Wall clock time and date at job start Mon Mar 30 2020 01:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47325 * 2 1 4 4 C 1.53002 * 109.47168 * 240.00015 * 2 1 3 5 5 C 1.50701 * 109.47144 * 65.00356 * 4 2 1 6 6 O 1.21292 * 120.00222 * 359.97438 * 5 4 2 7 7 N 1.34773 * 119.99845 * 180.02562 * 5 4 2 8 8 C 1.37104 * 120.00059 * 179.97438 * 7 5 4 9 9 H 1.07998 * 119.99507 * 17.71940 * 8 7 5 10 10 C 1.38944 * 120.00004 * 197.71373 * 8 7 5 11 11 N 1.31408 * 120.00139 * 21.40118 * 10 8 7 12 12 Si 1.86805 * 120.00061 * 201.39562 * 10 8 7 13 13 H 1.48504 * 109.46670 * 90.00300 * 12 10 8 14 14 H 1.48496 * 109.47112 * 210.00345 * 12 10 8 15 15 H 1.48495 * 109.47077 * 330.00760 * 12 10 8 16 16 C 1.46496 * 120.00196 * 359.97438 * 7 5 4 17 17 C 1.47204 * 109.46962 * 84.23770 * 16 7 5 18 18 N 5.29331 * 85.43327 * 225.99853 * 2 1 3 19 19 C 1.50698 * 109.47250 * 119.99971 * 2 1 3 20 20 C 1.38232 * 119.99799 * 59.72447 * 19 2 1 21 21 C 1.38241 * 119.99918 * 179.79161 * 20 19 2 22 22 C 1.38237 * 119.99815 * 0.44021 * 21 20 19 23 23 C 1.38238 * 119.99906 * 359.81615 * 22 21 20 24 24 C 1.38228 * 120.00146 * 359.97435 * 23 22 21 25 25 H 1.09007 * 109.46850 * 60.00155 * 1 2 3 26 26 H 1.08993 * 109.46904 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46657 * 300.00183 * 1 2 3 28 28 H 1.09000 * 109.46902 * 184.99919 * 4 2 1 29 29 H 1.08993 * 109.47126 * 304.99763 * 4 2 1 30 30 H 0.96999 * 120.00073 * 179.97438 * 11 10 8 31 31 H 1.08997 * 109.47544 * 204.23576 * 16 7 5 32 32 H 1.09005 * 109.47201 * 324.23927 * 16 7 5 33 33 H 1.08000 * 120.00283 * 0.02562 * 20 19 2 34 34 H 1.07991 * 120.00124 * 180.27820 * 21 20 19 35 35 H 1.08000 * 120.00034 * 179.83292 * 22 21 20 36 36 H 1.08007 * 120.00078 * 179.97438 * 23 22 21 37 37 H 1.07999 * 120.00134 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0571 -2.4766 6 8 1.0110 1.0871 -2.3634 7 7 1.9846 -0.3919 -3.7001 8 6 1.6215 0.3159 -4.8168 9 1 1.3236 1.3501 -4.7273 10 6 1.6370 -0.2973 -6.0635 11 7 1.5806 -1.6072 -6.1522 12 14 1.7377 0.7403 -7.6136 13 1 3.1623 0.9518 -7.9759 14 1 1.0433 0.0402 -8.7239 15 1 1.0879 2.0537 -7.3732 16 6 2.7455 -1.6362 -3.8370 17 6 1.8213 -2.7817 -3.8132 18 7 1.1086 -3.6655 -3.7955 19 6 2.0324 -0.7104 1.2304 20 6 1.6937 -2.0321 1.4520 21 6 2.1581 -2.6851 2.5786 22 6 2.9536 -2.0135 3.4880 23 6 3.2878 -0.6902 3.2691 24 6 2.8271 -0.0386 2.1404 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.1264 -0.7994 -1.2056 29 1 1.6055 -1.7198 -1.2951 30 1 1.5910 -2.0352 -7.0226 31 1 3.2892 -1.6277 -4.7817 32 1 3.4524 -1.7225 -3.0117 33 1 1.0695 -2.5558 0.7432 34 1 1.8972 -3.7190 2.7494 35 1 3.3142 -2.5229 4.3695 36 1 3.9090 -0.1653 3.9798 37 1 3.0886 0.9952 1.9691 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059014363.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:35 Heat of formation + Delta-G solvation = 2.103747 kcal Electronic energy + Delta-G solvation = -20399.805327 eV Core-core repulsion = 17334.619830 eV Total energy + Delta-G solvation = -3065.185497 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.98642 -39.97240 -37.69290 -36.36786 -35.61844 -33.73687 -31.71954 -30.69729 -29.31405 -28.79782 -26.35928 -24.37837 -23.33113 -21.58656 -20.24990 -19.69515 -18.35846 -18.00902 -17.39231 -16.60016 -16.28821 -15.93463 -15.75191 -15.46950 -14.79576 -14.69374 -14.49424 -14.40725 -14.06884 -13.76106 -13.64197 -13.46427 -13.21650 -13.08912 -12.88744 -12.65346 -12.32558 -12.29691 -12.15007 -12.10268 -11.87902 -11.65641 -11.49848 -11.07230 -10.27689 -9.89188 -9.73540 -9.52675 -8.38624 -5.93991 0.53074 0.58471 1.40818 1.48716 1.58638 1.84157 2.08814 2.26464 2.36831 2.94527 3.01732 3.15578 3.60333 3.80311 3.86561 4.14473 4.22203 4.25800 4.28904 4.38589 4.49920 4.63005 4.70131 4.71892 4.73564 4.90120 4.93516 5.05469 5.20273 5.21970 5.31084 5.42606 5.51145 5.68518 5.70591 5.85604 6.07127 6.20884 6.42961 7.00888 7.15620 7.39225 7.97243 8.65240 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028923 B = 0.004685 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.848403 B = 5974.807411 C = 6476.503428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.026 4.026 3 H 0.076 0.924 4 C -0.117 4.117 5 C 0.452 3.548 6 O -0.606 6.606 7 N -0.459 5.459 8 C -0.339 4.339 9 H 0.083 0.917 10 C 0.004 3.996 11 N -0.895 5.895 12 Si 0.985 3.015 13 H -0.260 1.260 14 H -0.288 1.288 15 H -0.278 1.278 16 C 0.221 3.779 17 C 0.258 3.742 18 N -0.508 5.508 19 C -0.080 4.080 20 C -0.129 4.129 21 C -0.125 4.125 22 C -0.129 4.129 23 C -0.121 4.121 24 C -0.127 4.127 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.273 0.727 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.113 0.887 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.878 -0.965 14.606 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.045 4.045 3 H 0.094 0.906 4 C -0.157 4.157 5 C 0.243 3.757 6 O -0.491 6.491 7 N -0.179 5.179 8 C -0.466 4.466 9 H 0.100 0.900 10 C -0.197 4.197 11 N -0.534 5.534 12 Si 0.810 3.190 13 H -0.184 1.184 14 H -0.214 1.214 15 H -0.203 1.203 16 C 0.095 3.905 17 C -0.059 4.059 18 N -0.189 5.189 19 C -0.080 4.080 20 C -0.147 4.147 21 C -0.143 4.143 22 C -0.147 4.147 23 C -0.139 4.139 24 C -0.144 4.144 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.129 0.871 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.141 0.859 32 H 0.153 0.847 33 H 0.131 0.869 34 H 0.154 0.846 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.518 -1.893 14.516 16.024 hybrid contribution -0.275 0.636 -1.405 1.567 sum 6.242 -1.256 13.111 14.575 Atomic orbital electron populations 1.21848 0.95037 1.01127 1.01845 1.19733 0.95761 0.98730 0.90306 0.90553 1.21662 1.03572 0.98955 0.91480 1.20993 0.82084 0.87474 0.85160 1.90482 1.44153 1.27824 1.86636 1.43842 1.48467 1.20252 1.05338 1.19619 1.46543 0.95757 0.84708 0.89957 1.25863 0.95795 0.96613 1.01468 1.69942 1.47611 1.09334 1.26471 0.85042 0.79020 0.77871 0.77069 1.18430 1.21381 1.20277 1.19047 0.89159 0.76171 1.06150 1.29759 0.93754 0.93346 0.89067 1.80869 1.10026 1.14440 1.13539 1.19859 0.97863 0.94439 0.95807 1.21125 1.00605 0.94521 0.98412 1.21386 0.98027 1.00675 0.94228 1.21458 0.98335 0.94997 0.99921 1.21435 0.99879 0.95208 0.97363 1.21293 0.97933 1.00536 0.94688 0.93210 0.93374 0.92126 0.87053 0.90125 0.91676 0.85914 0.84711 0.86912 0.84633 0.83810 0.83790 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 8.74 71.98 0.63 -4.11 16 2 C -0.03 -0.82 2.21 -11.54 -0.03 -0.84 16 3 H 0.08 2.48 7.69 -2.39 -0.02 2.46 16 4 C -0.12 -3.84 3.52 29.85 0.11 -3.74 16 5 C 0.45 19.92 7.28 87.66 0.64 20.56 16 6 O -0.61 -31.04 13.62 -3.07 -0.04 -31.08 16 7 N -0.46 -21.03 2.60 -645.42 -1.68 -22.71 16 8 C -0.34 -17.53 9.32 84.04 0.78 -16.74 16 9 H 0.08 4.61 7.39 -2.91 -0.02 4.58 16 10 C 0.00 0.22 4.87 84.93 0.41 0.63 16 11 N -0.89 -44.77 9.48 21.66 0.21 -44.57 16 12 Si 0.99 40.11 29.60 68.60 2.03 42.14 16 13 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 14 H -0.29 -11.76 7.11 99.48 0.71 -11.06 16 15 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 16 C 0.22 8.41 4.91 84.58 0.42 8.83 16 17 C 0.26 11.14 12.95 89.45 1.16 12.29 16 18 N -0.51 -23.83 18.53 20.00 0.37 -23.46 16 19 C -0.08 -2.06 4.78 -19.87 -0.09 -2.16 16 20 C -0.13 -3.19 8.76 22.27 0.20 -2.99 16 21 C -0.13 -2.56 10.05 22.27 0.22 -2.34 16 22 C -0.13 -2.30 10.05 22.27 0.22 -2.07 16 23 C -0.12 -2.22 10.05 22.27 0.22 -2.00 16 24 C -0.13 -2.82 9.67 22.27 0.22 -2.61 16 25 H 0.05 2.03 5.95 -2.38 -0.01 2.01 16 26 H 0.05 1.54 7.37 -2.39 -0.02 1.52 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.11 2.99 7.42 -2.39 -0.02 2.97 16 29 H 0.08 2.66 6.95 -2.39 -0.02 2.65 16 30 H 0.27 13.24 8.31 -92.71 -0.77 12.47 16 31 H 0.12 4.81 6.46 -2.39 -0.02 4.79 16 32 H 0.14 3.67 6.68 -2.38 -0.02 3.65 16 33 H 0.11 2.90 7.16 -2.91 -0.02 2.88 16 34 H 0.14 2.22 8.06 -2.92 -0.02 2.20 16 35 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.13 2.59 7.95 -2.91 -0.02 2.57 16 Total: -1.00 -65.06 313.96 7.07 -57.99 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 1.08 Total: 18.97 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 5.10 Total: 2.71 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -1.10 Total: -90.74 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.04 Total: -31.08 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -65.06 7.07 -57.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059014363.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.096 kcal (2) G-P(sol) polarization free energy of solvation -65.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds