237 0.78096 0.77729 1.19434 1.18790 1.21796 1.19033 0.77885 0.87432 1.06067 1.29826 0.95564 0.91555 0.89069 1.80905 1.14866 1.09429 1.13891 1.19917 0.97691 0.95072 0.95529 1.21251 1.00459 0.93686 0.98544 1.21475 0.97521 1.00956 0.93953 1.21473 0.98622 0.94614 1.00323 1.21379 1.00110 0.95682 0.97293 1.21270 0.98720 1.00288 0.95442 0.91202 0.92807 0.92731 0.86358 0.90660 0.91733 0.86102 0.84345 0.84504 0.83599 0.83878 0.84584 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 8.75 71.98 0.63 -3.44 16 2 C -0.03 -0.90 2.21 -11.54 -0.03 -0.93 16 3 H 0.05 1.97 7.69 -2.38 -0.02 1.96 16 4 C -0.12 -3.78 3.52 29.85 0.10 -3.67 16 5 C 0.45 19.91 7.28 87.66 0.64 20.55 16 6 O -0.61 -31.14 13.64 -3.08 -0.04 -31.18 16 7 N -0.46 -20.92 2.60 -645.41 -1.68 -22.59 16 8 C -0.34 -17.43 9.27 84.04 0.78 -16.65 16 9 H 0.08 4.57 7.43 -2.91 -0.02 4.54 16 10 C 0.00 0.19 4.84 84.93 0.41 0.61 16 11 N -0.89 -45.07 9.58 21.66 0.21 -44.86 16 12 Si 0.98 40.05 29.60 68.60 2.03 42.09 16 13 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 14 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 15 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 16 C 0.22 8.34 4.91 84.57 0.42 8.76 16 17 C 0.26 11.15 12.82 89.44 1.15 12.30 16 18 N -0.51 -24.26 18.54 20.01 0.37 -23.89 16 19 C -0.08 -2.17 4.78 -19.87 -0.09 -2.26 16 20 C -0.12 -2.65 8.76 22.27 0.20 -2.45 16 21 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 22 C -0.13 -2.44 10.05 22.27 0.22 -2.21 16 23 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 24 C -0.14 -3.57 9.67 22.27 0.22 -3.35 16 25 H 0.07 1.71 7.40 -2.39 -0.02 1.69 16 26 H 0.05 1.96 5.95 -2.39 -0.01 1.94 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.12 2.96 6.83 -2.39 -0.02 2.95 16 29 H 0.07 2.55 7.49 -2.39 -0.02 2.53 16 30 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 31 H 0.12 4.64 6.63 -2.39 -0.02 4.62 16 32 H 0.14 3.61 6.69 -2.39 -0.02 3.59 16 33 H 0.14 2.49 7.17 -2.91 -0.02 2.47 16 34 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 36 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 37 H 0.11 2.93 7.95 -2.91 -0.02 2.91 16 Total: -1.00 -66.76 314.09 7.06 -59.70 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 1.08 Total: 17.97 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 5.09 Total: 2.77 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -1.10 Total: -91.35 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.04 Total: -31.18 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.09 kcal Total: -66.76 7.06 -59.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059014362.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.486 kcal (2) G-P(sol) polarization free energy of solvation -66.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds