Wall clock time and date at job start Mon Mar 30 2020 01:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 109.46869 * 2 1 4 4 C 1.50704 * 109.46965 * 240.00727 * 2 1 3 5 5 H 1.07994 * 119.99499 * 268.45999 * 4 2 1 6 6 C 1.37878 * 120.00120 * 88.45544 * 4 2 1 7 7 N 1.31511 * 119.99823 * 169.45794 * 6 4 2 8 8 Si 1.86799 * 120.00024 * 349.46226 * 6 4 2 9 9 H 1.48500 * 109.47552 * 90.40943 * 8 6 4 10 10 H 1.48499 * 109.47044 * 210.41096 * 8 6 4 11 11 H 1.48503 * 109.46940 * 330.40810 * 8 6 4 12 12 N 1.46498 * 109.47544 * 120.00534 * 2 1 3 13 13 C 1.46497 * 119.99928 * 59.99839 * 12 2 1 14 14 C 1.34769 * 119.99830 * 240.00026 * 12 2 1 15 15 O 1.21614 * 120.00579 * 6.95350 * 14 12 2 16 16 C 1.47379 * 120.00041 * 186.95313 * 14 12 2 17 17 C 1.39317 * 120.34525 * 323.10432 * 16 14 12 18 18 C 1.38271 * 120.19998 * 179.71259 * 17 16 14 19 19 C 1.38048 * 120.88633 * 0.56642 * 18 17 16 20 20 C 1.38981 * 120.26686 * 359.71394 * 19 18 17 21 21 N 1.37798 * 133.37287 * 180.02562 * 20 19 18 22 22 H 0.97001 * 125.07407 * 359.94617 * 21 20 19 23 23 C 1.36549 * 109.85444 * 179.97438 * 21 20 19 24 24 C 1.34549 * 109.89417 * 359.97438 * 23 21 20 25 25 C 1.40657 * 119.51952 * 0.02562 * 20 19 18 26 26 H 1.09000 * 109.46649 * 294.55242 * 1 2 3 27 27 H 1.08992 * 109.47382 * 54.55349 * 1 2 3 28 28 H 1.08991 * 109.46947 * 174.55920 * 1 2 3 29 29 H 0.96997 * 119.99902 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47201 * 266.20296 * 13 12 2 31 31 H 1.08995 * 109.46875 * 146.20360 * 13 12 2 32 32 H 1.08999 * 109.47180 * 26.20369 * 13 12 2 33 33 H 1.08004 * 119.89718 * 359.97438 * 17 16 14 34 34 H 1.08005 * 119.55773 * 180.27742 * 18 17 16 35 35 H 1.07998 * 119.86967 * 179.73756 * 19 18 17 36 36 H 1.08001 * 125.05005 * 179.97438 * 23 21 20 37 37 H 1.08000 * 126.48969 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.2360 -1.7703 -1.1968 6 6 2.2318 -0.0068 -2.3995 7 7 2.8607 -0.5710 -3.4073 8 14 1.6088 1.7477 -2.5516 9 1 2.6673 2.6893 -2.1065 10 1 1.2603 2.0281 -3.9676 11 1 0.4034 1.9203 -1.7016 12 7 2.0185 -0.6907 1.1961 13 6 1.6646 -2.0933 1.4278 14 6 2.7933 -0.0358 2.0832 15 8 2.9834 1.1590 1.9590 16 6 3.4104 -0.7674 3.2039 17 6 2.7188 -1.7973 3.8379 18 6 3.3029 -2.4857 4.8852 19 6 4.5694 -2.1608 5.3280 20 6 5.2823 -1.1345 4.7196 21 7 6.5321 -0.5947 4.9330 22 1 7.1574 -0.8885 5.6139 23 6 6.7588 0.4160 4.0432 24 6 5.6909 0.5657 3.2385 25 6 4.7039 -0.4284 3.6495 26 1 -0.3632 0.4270 0.9348 27 1 -0.3634 0.5959 -0.8371 28 1 -0.3633 -1.0230 -0.0974 29 1 3.0014 -0.0760 -4.2295 30 1 0.7753 -2.1446 2.0560 31 1 2.4914 -2.5989 1.9265 32 1 1.4638 -2.5798 0.4733 33 1 1.7250 -2.0615 3.5076 34 1 2.7591 -3.2852 5.3663 35 1 5.0082 -2.7065 6.1501 36 1 7.6612 1.0072 3.9928 37 1 5.5837 1.2859 2.4409 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063097885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:51 Heat of formation + Delta-G solvation = 18.054409 kcal Electronic energy + Delta-G solvation = -20769.874145 eV Core-core repulsion = 17705.380320 eV Total energy + Delta-G solvation = -3064.493825 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.25577 -40.67514 -37.67352 -37.17961 -34.74675 -33.17238 -32.13248 -30.24394 -29.72924 -27.81068 -27.23158 -24.96635 -23.06876 -22.54324 -21.64032 -20.36722 -19.23745 -18.54678 -17.86121 -17.32429 -16.70454 -16.30000 -16.23680 -15.72301 -15.30435 -14.95909 -14.74632 -14.53064 -14.11153 -14.06180 -13.85381 -13.54373 -13.49625 -13.22789 -13.18162 -12.63911 -12.43354 -12.36371 -12.22980 -12.00475 -11.60526 -11.31088 -10.81533 -10.73630 -10.54900 -9.38372 -9.15430 -8.64415 -8.37777 -6.39872 -0.16037 0.63898 1.28239 1.33748 1.41479 1.68392 1.93456 2.24389 2.28608 2.35405 2.97873 3.02903 3.63207 3.95791 4.06931 4.20275 4.30334 4.41872 4.46855 4.50083 4.61790 4.68042 4.73751 4.78878 4.90291 4.97932 4.99883 5.12694 5.14079 5.34729 5.47896 5.51853 5.56553 5.71134 5.73294 5.80142 6.14608 6.18200 6.63160 6.73003 6.76829 7.22191 7.36664 8.77622 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023704 B = 0.005679 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.930491 B = 4929.029555 C = 5487.209929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.229 3.771 3 H 0.031 0.969 4 C -0.525 4.525 5 H 0.051 0.949 6 C 0.027 3.973 7 N -0.934 5.934 8 Si 0.918 3.082 9 H -0.290 1.290 10 H -0.275 1.275 11 H -0.227 1.227 12 N -0.590 5.590 13 C 0.073 3.927 14 C 0.540 3.460 15 O -0.599 6.599 16 C -0.118 4.118 17 C -0.114 4.114 18 C -0.108 4.108 19 C -0.096 4.096 20 C 0.074 3.926 21 N -0.578 5.578 22 H 0.437 0.563 23 C 0.085 3.915 24 C -0.253 4.253 25 C -0.099 4.099 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.268 0.732 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.153 0.847 34 H 0.173 0.827 35 H 0.164 0.836 36 H 0.214 0.786 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.715 -5.360 21.111 22.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.126 3.874 3 H 0.049 0.951 4 C -0.564 4.564 5 H 0.069 0.931 6 C -0.173 4.173 7 N -0.573 5.573 8 Si 0.743 3.257 9 H -0.216 1.216 10 H -0.200 1.200 11 H -0.150 1.150 12 N -0.319 5.319 13 C -0.068 4.068 14 C 0.331 3.669 15 O -0.482 6.482 16 C -0.122 4.122 17 C -0.133 4.133 18 C -0.127 4.127 19 C -0.116 4.116 20 C -0.033 4.033 21 N -0.183 5.183 22 H 0.278 0.722 23 C -0.043 4.043 24 C -0.278 4.278 25 C -0.105 4.105 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.170 0.830 34 H 0.190 0.810 35 H 0.182 0.818 36 H 0.231 0.769 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.943 -4.775 20.916 21.813 hybrid contribution 0.261 1.026 -0.964 1.431 sum 4.204 -3.749 19.952 20.732 Atomic orbital electron populations 1.22263 0.95675 1.02246 1.00339 1.18964 0.92675 0.93041 0.82726 0.95127 1.21332 1.44304 0.96263 0.94464 0.93083 1.25640 0.94059 1.01855 0.95714 1.70038 1.41307 1.40052 1.05921 0.86269 0.80791 0.80478 0.78196 1.21623 1.20030 1.15047 1.48045 1.48843 1.13354 1.21654 1.22282 1.01196 0.80749 1.02620 1.18920 0.78311 0.86712 0.82971 1.90652 1.63695 1.16981 1.76895 1.19401 0.95072 0.99729 0.97984 1.21827 1.01206 0.93692 0.96602 1.21181 0.94791 1.00586 0.96120 1.20631 0.94671 0.95438 1.00899 1.18395 0.87828 0.98859 0.98228 1.41638 1.14109 1.30466 1.32113 0.72200 1.22318 0.99820 0.91891 0.90265 1.21819 0.95784 1.04392 1.05842 1.19336 0.94157 0.98785 0.98239 0.93573 0.92403 0.91494 0.92311 0.89697 0.89792 0.91636 0.82967 0.80954 0.81850 0.76917 0.86689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.23 8.85 71.98 0.64 -5.59 16 2 C 0.23 11.61 2.20 44.25 0.10 11.71 16 3 H 0.03 1.74 5.09 -2.38 -0.01 1.73 16 4 C -0.53 -30.45 8.68 25.60 0.22 -30.23 16 5 H 0.05 3.16 6.91 -2.91 -0.02 3.14 16 6 C 0.03 1.60 5.47 84.66 0.46 2.07 16 7 N -0.93 -58.95 13.96 21.45 0.30 -58.65 16 8 Si 0.92 46.23 26.41 68.60 1.81 48.04 16 9 H -0.29 -15.24 7.11 99.48 0.71 -14.53 16 10 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.23 -10.41 5.18 99.48 0.52 -9.90 16 12 N -0.59 -26.54 2.75 -830.74 -2.29 -28.82 16 13 C 0.07 2.49 7.94 127.77 1.01 3.50 16 14 C 0.54 25.35 7.34 86.65 0.64 25.98 16 15 O -0.60 -32.95 15.59 -4.07 -0.06 -33.01 16 16 C -0.12 -4.45 5.37 -19.95 -0.11 -4.55 16 17 C -0.11 -3.07 7.49 22.54 0.17 -2.90 16 18 C -0.11 -2.06 9.99 22.23 0.22 -1.84 16 19 C -0.10 -1.79 10.05 22.40 0.23 -1.57 16 20 C 0.07 1.88 7.27 38.97 0.28 2.16 16 21 N -0.58 -10.88 6.06 -187.64 -1.14 -12.02 16 22 H 0.44 4.12 8.96 -92.71 -0.83 3.29 16 23 C 0.08 1.93 11.82 83.11 0.98 2.91 16 24 C -0.25 -8.94 10.50 23.44 0.25 -8.69 16 25 C -0.10 -3.57 6.11 -20.01 -0.12 -3.69 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.06 2.47 5.46 -2.39 -0.01 2.45 16 28 H 0.07 2.58 7.85 -2.39 -0.02 2.56 16 29 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 30 H 0.08 2.20 7.05 -2.39 -0.02 2.19 16 31 H 0.08 2.57 5.48 -2.39 -0.01 2.56 16 32 H 0.06 2.42 6.65 -2.39 -0.02 2.40 16 33 H 0.15 3.52 5.02 -2.91 -0.01 3.51 16 34 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 36 H 0.21 2.79 8.06 -2.91 -0.02 2.76 16 37 H 0.11 4.75 7.84 -2.91 -0.02 4.73 16 Total: -1.00 -84.27 300.20 3.68 -80.59 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.09 Total: 14.60 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 4.97 Total: -10.73 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -3.13 Total: -99.49 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -0.06 Total: -33.01 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.81 Total: 48.04 kcal Total: -84.27 3.68 -80.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.640 kcal (2) G-P(sol) polarization free energy of solvation -84.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds