Wall clock time and date at job start Mon Mar 30 2020 01:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47325 * 2 1 4 4 C 1.53002 * 109.47168 * 240.00015 * 2 1 3 5 5 C 1.50701 * 109.47144 * 65.00356 * 4 2 1 6 6 O 1.21292 * 120.00222 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99845 * 180.02562 * 5 4 2 8 8 C 1.37104 * 120.00059 * 179.97438 * 7 5 4 9 9 H 1.07998 * 119.99507 * 17.71940 * 8 7 5 10 10 C 1.38944 * 120.00004 * 197.71373 * 8 7 5 11 11 N 1.31408 * 120.00139 * 21.40118 * 10 8 7 12 12 Si 1.86805 * 120.00061 * 201.39562 * 10 8 7 13 13 H 1.48504 * 109.46670 * 90.00300 * 12 10 8 14 14 H 1.48496 * 109.47112 * 210.00345 * 12 10 8 15 15 H 1.48495 * 109.47077 * 330.00760 * 12 10 8 16 16 C 1.46496 * 120.00196 * 359.97438 * 7 5 4 17 17 C 1.47204 * 109.46962 * 84.23770 * 16 7 5 18 18 N 5.29331 * 85.43327 * 225.99853 * 2 1 3 19 19 C 1.50698 * 109.47250 * 119.99971 * 2 1 3 20 20 C 1.38232 * 119.99799 * 59.72447 * 19 2 1 21 21 C 1.38241 * 119.99918 * 179.79161 * 20 19 2 22 22 C 1.38237 * 119.99815 * 0.44021 * 21 20 19 23 23 C 1.38238 * 119.99906 * 359.81615 * 22 21 20 24 24 C 1.38228 * 120.00146 * 359.97435 * 23 22 21 25 25 H 1.09007 * 109.46850 * 60.00155 * 1 2 3 26 26 H 1.08993 * 109.46904 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46657 * 300.00183 * 1 2 3 28 28 H 1.09000 * 109.46902 * 184.99919 * 4 2 1 29 29 H 1.08993 * 109.47126 * 304.99763 * 4 2 1 30 30 H 0.96999 * 120.00073 * 179.97438 * 11 10 8 31 31 H 1.08997 * 109.47544 * 204.23576 * 16 7 5 32 32 H 1.09005 * 109.47201 * 324.23927 * 16 7 5 33 33 H 1.08000 * 120.00283 * 0.02562 * 20 19 2 34 34 H 1.07991 * 120.00124 * 180.27820 * 21 20 19 35 35 H 1.08000 * 120.00034 * 179.83292 * 22 21 20 36 36 H 1.08007 * 120.00078 * 179.97438 * 23 22 21 37 37 H 1.07999 * 120.00134 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0571 -2.4766 6 8 1.0110 1.0871 -2.3634 7 7 1.9846 -0.3919 -3.7001 8 6 1.6215 0.3159 -4.8168 9 1 1.3236 1.3501 -4.7273 10 6 1.6370 -0.2973 -6.0635 11 7 1.5806 -1.6072 -6.1522 12 14 1.7377 0.7403 -7.6136 13 1 3.1623 0.9518 -7.9759 14 1 1.0433 0.0402 -8.7239 15 1 1.0879 2.0537 -7.3732 16 6 2.7455 -1.6362 -3.8370 17 6 1.8213 -2.7817 -3.8132 18 7 1.1086 -3.6655 -3.7955 19 6 2.0324 -0.7104 1.2304 20 6 1.6937 -2.0321 1.4520 21 6 2.1581 -2.6851 2.5786 22 6 2.9536 -2.0135 3.4880 23 6 3.2878 -0.6902 3.2691 24 6 2.8271 -0.0386 2.1404 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.1264 -0.7994 -1.2056 29 1 1.6055 -1.7198 -1.2951 30 1 1.5910 -2.0352 -7.0226 31 1 3.2892 -1.6277 -4.7817 32 1 3.4524 -1.7225 -3.0117 33 1 1.0695 -2.5558 0.7432 34 1 1.8972 -3.7190 2.7494 35 1 3.3142 -2.5229 4.3695 36 1 3.9090 -0.1653 3.9798 37 1 3.0886 0.9952 1.9691 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059014363.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:36 Heat of formation + Delta-G solvation = 17.226013 kcal Electronic energy + Delta-G solvation = -20399.149576 eV Core-core repulsion = 17334.619830 eV Total energy + Delta-G solvation = -3064.529747 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.64094 -38.65921 -35.98683 -34.80447 -34.07683 -31.87796 -30.83920 -29.59995 -27.73670 -27.23902 -24.62831 -23.23178 -22.41166 -20.30193 -18.74776 -17.89195 -17.00287 -16.38698 -16.11638 -15.26959 -14.87976 -14.59545 -14.19846 -14.14053 -13.49601 -13.28956 -13.17223 -12.96930 -12.83968 -12.36558 -12.12397 -12.00508 -11.69060 -11.47452 -11.21905 -11.17725 -11.11467 -10.85682 -10.56346 -10.51534 -10.39742 -10.31761 -10.26007 -9.24806 -8.85046 -8.63346 -8.45776 -8.03588 -6.50298 -3.99560 1.44600 1.47117 3.10102 3.22277 3.26275 3.56122 3.79648 3.87762 3.98590 4.12172 4.68477 4.88134 4.92704 5.00970 5.08229 5.18304 5.24892 5.35648 5.49498 5.58273 5.64363 5.69269 5.84314 6.03005 6.08274 6.10718 6.15270 6.22981 6.37778 6.48246 6.51105 6.55628 6.56875 6.83017 6.90812 7.09475 7.47413 7.91552 8.28924 8.73928 9.01346 9.20788 9.75574 10.55915 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028923 B = 0.004685 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.848403 B = 5974.807411 C = 6476.503428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.033 4.033 3 H 0.085 0.915 4 C -0.128 4.128 5 C 0.458 3.542 6 O -0.570 6.570 7 N -0.445 5.445 8 C -0.313 4.313 9 H 0.109 0.891 10 C 0.031 3.969 11 N -0.878 5.878 12 Si 0.926 3.074 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.269 1.269 16 C 0.221 3.779 17 C 0.247 3.753 18 N -0.474 5.474 19 C -0.066 4.066 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.132 4.132 23 C -0.122 4.122 24 C -0.118 4.118 25 H 0.086 0.914 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.273 0.727 31 H 0.127 0.873 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.112 -0.403 13.035 14.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.052 4.052 3 H 0.103 0.897 4 C -0.169 4.169 5 C 0.247 3.753 6 O -0.453 6.453 7 N -0.165 5.165 8 C -0.440 4.440 9 H 0.126 0.874 10 C -0.172 4.172 11 N -0.517 5.517 12 Si 0.753 3.247 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.194 1.194 16 C 0.093 3.907 17 C -0.072 4.072 18 N -0.154 5.154 19 C -0.066 4.066 20 C -0.132 4.132 21 C -0.138 4.138 22 C -0.150 4.150 23 C -0.140 4.140 24 C -0.136 4.136 25 H 0.104 0.896 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.144 0.856 32 H 0.101 0.899 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.734 -1.314 12.937 13.838 hybrid contribution 0.305 0.450 -0.999 1.137 sum 5.038 -0.864 11.938 12.986 Atomic orbital electron populations 1.21937 0.93911 1.01411 1.03056 1.19861 0.96678 0.99023 0.89632 0.89662 1.21694 1.01758 0.99882 0.93529 1.20112 0.83248 0.87841 0.84117 1.90502 1.42819 1.26036 1.85906 1.43663 1.47875 1.19412 1.05575 1.19727 1.44999 0.96227 0.83086 0.87375 1.25265 0.96614 0.95730 0.99598 1.69860 1.47379 1.08460 1.26013 0.85912 0.78453 0.79880 0.80449 1.20174 1.21156 1.19355 1.18735 0.89479 0.78357 1.04129 1.29299 0.94184 0.93497 0.90172 1.80871 1.09093 1.13194 1.12219 1.20088 0.96301 0.94126 0.96131 1.21091 1.00006 0.94546 0.97569 1.21128 0.98204 0.99728 0.94742 1.21077 0.99465 0.94994 0.99494 1.21100 1.00261 0.94960 0.97637 1.21115 0.98121 0.99981 0.94404 0.89573 0.93594 0.93499 0.90034 0.90308 0.91665 0.85570 0.89876 0.86087 0.86387 0.86574 0.86417 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.74 37.16 0.32 -2.08 16 2 C -0.03 -0.52 2.21 -91.77 -0.20 -0.72 16 3 H 0.09 1.38 7.69 -51.93 -0.40 0.98 16 4 C -0.13 -2.17 3.52 -27.88 -0.10 -2.27 16 5 C 0.46 9.99 7.28 -10.99 -0.08 9.91 16 6 O -0.57 -14.10 13.62 5.55 0.08 -14.03 16 7 N -0.44 -10.17 2.60 -117.94 -0.31 -10.48 16 8 C -0.31 -7.95 9.32 -14.93 -0.14 -8.09 16 9 H 0.11 2.90 7.39 -52.49 -0.39 2.52 16 10 C 0.03 0.77 4.87 -17.47 -0.09 0.68 16 11 N -0.88 -22.04 9.48 55.50 0.53 -21.52 16 12 Si 0.93 19.52 29.60 -169.99 -5.03 14.49 16 13 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 14 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 15 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 16 C 0.22 4.32 4.91 -6.83 -0.03 4.29 16 17 C 0.25 5.40 12.95 -20.77 -0.27 5.13 16 18 N -0.47 -11.16 18.53 42.13 0.78 -10.38 16 19 C -0.07 -0.91 4.78 -104.62 -0.50 -1.41 16 20 C -0.11 -1.51 8.76 -39.58 -0.35 -1.86 16 21 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 22 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 23 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 24 C -0.12 -1.46 9.67 -39.58 -0.38 -1.84 16 25 H 0.09 1.68 5.95 -51.93 -0.31 1.38 16 26 H 0.04 0.72 7.37 -51.93 -0.38 0.34 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.20 7.42 -51.93 -0.39 0.81 16 29 H 0.08 1.34 6.95 -51.93 -0.36 0.98 16 30 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.13 2.54 6.46 -51.93 -0.34 2.20 16 32 H 0.08 1.25 6.68 -51.93 -0.35 0.91 16 33 H 0.12 1.60 7.16 -52.49 -0.38 1.23 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.12 1.34 7.95 -52.49 -0.42 0.92 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -29.62 313.96 -6.76 -36.38 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -4.53 Total: 4.40 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -3.01 Total: -3.59 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 1.00 Total: -42.37 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.08 Total: -14.03 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.62 -6.76 -36.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059014363.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.605 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds