Wall clock time and date at job start Mon Mar 30 2020 01:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46782 * 2 1 4 4 C 1.47194 * 109.47084 * 119.99980 * 2 1 3 5 5 N 2.60799 * 109.46990 * 120.00092 * 2 1 3 6 6 C 1.52996 * 109.47167 * 240.00510 * 2 1 3 7 7 N 1.46498 * 109.47447 * 64.99465 * 6 2 1 8 8 C 1.46494 * 120.00471 * 269.99890 * 7 6 2 9 9 C 1.34778 * 119.99685 * 90.00029 * 7 6 2 10 10 O 1.21548 * 120.00096 * 3.99029 * 9 7 6 11 11 C 1.47893 * 120.00052 * 183.99182 * 9 7 6 12 12 C 1.39926 * 120.02160 * 316.75928 * 11 9 7 13 13 C 1.38322 * 120.35623 * 180.29850 * 12 11 9 14 14 C 1.37753 * 120.41394 * 359.95482 * 13 12 11 15 15 C 1.40753 * 120.03915 * 0.04777 * 14 13 12 16 16 C 1.41440 * 120.18109 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00477 * 148.26952 * 16 15 14 18 18 C 1.39941 * 119.99434 * 328.26731 * 16 15 14 19 19 N 1.30823 * 119.99810 * 163.10423 * 18 16 15 20 20 Si 1.86804 * 120.00160 * 343.10048 * 18 16 15 21 21 H 1.48503 * 109.46821 * 94.55191 * 20 18 16 22 22 H 1.48497 * 109.47181 * 214.55190 * 20 18 16 23 23 H 1.48499 * 109.47046 * 334.55291 * 20 18 16 24 24 C 1.38984 * 120.02449 * 137.03889 * 11 9 7 25 25 H 1.09004 * 109.47613 * 299.99545 * 1 2 3 26 26 H 1.08999 * 109.47573 * 60.00022 * 1 2 3 27 27 H 1.09005 * 109.46783 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46816 * 304.99432 * 6 2 1 29 29 H 1.09004 * 109.47367 * 185.00087 * 6 2 1 30 30 H 1.08997 * 109.47273 * 266.60318 * 8 7 6 31 31 H 1.09010 * 109.46902 * 26.60090 * 8 7 6 32 32 H 1.09003 * 109.47202 * 146.59669 * 8 7 6 33 33 H 1.07995 * 119.81917 * 0.25708 * 12 11 9 34 34 H 1.07993 * 119.79441 * 179.97438 * 13 12 11 35 35 H 1.08000 * 119.98556 * 180.02562 * 14 13 12 36 36 H 0.96996 * 120.00029 * 180.02562 * 19 18 16 37 37 H 1.08003 * 120.20608 * 359.69987 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6939 1.2018 5 7 2.3993 -1.2295 2.1294 6 6 2.0400 -0.7211 -1.2493 7 7 1.6524 0.0355 -2.4424 8 6 0.3746 -0.2422 -3.1028 9 6 2.4714 0.9871 -2.9324 10 8 3.5627 1.1680 -2.4287 11 6 2.0424 1.8111 -4.0831 12 6 1.4044 1.2114 -5.1745 13 6 1.0057 1.9747 -6.2570 14 6 1.2310 3.3335 -6.2730 15 6 1.8714 3.9544 -5.1842 16 6 2.1038 5.3495 -5.1973 17 1 2.0988 5.9065 -4.2721 18 6 2.3404 6.0081 -6.4092 19 7 2.2277 7.3095 -6.4793 20 14 2.8172 5.0287 -7.9268 21 1 1.6010 4.7284 -8.7243 22 1 3.7655 5.8216 -8.7498 23 1 3.4639 3.7578 -7.5128 24 6 2.2777 3.1809 -4.0837 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6054 -1.7197 -1.2952 29 1 3.1263 -0.7994 -1.2056 30 1 0.5284 -0.9683 -3.9011 31 1 -0.3302 -0.6457 -2.3756 32 1 -0.0253 0.6806 -3.5231 33 1 1.2229 0.1468 -5.1719 34 1 0.5144 1.5023 -7.0948 35 1 0.9165 3.9229 -7.1217 36 1 2.3913 7.7660 -7.3193 37 1 2.7695 3.6481 -3.2432 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068081360.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:38 Heat of formation + Delta-G solvation = -6.807504 kcal Electronic energy + Delta-G solvation = -20129.792940 eV Core-core repulsion = 17064.221022 eV Total energy + Delta-G solvation = -3065.571918 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.30931 -39.23526 -38.32566 -36.80429 -35.55325 -34.16104 -32.29311 -31.68654 -28.86926 -27.09917 -26.89451 -24.90137 -23.42348 -22.44075 -20.73355 -19.16132 -18.70086 -17.80035 -17.49181 -17.11268 -16.59196 -16.24622 -15.85588 -15.43562 -15.00901 -14.86740 -14.50722 -14.24177 -14.09235 -13.89353 -13.81023 -13.78256 -13.46686 -13.17800 -12.98271 -12.82640 -12.63058 -12.34088 -12.25971 -12.20980 -11.90532 -11.73323 -11.49915 -11.19115 -10.70185 -9.73407 -9.52790 -9.44749 -8.86679 -6.50940 0.37079 0.79472 1.27700 1.43567 1.49877 1.53935 1.70939 1.87541 2.05875 2.14183 2.64267 2.97023 3.45153 3.68038 3.85199 3.97383 4.21629 4.33450 4.39169 4.51610 4.58166 4.65163 4.73456 4.86990 4.94174 4.95732 4.97798 5.05781 5.11842 5.22008 5.35503 5.49011 5.58289 5.70498 5.80023 5.90982 6.14800 6.33790 6.40296 6.47742 6.70639 6.80141 7.16984 8.22565 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031808 B = 0.004277 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.075638 B = 6544.359511 C = 6870.821302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.010 4.010 3 H 0.104 0.896 4 C 0.243 3.757 5 N -0.483 5.483 6 C 0.124 3.876 7 N -0.598 5.598 8 C 0.060 3.940 9 C 0.564 3.436 10 O -0.581 6.581 11 C -0.104 4.104 12 C -0.180 4.180 13 C -0.082 4.082 14 C -0.226 4.226 15 C 0.068 3.932 16 C -0.490 4.490 17 H 0.051 0.949 18 C 0.046 3.954 19 N -0.855 5.855 20 Si 0.963 3.037 21 H -0.246 1.246 22 H -0.282 1.282 23 H -0.254 1.254 24 C -0.170 4.170 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.127 0.873 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.103 0.897 36 H 0.293 0.707 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.404 -16.718 2.050 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 H 0.121 0.879 4 C -0.075 4.075 5 N -0.159 5.159 6 C 0.000 4.000 7 N -0.329 5.329 8 C -0.081 4.081 9 C 0.354 3.646 10 O -0.462 6.462 11 C -0.107 4.107 12 C -0.199 4.199 13 C -0.100 4.100 14 C -0.246 4.246 15 C 0.066 3.934 16 C -0.520 4.520 17 H 0.069 0.931 18 C -0.168 4.168 19 N -0.482 5.482 20 Si 0.786 3.214 21 H -0.170 1.170 22 H -0.208 1.208 23 H -0.178 1.178 24 C -0.190 4.190 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.145 0.855 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.094 0.906 33 H 0.171 0.829 34 H 0.163 0.837 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.280 -17.173 3.629 19.002 hybrid contribution 0.545 1.126 -0.539 1.363 sum -6.735 -16.047 3.089 17.675 Atomic orbital electron populations 1.21974 0.89319 1.04676 1.04299 1.19391 0.99333 0.99016 0.85517 0.87860 1.29253 0.91797 0.92392 0.94008 1.81243 1.10532 1.11300 1.12873 1.21471 1.01493 0.95550 0.81491 1.47635 1.20971 1.36188 1.28153 1.22543 0.83291 1.03074 0.99212 1.18751 0.83636 0.79486 0.82698 1.90723 1.23381 1.69862 1.62232 1.19595 1.02084 0.93108 0.95891 1.21195 1.04611 1.00365 0.93774 1.21036 0.98139 0.92556 0.98291 1.21396 1.06459 0.96503 1.00218 1.17729 0.90527 0.92665 0.92463 1.19450 1.45582 0.92407 0.94598 0.93103 1.26820 0.91498 0.95755 1.02706 1.69717 1.37420 1.10986 1.30056 0.85518 0.79623 0.79173 0.77068 1.17007 1.20834 1.17790 1.21094 1.04794 0.92864 1.00240 0.91436 0.89384 0.89387 0.85536 0.90999 0.90239 0.87341 0.90564 0.82939 0.83710 0.87939 0.89666 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.13 71.98 0.59 -0.94 16 2 C -0.01 -0.16 2.97 -12.60 -0.04 -0.20 16 3 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 4 C 0.24 5.10 14.65 89.44 1.31 6.41 16 5 N -0.48 -12.89 18.54 20.00 0.37 -12.52 16 6 C 0.12 2.10 4.87 86.38 0.42 2.52 16 7 N -0.60 -12.61 2.70 -850.14 -2.29 -14.90 16 8 C 0.06 0.79 7.91 127.77 1.01 1.80 16 9 C 0.56 18.73 7.30 86.80 0.63 19.37 16 10 O -0.58 -24.03 16.51 -3.87 -0.06 -24.10 16 11 C -0.10 -3.84 5.08 -20.13 -0.10 -3.94 16 12 C -0.18 -5.48 7.64 22.70 0.17 -5.30 16 13 C -0.08 -2.72 10.01 22.17 0.22 -2.50 16 14 C -0.23 -9.59 7.16 22.77 0.16 -9.43 16 15 C 0.07 3.36 5.06 -21.32 -0.11 3.25 16 16 C -0.49 -27.37 9.57 23.47 0.22 -27.15 16 17 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 18 C 0.05 2.43 5.41 85.26 0.46 2.89 16 19 N -0.86 -46.84 13.93 21.83 0.30 -46.54 16 20 Si 0.96 41.39 24.54 68.60 1.68 43.07 16 21 H -0.25 -9.50 6.71 99.48 0.67 -8.84 16 22 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.25 -11.19 6.88 99.48 0.68 -10.50 16 24 C -0.17 -7.82 9.40 23.01 0.22 -7.60 16 25 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.09 0.90 5.96 -2.39 -0.01 0.89 16 27 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.13 1.18 8.07 -2.38 -0.02 1.16 16 29 H 0.07 1.59 7.37 -2.39 -0.02 1.57 16 30 H 0.08 0.79 6.97 -2.39 -0.02 0.77 16 31 H 0.11 0.67 6.13 -2.38 -0.01 0.65 16 32 H 0.08 1.30 5.96 -2.39 -0.01 1.29 16 33 H 0.15 3.26 5.74 -2.91 -0.02 3.25 16 34 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 35 H 0.10 4.33 4.86 -2.91 -0.01 4.32 16 36 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 37 H 0.09 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -70.49 310.02 6.21 -64.29 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 1.03 Total: 11.51 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 5.17 Total: -20.81 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -1.62 Total: -73.95 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.06 Total: -24.10 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.68 Total: 43.07 kcal Total: -70.49 6.21 -64.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068081360.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.479 kcal (2) G-P(sol) polarization free energy of solvation -70.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds