Wall clock time and date at job start Mon Mar 30 2020 01:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47356 * 2 1 4 4 C 1.36938 * 119.99877 * 84.62187 * 3 2 1 5 5 H 1.08000 * 119.99999 * 321.25837 * 4 3 2 6 6 C 1.38817 * 119.99591 * 141.25780 * 4 3 2 7 7 N 1.31614 * 120.00275 * 339.47599 * 6 4 3 8 8 Si 1.86803 * 119.99691 * 159.47948 * 6 4 3 9 9 H 1.48499 * 109.47042 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47133 * 119.99875 * 8 6 4 11 11 H 1.48510 * 109.46619 * 240.00024 * 8 6 4 12 12 C 1.46492 * 119.99964 * 264.62358 * 3 2 1 13 13 C 1.50709 * 109.47106 * 89.99841 * 12 3 2 14 14 C 1.35230 * 126.65970 * 90.00184 * 13 12 3 15 15 C 1.42277 * 103.93533 * 179.97438 * 14 13 12 16 16 C 1.48440 * 126.93956 * 180.02562 * 15 14 13 17 17 C 1.39324 * 120.11436 * 359.71802 * 16 15 14 18 18 C 1.38022 * 119.87711 * 179.77285 * 17 16 15 19 19 C 1.38325 * 120.12166 * 0.48391 * 18 17 16 20 20 C 1.38324 * 120.23383 * 359.79056 * 19 18 17 21 21 C 1.38019 * 120.12186 * 359.95439 * 20 19 18 22 22 N 1.30988 * 106.12769 * 359.97438 * 15 14 13 23 23 O 1.20911 * 111.42566 * 359.73056 * 22 15 14 24 24 H 1.08992 * 109.46746 * 60.00006 * 1 2 3 25 25 H 1.09000 * 109.47016 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46689 * 300.00426 * 1 2 3 27 27 H 1.09003 * 109.47181 * 239.99445 * 2 1 3 28 28 H 1.09003 * 109.47017 * 119.99608 * 2 1 3 29 29 H 0.97001 * 120.00186 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47146 * 209.99853 * 12 3 2 31 31 H 1.09000 * 109.47191 * 330.00191 * 12 3 2 32 32 H 1.08007 * 128.03131 * 359.97438 * 14 13 12 33 33 H 1.08000 * 120.06200 * 0.02567 * 17 16 15 34 34 H 1.08005 * 119.94361 * 180.27540 * 18 17 16 35 35 H 1.07992 * 119.88255 * 179.76764 * 19 18 17 36 36 H 1.07997 * 119.93610 * 179.97438 * 20 19 18 37 37 H 1.08004 * 120.05679 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1419 2.0638 1.1807 5 1 1.3983 1.9429 1.9546 6 6 3.2228 2.9109 1.3828 7 7 4.3133 2.7706 0.6594 8 14 3.1297 4.2502 2.6818 9 1 1.8056 4.1983 3.3522 10 1 4.2025 4.0404 3.6869 11 1 3.3066 5.5769 2.0383 12 6 2.3747 2.0321 -1.2631 13 6 1.1631 2.7269 -1.8294 14 6 0.7793 4.0018 -1.5928 15 6 -0.4098 4.1497 -2.3600 16 6 -1.2559 5.3644 -2.4688 17 6 -0.9140 6.5195 -1.7688 18 6 -1.7017 7.6477 -1.8772 19 6 -2.8343 7.6298 -2.6712 20 6 -3.1814 6.4839 -3.3638 21 6 -2.3979 5.3518 -3.2666 22 7 -0.6065 2.9978 -2.9518 23 8 0.2603 2.2031 -2.6708 24 1 -0.3632 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.0687 3.3623 0.8009 30 1 3.1630 2.7636 -1.0852 31 1 2.7277 1.2825 -1.9713 32 1 1.2631 4.7371 -0.9668 33 1 -0.0320 6.5334 -1.1457 34 1 -1.4352 8.5451 -1.3386 35 1 -3.4499 8.5136 -2.7503 36 1 -4.0669 6.4752 -3.9819 37 1 -2.6697 4.4578 -3.8082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068958326.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:17 Heat of formation + Delta-G solvation = 98.624199 kcal Electronic energy + Delta-G solvation = -20454.475116 eV Core-core repulsion = 17393.475059 eV Total energy + Delta-G solvation = -3061.000056 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.11331 -38.99377 -36.22573 -33.89294 -32.01004 -31.82275 -30.89843 -30.02153 -28.87171 -26.05169 -23.86252 -23.59675 -22.75971 -21.55309 -20.61322 -19.63184 -17.39983 -16.90736 -16.42795 -16.02186 -15.39589 -15.11047 -14.61746 -13.89489 -13.86732 -13.70484 -13.42093 -12.96402 -12.90341 -12.58656 -12.46394 -12.09639 -11.43196 -11.30984 -11.19766 -11.06875 -10.90525 -10.81356 -10.58956 -10.36394 -10.23440 -10.05275 -9.92823 -8.94077 -8.69238 -8.58985 -8.28096 -6.80865 -6.01335 -3.58696 1.03373 1.41569 2.32392 2.98612 3.24345 3.34631 3.38502 3.90912 3.98943 4.34690 4.43107 4.81688 4.95331 5.10422 5.15338 5.26472 5.41700 5.45129 5.63474 5.81666 5.85991 6.00819 6.04361 6.07710 6.20923 6.33296 6.37727 6.46748 6.48689 6.60387 6.63408 6.72602 6.76840 6.85321 6.96909 7.09948 7.23721 7.68969 8.33108 8.90888 8.97020 9.57997 10.16822 11.01395 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017073 B = 0.006037 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.612467 B = 4636.908312 C = 5735.086830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.140 3.860 3 N -0.569 5.569 4 C -0.262 4.262 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.285 1.285 12 C 0.211 3.789 13 C -0.006 4.006 14 C -0.229 4.229 15 C 0.041 3.959 16 C -0.003 4.003 17 C -0.097 4.097 18 C -0.120 4.120 19 C -0.121 4.121 20 C -0.123 4.123 21 C -0.099 4.099 22 N -0.379 5.379 23 O 0.088 5.912 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.047 0.953 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.259 0.741 30 H 0.128 0.872 31 H 0.053 0.947 32 H 0.163 0.837 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.698 5.799 -5.929 12.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.015 3.985 3 N -0.289 5.289 4 C -0.392 4.392 5 H 0.081 0.919 6 C -0.183 4.183 7 N -0.526 5.526 8 Si 0.724 3.276 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.211 1.211 12 C 0.082 3.918 13 C -0.072 4.072 14 C -0.253 4.253 15 C -0.115 4.115 16 C -0.004 4.004 17 C -0.116 4.116 18 C -0.138 4.138 19 C -0.139 4.139 20 C -0.141 4.141 21 C -0.118 4.118 22 N -0.084 5.084 23 O 0.023 5.977 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.145 0.855 31 H 0.071 0.929 32 H 0.180 0.820 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.429 5.320 -6.730 12.747 hybrid contribution 0.295 1.339 1.269 1.868 sum -9.134 6.658 -5.461 12.553 Atomic orbital electron populations 1.22300 0.99787 0.99319 1.01335 1.20955 0.91789 0.86391 0.99410 1.43792 1.75245 1.08264 1.01560 1.19062 1.03962 1.22400 0.93730 0.91949 1.25229 0.94079 1.00945 0.98016 1.69943 1.02806 1.37670 1.42190 0.86349 0.77997 0.81924 0.81361 1.19868 1.21295 1.21094 1.19891 0.88072 0.97702 0.86101 1.26940 0.95848 0.93696 0.90694 1.22297 0.98150 0.98465 1.06351 1.21908 0.96748 0.93295 0.99582 1.17813 0.94019 0.90674 0.97905 1.21228 0.99962 0.91951 0.98481 1.21065 0.95281 0.98113 0.99374 1.21193 0.97204 0.98131 0.97386 1.21057 0.99806 0.93081 1.00167 1.21228 0.93899 0.98646 0.98009 1.73960 1.11494 1.00932 1.22046 1.84730 1.27284 1.36238 1.49417 0.93650 0.94166 0.93347 0.94139 0.93059 0.93105 0.85501 0.92879 0.81988 0.85317 0.85706 0.86095 0.85927 0.85587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 10.21 37.16 0.38 -2.80 16 2 C 0.14 2.87 6.44 -4.04 -0.03 2.85 16 3 N -0.57 -13.39 2.41 -174.60 -0.42 -13.81 16 4 C -0.26 -6.74 9.45 -15.06 -0.14 -6.88 16 5 H 0.06 1.64 7.91 -52.49 -0.42 1.23 16 6 C 0.02 0.47 4.97 -17.43 -0.09 0.38 16 7 N -0.88 -23.46 11.50 55.49 0.64 -22.82 16 8 Si 0.90 20.29 29.60 -169.99 -5.03 15.26 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.21 4.66 5.89 -5.19 -0.03 4.63 16 13 C -0.01 -0.12 6.87 -35.38 -0.24 -0.36 16 14 C -0.23 -4.64 10.45 -39.10 -0.41 -5.05 16 15 C 0.04 0.79 7.06 -82.47 -0.58 0.21 16 16 C 0.00 -0.05 5.88 -104.89 -0.62 -0.67 16 17 C -0.10 -1.42 9.60 -39.26 -0.38 -1.80 16 18 C -0.12 -1.46 10.03 -39.63 -0.40 -1.86 16 19 C -0.12 -1.35 10.04 -39.52 -0.40 -1.74 16 20 C -0.12 -1.48 10.03 -39.63 -0.40 -1.87 16 21 C -0.10 -1.45 9.70 -39.26 -0.38 -1.84 16 22 N -0.38 -7.64 11.82 33.32 0.39 -7.25 16 23 O 0.09 1.81 10.42 17.11 0.18 1.99 16 24 H 0.04 0.90 7.18 -51.93 -0.37 0.53 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.04 0.76 7.83 -51.93 -0.41 0.36 16 28 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 29 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.13 3.07 5.57 -51.93 -0.29 2.78 16 31 H 0.05 1.08 7.86 -51.93 -0.41 0.67 16 32 H 0.16 3.18 7.58 -52.48 -0.40 2.78 16 33 H 0.13 1.83 7.23 -52.49 -0.38 1.45 16 34 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.13 1.85 7.90 -52.48 -0.41 1.43 16 LS Contribution 319.58 15.07 4.82 4.82 Total: -1.00 -27.74 319.58 -7.88 -35.63 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -4.75 Total: 3.00 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -3.71 Total: -16.80 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.61 Total: -43.89 kcal Atomic # 8 Polarization: 1.81 SS G_CDS: 0.18 Total: 1.99 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.74 -7.88 -35.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068958326.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.250 kcal (2) G-P(sol) polarization free energy of solvation -27.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds