Wall clock time and date at job start Mon Mar 30 2020 01:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47115 * 2 1 4 4 C 1.50701 * 109.47002 * 240.00139 * 2 1 3 5 5 H 1.08000 * 120.00373 * 240.00081 * 4 2 1 6 6 C 1.37882 * 119.99879 * 59.99829 * 4 2 1 7 7 N 1.31519 * 119.99769 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00194 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47236 * 60.00201 * 8 6 4 10 10 H 1.48501 * 109.47232 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47144 * 299.99963 * 8 6 4 12 12 N 1.46503 * 109.47317 * 120.00730 * 2 1 3 13 13 C 1.46502 * 120.00141 * 59.99260 * 12 2 1 14 14 C 1.34774 * 119.99792 * 239.99882 * 12 2 1 15 15 O 1.21652 * 120.00134 * 0.95551 * 14 12 2 16 16 C 1.47061 * 119.99943 * 180.94890 * 14 12 2 17 17 C 1.35874 * 125.42832 * 167.79224 * 16 14 12 18 18 C 1.41584 * 107.72230 * 179.97438 * 17 16 14 19 19 C 1.40104 * 133.37279 * 179.97438 * 18 17 16 20 20 C 1.36438 * 119.82777 * 179.97438 * 19 18 17 21 21 C 1.38939 * 120.61402 * 0.02562 * 20 19 18 22 22 C 1.37665 * 120.65092 * 359.97438 * 21 20 19 23 23 C 1.39223 * 119.81202 * 359.97438 * 22 21 20 24 24 N 1.37475 * 133.18494 * 179.97438 * 23 22 21 25 25 H 0.97006 * 125.60585 * 0.04921 * 24 23 22 26 26 H 1.09002 * 109.47017 * 299.99519 * 1 2 3 27 27 H 1.08997 * 109.47422 * 59.99587 * 1 2 3 28 28 H 1.09003 * 109.47352 * 179.97438 * 1 2 3 29 29 H 0.96998 * 120.00028 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47215 * 263.61390 * 13 12 2 31 31 H 1.09000 * 109.46547 * 23.61681 * 13 12 2 32 32 H 1.09004 * 109.46432 * 143.60898 * 13 12 2 33 33 H 1.07996 * 126.13194 * 0.24184 * 17 16 14 34 34 H 1.08001 * 120.08662 * 0.02562 * 19 18 17 35 35 H 1.08003 * 119.69062 * 179.97438 * 20 19 18 36 36 H 1.08007 * 119.67370 * 179.97438 * 21 20 19 37 37 H 1.08007 * 120.09379 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6033 8 14 2.3211 -1.1202 -4.0080 9 1 1.8256 -2.5200 -4.0079 10 1 1.8267 -0.4196 -5.2205 11 1 3.8062 -1.1207 -4.0084 12 7 2.0184 -0.6908 1.1961 13 6 1.6644 -2.0934 1.4279 14 6 2.7933 -0.0358 2.0833 15 8 3.0728 1.1338 1.8997 16 6 3.3007 -0.7352 3.2733 17 6 4.2663 -0.2698 4.1084 18 6 4.4615 -1.2376 5.1232 19 6 5.3093 -1.3068 6.2364 20 6 5.2674 -2.3978 7.0546 21 6 4.3909 -3.4440 6.7945 22 6 3.5479 -3.3995 5.7070 23 6 3.5712 -2.2964 4.8580 24 7 2.8702 -1.9688 3.7216 25 1 2.1863 -2.5146 3.3030 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 0.7093 1.1620 -3.4843 30 1 0.8028 -2.1454 2.0934 31 1 1.4189 -2.5678 0.4777 32 1 2.5083 -2.6102 1.8848 33 1 4.7878 0.6715 4.0170 34 1 5.9937 -0.4982 6.4469 35 1 5.9223 -2.4491 7.9119 36 1 4.3707 -4.3007 7.4520 37 1 2.8699 -4.2176 5.5136 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063097879.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:30 Heat of formation + Delta-G solvation = 43.408435 kcal Electronic energy + Delta-G solvation = -20379.041265 eV Core-core repulsion = 17315.646873 eV Total energy + Delta-G solvation = -3063.394392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.54974 -38.95532 -36.70023 -35.60820 -33.05180 -32.07783 -30.20169 -29.09359 -28.63605 -26.50924 -25.31219 -23.97114 -22.01677 -21.42583 -20.33893 -19.22909 -17.39382 -17.05790 -16.46963 -15.69645 -15.48421 -15.06467 -14.59059 -14.23428 -13.97672 -13.96343 -13.64334 -13.05667 -12.76558 -12.68024 -12.60048 -11.88769 -11.69620 -11.61363 -11.45469 -11.12721 -10.92772 -10.89152 -10.79372 -10.36337 -10.25313 -9.83379 -9.40106 -9.25273 -8.50819 -8.20375 -7.91080 -7.61114 -6.14927 -4.23942 0.88980 1.62891 2.34667 3.06151 3.23358 3.29175 3.30480 3.66883 3.82941 3.94675 4.33135 4.70132 4.84227 4.97333 5.10326 5.16542 5.26990 5.34298 5.40894 5.58154 5.59883 5.76318 5.98551 6.05106 6.09694 6.41761 6.55154 6.59781 6.66696 6.73871 6.76775 6.94721 7.09505 7.25535 7.38946 7.48159 7.61140 7.90928 8.07597 8.32365 8.68772 8.85222 9.42686 10.90429 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033414 B = 0.004184 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.774524 B = 6690.971821 C = 6850.329997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.067 0.933 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.585 5.585 13 C 0.062 3.938 14 C 0.567 3.433 15 O -0.530 6.530 16 C 0.040 3.960 17 C -0.128 4.128 18 C -0.114 4.114 19 C -0.064 4.064 20 C -0.154 4.154 21 C -0.098 4.098 22 C -0.130 4.130 23 C 0.098 3.902 24 N -0.582 5.582 25 H 0.424 0.576 26 H 0.012 0.988 27 H 0.096 0.904 28 H 0.029 0.971 29 H 0.265 0.735 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.154 0.846 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.564 -9.038 15.383 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.085 0.915 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.316 5.316 13 C -0.083 4.083 14 C 0.353 3.647 15 O -0.407 6.407 16 C -0.070 4.070 17 C -0.154 4.154 18 C -0.119 4.119 19 C -0.082 4.082 20 C -0.173 4.173 21 C -0.117 4.117 22 C -0.151 4.151 23 C -0.012 4.012 24 N -0.195 5.195 25 H 0.271 0.729 26 H 0.031 0.969 27 H 0.114 0.886 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.171 0.829 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.442 -8.332 14.948 17.456 hybrid contribution -0.078 -0.917 -1.060 1.403 sum 3.364 -9.249 13.888 17.021 Atomic orbital electron populations 1.22103 0.97891 0.99473 1.01069 1.19049 0.91048 0.94639 0.79423 0.91491 1.21250 1.32268 1.13264 0.90214 0.92244 1.24888 0.94797 0.94940 0.98991 1.69864 1.36013 1.22404 1.24067 0.86522 0.79317 0.79507 0.81856 1.20224 1.21070 1.20156 1.48224 1.48456 1.11170 1.23726 1.22020 0.98426 0.84203 1.03617 1.17282 0.79613 0.86308 0.81473 1.90805 1.58806 1.15287 1.75824 1.20638 1.00800 0.86936 0.98592 1.20864 0.99845 1.00334 0.94374 1.18257 1.00064 0.95491 0.98110 1.20394 0.97138 0.97942 0.92759 1.20572 1.01164 0.94768 1.00806 1.20794 0.95733 0.98653 0.96567 1.20039 1.02591 0.96610 0.95857 1.18472 0.95886 0.96951 0.89899 1.43354 1.35398 1.17768 1.22951 0.72879 0.96859 0.88571 0.95149 0.92474 0.93471 0.88512 0.92201 0.82877 0.85970 0.86211 0.85914 0.86262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.97 37.16 0.33 -3.09 16 2 C 0.26 6.47 2.63 -69.08 -0.18 6.29 16 3 H 0.07 1.95 6.90 -51.93 -0.36 1.59 16 4 C -0.53 -14.05 7.95 -34.44 -0.27 -14.32 16 5 H 0.06 1.54 7.44 -52.49 -0.39 1.15 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.60 11.32 55.43 0.63 -23.97 16 8 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.59 -12.35 2.75 -176.67 -0.49 -12.83 16 13 C 0.06 0.99 7.80 59.85 0.47 1.45 16 14 C 0.57 12.15 7.65 -12.68 -0.10 12.05 16 15 O -0.53 -13.24 16.20 5.23 0.08 -13.16 16 16 C 0.04 0.71 6.56 -82.29 -0.54 0.17 16 17 C -0.13 -2.10 10.56 -39.15 -0.41 -2.51 16 18 C -0.11 -1.67 6.16 -106.93 -0.66 -2.33 16 19 C -0.06 -0.76 10.06 -39.53 -0.40 -1.16 16 20 C -0.15 -1.58 9.97 -39.97 -0.40 -1.98 16 21 C -0.10 -0.97 10.01 -39.53 -0.40 -1.37 16 22 C -0.13 -1.46 10.08 -39.42 -0.40 -1.86 16 23 C 0.10 1.36 7.25 -83.98 -0.61 0.75 16 24 N -0.58 -8.38 5.08 -7.36 -0.04 -8.42 16 25 H 0.42 5.18 4.91 -40.82 -0.20 4.98 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 28 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 29 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 31 H 0.10 1.62 7.12 -51.93 -0.37 1.25 16 32 H 0.06 0.84 5.23 -51.93 -0.27 0.56 16 33 H 0.15 2.39 8.06 -52.49 -0.42 1.97 16 34 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 306.89 15.07 4.62 4.62 Total: -1.00 -30.90 306.89 -8.24 -39.14 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -4.37 Total: 5.16 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -3.66 Total: -6.20 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: 0.10 Total: -45.22 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.16 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.90 -8.24 -39.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097879.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.552 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds