Wall clock time and date at job start Mon Mar 30 2020 01:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47356 * 2 1 4 4 C 1.36938 * 119.99877 * 84.62187 * 3 2 1 5 5 H 1.08000 * 119.99999 * 321.25837 * 4 3 2 6 6 C 1.38817 * 119.99591 * 141.25780 * 4 3 2 7 7 N 1.31614 * 120.00275 * 339.47599 * 6 4 3 8 8 Si 1.86803 * 119.99691 * 159.47948 * 6 4 3 9 9 H 1.48499 * 109.47042 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47133 * 119.99875 * 8 6 4 11 11 H 1.48510 * 109.46619 * 240.00024 * 8 6 4 12 12 C 1.46492 * 119.99964 * 264.62358 * 3 2 1 13 13 C 1.50709 * 109.47106 * 89.99841 * 12 3 2 14 14 C 1.35230 * 126.65970 * 90.00184 * 13 12 3 15 15 C 1.42277 * 103.93533 * 179.97438 * 14 13 12 16 16 C 1.48440 * 126.93956 * 180.02562 * 15 14 13 17 17 C 1.39324 * 120.11436 * 359.71802 * 16 15 14 18 18 C 1.38022 * 119.87711 * 179.77285 * 17 16 15 19 19 C 1.38325 * 120.12166 * 0.48391 * 18 17 16 20 20 C 1.38324 * 120.23383 * 359.79056 * 19 18 17 21 21 C 1.38019 * 120.12186 * 359.95439 * 20 19 18 22 22 N 1.30988 * 106.12769 * 359.97438 * 15 14 13 23 23 O 1.20911 * 111.42566 * 359.73056 * 22 15 14 24 24 H 1.08992 * 109.46746 * 60.00006 * 1 2 3 25 25 H 1.09000 * 109.47016 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46689 * 300.00426 * 1 2 3 27 27 H 1.09003 * 109.47181 * 239.99445 * 2 1 3 28 28 H 1.09003 * 109.47017 * 119.99608 * 2 1 3 29 29 H 0.97001 * 120.00186 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47146 * 209.99853 * 12 3 2 31 31 H 1.09000 * 109.47191 * 330.00191 * 12 3 2 32 32 H 1.08007 * 128.03131 * 359.97438 * 14 13 12 33 33 H 1.08000 * 120.06200 * 0.02567 * 17 16 15 34 34 H 1.08005 * 119.94361 * 180.27540 * 18 17 16 35 35 H 1.07992 * 119.88255 * 179.76764 * 19 18 17 36 36 H 1.07997 * 119.93610 * 179.97438 * 20 19 18 37 37 H 1.08004 * 120.05679 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1419 2.0638 1.1807 5 1 1.3983 1.9429 1.9546 6 6 3.2228 2.9109 1.3828 7 7 4.3133 2.7706 0.6594 8 14 3.1297 4.2502 2.6818 9 1 1.8056 4.1983 3.3522 10 1 4.2025 4.0404 3.6869 11 1 3.3066 5.5769 2.0383 12 6 2.3747 2.0321 -1.2631 13 6 1.1631 2.7269 -1.8294 14 6 0.7793 4.0018 -1.5928 15 6 -0.4098 4.1497 -2.3600 16 6 -1.2559 5.3644 -2.4688 17 6 -0.9140 6.5195 -1.7688 18 6 -1.7017 7.6477 -1.8772 19 6 -2.8343 7.6298 -2.6712 20 6 -3.1814 6.4839 -3.3638 21 6 -2.3979 5.3518 -3.2666 22 7 -0.6065 2.9978 -2.9518 23 8 0.2603 2.2031 -2.6708 24 1 -0.3632 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.0687 3.3623 0.8009 30 1 3.1630 2.7636 -1.0852 31 1 2.7277 1.2825 -1.9713 32 1 1.2631 4.7371 -0.9668 33 1 -0.0320 6.5334 -1.1457 34 1 -1.4352 8.5451 -1.3386 35 1 -3.4499 8.5136 -2.7503 36 1 -4.0669 6.4752 -3.9819 37 1 -2.6697 4.4578 -3.8082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068958326.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:16 Heat of formation + Delta-G solvation = 86.084084 kcal Electronic energy + Delta-G solvation = -20455.018896 eV Core-core repulsion = 17393.475059 eV Total energy + Delta-G solvation = -3061.543837 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.68376 -40.03144 -38.00971 -35.30265 -33.90519 -33.40567 -31.93338 -31.22129 -30.58218 -27.86748 -25.52198 -24.98427 -23.99166 -22.81866 -22.31751 -21.02595 -19.10367 -18.43734 -17.90755 -17.41726 -16.97832 -16.53704 -15.80948 -15.64747 -15.57643 -15.05376 -14.49334 -14.27445 -14.24953 -14.09953 -13.98985 -13.71104 -13.24926 -12.80915 -12.74166 -12.62224 -12.40740 -12.25820 -12.14857 -11.96593 -11.73179 -11.72097 -11.58898 -10.60667 -10.23829 -9.94796 -9.49670 -8.69924 -7.95118 -5.56818 -0.13560 0.41005 0.74261 1.42914 1.48494 1.57314 1.58956 2.27670 2.48141 2.89665 3.07441 3.19521 3.54604 3.67904 4.03341 4.05797 4.18987 4.25410 4.38712 4.41638 4.47250 4.54353 4.66573 4.77128 4.81236 4.91748 4.98618 5.04239 5.07145 5.14527 5.22788 5.39004 5.49286 5.50764 5.51120 5.56240 5.66892 5.98717 6.40407 7.05884 7.32522 7.69908 8.25805 9.05091 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017073 B = 0.006037 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.612467 B = 4636.908312 C = 5735.086830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.136 3.864 3 N -0.584 5.584 4 C -0.272 4.272 5 H 0.050 0.950 6 C -0.017 4.017 7 N -0.908 5.908 8 Si 0.949 3.051 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.280 1.280 12 C 0.218 3.782 13 C -0.011 4.011 14 C -0.239 4.239 15 C 0.050 3.950 16 C -0.042 4.042 17 C -0.110 4.110 18 C -0.119 4.119 19 C -0.106 4.106 20 C -0.120 4.120 21 C -0.110 4.110 22 N -0.391 5.391 23 O 0.080 5.920 24 H 0.032 0.968 25 H 0.071 0.929 26 H 0.031 0.969 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.259 0.741 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.163 0.837 33 H 0.124 0.876 34 H 0.154 0.846 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.485 7.588 -6.206 14.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.011 3.989 3 N -0.304 5.304 4 C -0.402 4.402 5 H 0.068 0.932 6 C -0.216 4.216 7 N -0.551 5.551 8 Si 0.776 3.224 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.206 1.206 12 C 0.089 3.911 13 C -0.077 4.077 14 C -0.262 4.262 15 C -0.107 4.107 16 C -0.043 4.043 17 C -0.129 4.129 18 C -0.137 4.137 19 C -0.125 4.125 20 C -0.137 4.137 21 C -0.130 4.130 22 N -0.099 5.099 23 O 0.018 5.982 24 H 0.051 0.949 25 H 0.090 0.910 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.124 0.876 31 H 0.084 0.916 32 H 0.181 0.819 33 H 0.142 0.858 34 H 0.172 0.828 35 H 0.178 0.822 36 H 0.172 0.828 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.213 7.083 -7.013 15.003 hybrid contribution 0.749 0.856 1.300 1.728 sum -10.464 7.939 -5.713 14.323 Atomic orbital electron populations 1.22139 0.98462 1.00887 0.99817 1.21077 0.92736 0.85140 0.99960 1.43961 1.75668 1.09412 1.01380 1.19114 1.03644 1.23082 0.94389 0.93213 1.25764 0.93764 1.02337 0.99740 1.70027 1.03220 1.38345 1.43484 0.85523 0.77614 0.79890 0.79343 1.19936 1.21346 1.20610 1.19663 0.87962 0.97478 0.86020 1.26655 0.95808 0.93957 0.91244 1.22418 0.98775 0.98386 1.06621 1.22339 0.96358 0.93920 0.98037 1.17970 0.95272 0.90400 1.00686 1.21355 1.00575 0.92443 0.98564 1.21443 0.94960 0.98001 0.99253 1.21694 0.96577 0.98967 0.95215 1.21434 1.00077 0.92181 1.00040 1.21317 0.93930 0.99732 0.97991 1.73929 1.11624 1.01411 1.22929 1.84702 1.27392 1.36472 1.49632 0.94866 0.91010 0.95000 0.92467 0.93528 0.93164 0.87584 0.91647 0.81931 0.85830 0.82824 0.82151 0.82816 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.75 10.21 71.98 0.73 -5.01 16 2 C 0.14 5.55 6.44 86.38 0.56 6.11 16 3 N -0.58 -27.90 2.41 -706.32 -1.70 -29.61 16 4 C -0.27 -14.25 9.45 84.03 0.79 -13.45 16 5 H 0.05 2.69 7.91 -2.91 -0.02 2.66 16 6 C -0.02 -0.89 4.97 84.86 0.42 -0.47 16 7 N -0.91 -48.87 11.50 21.65 0.25 -48.62 16 8 Si 0.95 42.02 29.60 68.60 2.03 44.05 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 10 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 12 C 0.22 9.80 5.89 85.64 0.50 10.30 16 13 C -0.01 -0.46 6.87 24.99 0.17 -0.29 16 14 C -0.24 -9.93 10.45 22.58 0.24 -9.70 16 15 C 0.05 1.97 7.06 42.99 0.30 2.27 16 16 C -0.04 -1.40 5.88 -20.04 -0.12 -1.52 16 17 C -0.11 -3.12 9.60 22.48 0.22 -2.90 16 18 C -0.12 -2.50 10.03 22.24 0.22 -2.27 16 19 C -0.11 -1.91 10.04 22.31 0.22 -1.69 16 20 C -0.12 -2.47 10.03 22.24 0.22 -2.25 16 21 C -0.11 -3.13 9.70 22.48 0.22 -2.91 16 22 N -0.39 -16.06 11.82 -49.44 -0.58 -16.64 16 23 O 0.08 3.35 10.42 71.40 0.74 4.10 16 24 H 0.03 1.30 7.18 -2.39 -0.02 1.28 16 25 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 2.12 7.83 -2.39 -0.02 2.11 16 28 H 0.05 1.92 8.08 -2.39 -0.02 1.91 16 29 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 30 H 0.11 5.29 5.57 -2.39 -0.01 5.27 16 31 H 0.07 2.71 7.86 -2.39 -0.02 2.69 16 32 H 0.16 6.60 7.58 -2.91 -0.02 6.58 16 33 H 0.12 3.51 7.23 -2.91 -0.02 3.49 16 34 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 35 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 36 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 37 H 0.12 3.44 7.90 -2.91 -0.02 3.41 16 Total: -1.00 -60.22 319.58 6.51 -53.71 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 1.06 Total: 16.79 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 4.71 Total: -23.77 kcal Atomic # 7 Polarization: -92.84 SS G_CDS: -2.04 Total: -94.88 kcal Atomic # 8 Polarization: 3.35 SS G_CDS: 0.74 Total: 4.10 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -60.22 6.51 -53.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068958326.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.789 kcal (2) G-P(sol) polarization free energy of solvation -60.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds