Wall clock time and date at job start Mon Mar 30 2020 01:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46855 * 2 1 4 4 O 1.42898 * 109.47149 * 119.99651 * 2 1 3 5 5 C 1.35912 * 116.99581 * 84.76806 * 4 2 1 6 6 C 1.38854 * 119.98907 * 354.65251 * 5 4 2 7 7 C 1.38228 * 120.22058 * 179.97438 * 6 5 4 8 8 C 1.38030 * 120.19710 * 359.72570 * 7 6 5 9 9 C 1.39502 * 119.97332 * 0.52877 * 8 7 6 10 10 C 1.47990 * 120.11263 * 179.74391 * 9 8 7 11 11 C 1.36387 * 126.47985 * 359.72114 * 10 9 8 12 12 C 1.41915 * 105.46286 * 179.97438 * 11 10 9 13 13 C 1.41471 * 126.43990 * 179.74105 * 12 11 10 14 14 H 1.08001 * 119.99834 * 359.97438 * 13 12 11 15 15 C 1.39815 * 120.00027 * 180.02562 * 13 12 11 16 16 N 1.30908 * 120.00050 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99896 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47085 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47372 * 119.99962 * 17 15 13 20 20 H 1.48498 * 109.47201 * 239.99966 * 17 15 13 21 21 N 1.32829 * 107.12553 * 0.02562 * 12 11 10 22 22 N 1.28456 * 110.24434 * 359.97438 * 21 12 11 23 23 H 0.97000 * 124.92987 * 179.97438 * 22 21 12 24 24 C 1.38462 * 119.98650 * 174.62845 * 5 4 2 25 25 H 1.08997 * 109.47286 * 299.99962 * 1 2 3 26 26 H 1.08999 * 109.46871 * 59.99830 * 1 2 3 27 27 H 1.09000 * 109.46766 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47286 * 240.00038 * 2 1 3 29 29 H 1.09004 * 109.47009 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47240 * 300.00242 * 3 2 1 31 31 H 1.09002 * 109.47024 * 60.00398 * 3 2 1 32 32 H 1.07998 * 119.88495 * 0.02562 * 6 5 4 33 33 H 1.08001 * 119.90286 * 180.02562 * 7 6 5 34 34 H 1.08004 * 120.01254 * 180.29596 * 8 7 6 35 35 H 1.07998 * 127.27343 * 0.02562 * 11 10 9 36 36 H 0.96995 * 120.00247 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.09575 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1079 -2.0272 1.0995 6 6 1.6521 -2.7023 -0.0250 7 6 1.7535 -4.0789 -0.0988 8 6 2.3137 -4.7906 0.9428 9 6 2.7694 -4.1211 2.0787 10 6 3.3654 -4.8816 3.1997 11 6 3.5291 -6.2340 3.2656 12 6 4.1387 -6.4804 4.5233 13 6 4.5016 -7.7430 5.0482 14 1 4.3174 -8.6395 4.4747 15 6 5.0976 -7.8305 6.3099 16 7 5.3195 -6.7441 7.0058 17 14 5.5761 -9.4977 7.0033 18 1 5.2202 -10.5599 6.0285 19 1 7.0391 -9.5273 7.2562 20 1 4.8488 -9.7314 8.2767 21 7 4.2989 -5.3034 5.1176 22 7 3.8561 -4.3614 4.3649 23 1 3.8676 -3.4181 4.5907 24 6 2.6662 -2.7325 2.1521 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.2177 -2.1499 -0.8451 33 1 1.3977 -4.5988 -0.9760 34 1 2.3958 -5.8657 0.8800 35 1 3.2539 -6.9634 2.5182 36 1 5.7326 -6.8047 7.8812 37 1 3.0218 -2.2085 3.0270 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072220390.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:31 Heat of formation + Delta-G solvation = 45.347867 kcal Electronic energy + Delta-G solvation = -19646.366484 eV Core-core repulsion = 16583.056192 eV Total energy + Delta-G solvation = -3063.310291 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.58894 -39.98387 -37.46228 -33.41003 -33.33574 -31.61218 -30.35534 -29.48542 -27.85972 -27.26271 -25.56722 -23.34500 -22.34141 -21.21803 -19.86144 -19.44453 -18.26384 -16.37158 -16.23158 -15.97522 -15.56128 -15.37840 -14.58625 -14.06245 -13.88959 -13.69204 -13.46223 -13.01917 -12.86633 -12.60807 -12.48342 -12.30646 -12.28260 -11.92385 -11.40562 -11.22026 -11.10812 -10.84510 -10.81379 -10.64548 -10.39898 -9.86144 -9.36453 -9.00949 -8.50598 -8.11661 -7.63533 -7.04246 -6.27033 -4.14398 1.33130 1.66089 3.14405 3.16847 3.26997 3.31804 3.39302 4.21637 4.28639 4.42056 4.42538 4.53553 4.66502 4.81161 4.96922 5.04474 5.25177 5.29044 5.43947 5.45822 5.49956 5.58270 5.66258 5.70302 5.80353 5.85148 5.90838 6.13083 6.44540 6.56737 6.59774 6.71380 6.92408 7.19301 7.31169 7.48480 7.54079 7.75725 8.38259 8.77261 8.98468 9.27256 10.19718 10.71331 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.045460 B = 0.003385 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.771935 B = 8268.699698 C = 8754.891008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.077 3.923 3 C -0.149 4.149 4 O -0.313 6.313 5 C 0.137 3.863 6 C -0.231 4.231 7 C -0.074 4.074 8 C -0.148 4.148 9 C 0.060 3.940 10 C 0.001 3.999 11 C -0.254 4.254 12 C 0.187 3.813 13 C -0.451 4.451 14 H 0.080 0.920 15 C 0.071 3.929 16 N -0.784 5.784 17 Si 0.905 3.095 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.279 1.279 21 N -0.306 5.306 22 N -0.426 5.426 23 H 0.418 0.582 24 C -0.167 4.167 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.267 0.733 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.612 11.711 -14.128 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.021 3.979 3 C -0.206 4.206 4 O -0.228 6.228 5 C 0.092 3.908 6 C -0.250 4.250 7 C -0.093 4.093 8 C -0.168 4.168 9 C 0.058 3.942 10 C -0.124 4.124 11 C -0.286 4.286 12 C 0.040 3.960 13 C -0.489 4.489 14 H 0.098 0.902 15 C -0.146 4.146 16 N -0.413 5.413 17 Si 0.731 3.269 18 H -0.188 1.188 19 H -0.204 1.204 20 H -0.204 1.204 21 N -0.139 5.139 22 N -0.134 5.134 23 H 0.258 0.742 24 C -0.187 4.187 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.078 0.922 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.060 12.421 -12.754 19.152 hybrid contribution -0.182 -0.664 -0.459 0.828 sum -7.242 11.757 -13.213 19.112 Atomic orbital electron populations 1.22390 0.95242 1.03246 1.02906 1.22384 0.94239 0.93566 0.87746 1.21853 1.02169 0.93679 1.02876 1.86112 1.81366 1.16730 1.38563 1.18735 0.95579 0.82106 0.94396 1.21135 1.09342 0.95580 0.98956 1.20790 0.97234 0.93152 0.98074 1.21064 1.01972 1.00448 0.93277 1.17998 0.93369 0.90797 0.92083 1.19547 1.09050 0.93440 0.90395 1.21612 1.13098 0.92637 1.01277 1.19273 0.95152 0.92295 0.89288 1.18570 1.38082 0.90914 1.01383 0.90190 1.25749 0.94674 0.97354 0.96850 1.69971 1.32669 1.28210 1.10439 0.86325 0.78387 0.83095 0.79137 1.18824 1.20425 1.20432 1.74712 1.24797 0.96095 1.18322 1.43776 1.48177 1.09118 1.12305 0.74164 1.20291 1.06367 0.92960 0.99093 0.91489 0.91239 0.91627 0.90912 0.91644 0.90690 0.91508 0.85865 0.85952 0.85336 0.85460 0.92201 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 9.17 37.16 0.34 -1.16 16 2 C 0.08 0.74 2.85 -26.73 -0.08 0.67 16 3 C -0.15 -1.14 9.56 37.16 0.36 -0.79 16 4 O -0.31 -4.23 9.80 -19.46 -0.19 -4.42 16 5 C 0.14 2.02 6.59 -39.27 -0.26 1.76 16 6 C -0.23 -2.99 8.23 -39.36 -0.32 -3.31 16 7 C -0.07 -0.98 10.03 -39.66 -0.40 -1.38 16 8 C -0.15 -2.36 9.57 -39.19 -0.38 -2.73 16 9 C 0.06 1.09 5.87 -104.98 -0.62 0.48 16 10 C 0.00 0.03 6.97 -82.36 -0.57 -0.55 16 11 C -0.25 -6.19 10.33 -38.84 -0.40 -6.59 16 12 C 0.19 5.28 6.77 -84.80 -0.57 4.71 16 13 C -0.45 -12.79 9.41 -37.76 -0.36 -13.14 16 14 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 15 C 0.07 1.96 5.49 -17.36 -0.10 1.86 16 16 N -0.78 -22.56 11.96 55.54 0.66 -21.90 16 17 Si 0.90 20.18 29.56 -169.99 -5.02 15.15 16 18 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 N -0.31 -8.58 10.47 32.29 0.34 -8.24 16 22 N -0.43 -9.96 6.81 33.32 0.23 -9.73 16 23 H 0.42 8.26 8.07 -190.45 -1.54 6.73 16 24 C -0.17 -2.79 9.65 -39.05 -0.38 -3.16 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.60 6.89 -51.93 -0.36 0.24 16 28 H 0.07 0.65 6.31 -51.93 -0.33 0.32 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.12 1.27 5.40 -52.49 -0.28 0.99 16 33 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.13 1.95 7.07 -52.48 -0.37 1.58 16 35 H 0.13 2.76 7.37 -52.49 -0.39 2.38 16 36 H 0.27 7.07 8.30 -40.82 -0.34 6.73 16 37 H 0.12 1.95 7.18 -52.48 -0.38 1.57 16 LS Contribution 313.61 15.07 4.73 4.73 Total: -1.00 -32.40 313.61 -8.71 -41.11 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.72 Total: 6.64 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -3.73 Total: -23.34 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 1.23 Total: -39.87 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.19 Total: -4.42 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.40 -8.71 -41.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072220390.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.457 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds