Wall clock time and date at job start Mon Mar 30 2020 01:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46855 * 2 1 4 4 O 1.42898 * 109.47149 * 119.99651 * 2 1 3 5 5 C 1.35912 * 116.99581 * 84.76806 * 4 2 1 6 6 C 1.38854 * 119.98907 * 354.65251 * 5 4 2 7 7 C 1.38228 * 120.22058 * 179.97438 * 6 5 4 8 8 C 1.38030 * 120.19710 * 359.72570 * 7 6 5 9 9 C 1.39502 * 119.97332 * 0.52877 * 8 7 6 10 10 C 1.47990 * 120.11263 * 179.74391 * 9 8 7 11 11 C 1.36387 * 126.47985 * 359.72114 * 10 9 8 12 12 C 1.41915 * 105.46286 * 179.97438 * 11 10 9 13 13 C 1.41471 * 126.43990 * 179.74105 * 12 11 10 14 14 H 1.08001 * 119.99834 * 359.97438 * 13 12 11 15 15 C 1.39815 * 120.00027 * 180.02562 * 13 12 11 16 16 N 1.30908 * 120.00050 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99896 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47085 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47372 * 119.99962 * 17 15 13 20 20 H 1.48498 * 109.47201 * 239.99966 * 17 15 13 21 21 N 1.32829 * 107.12553 * 0.02562 * 12 11 10 22 22 N 1.28456 * 110.24434 * 359.97438 * 21 12 11 23 23 H 0.97000 * 124.92987 * 179.97438 * 22 21 12 24 24 C 1.38462 * 119.98650 * 174.62845 * 5 4 2 25 25 H 1.08997 * 109.47286 * 299.99962 * 1 2 3 26 26 H 1.08999 * 109.46871 * 59.99830 * 1 2 3 27 27 H 1.09000 * 109.46766 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47286 * 240.00038 * 2 1 3 29 29 H 1.09004 * 109.47009 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47240 * 300.00242 * 3 2 1 31 31 H 1.09002 * 109.47024 * 60.00398 * 3 2 1 32 32 H 1.07998 * 119.88495 * 0.02562 * 6 5 4 33 33 H 1.08001 * 119.90286 * 180.02562 * 7 6 5 34 34 H 1.08004 * 120.01254 * 180.29596 * 8 7 6 35 35 H 1.07998 * 127.27343 * 0.02562 * 11 10 9 36 36 H 0.96995 * 120.00247 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.09575 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1079 -2.0272 1.0995 6 6 1.6521 -2.7023 -0.0250 7 6 1.7535 -4.0789 -0.0988 8 6 2.3137 -4.7906 0.9428 9 6 2.7694 -4.1211 2.0787 10 6 3.3654 -4.8816 3.1997 11 6 3.5291 -6.2340 3.2656 12 6 4.1387 -6.4804 4.5233 13 6 4.5016 -7.7430 5.0482 14 1 4.3174 -8.6395 4.4747 15 6 5.0976 -7.8305 6.3099 16 7 5.3195 -6.7441 7.0058 17 14 5.5761 -9.4977 7.0033 18 1 5.2202 -10.5599 6.0285 19 1 7.0391 -9.5273 7.2562 20 1 4.8488 -9.7314 8.2767 21 7 4.2989 -5.3034 5.1176 22 7 3.8561 -4.3614 4.3649 23 1 3.8676 -3.4181 4.5907 24 6 2.6662 -2.7325 2.1521 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.2177 -2.1499 -0.8451 33 1 1.3977 -4.5988 -0.9760 34 1 2.3958 -5.8657 0.8800 35 1 3.2539 -6.9634 2.5182 36 1 5.7326 -6.8047 7.8812 37 1 3.0218 -2.2085 3.0270 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072220390.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:30 Heat of formation + Delta-G solvation = 25.408171 kcal Electronic energy + Delta-G solvation = -19647.231134 eV Core-core repulsion = 16583.056192 eV Total energy + Delta-G solvation = -3064.174942 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.36790 -41.12468 -38.59425 -35.36407 -34.19286 -33.02255 -32.19412 -30.79417 -29.26352 -28.07960 -27.60306 -24.51834 -23.56894 -22.44983 -21.66165 -20.98439 -19.50478 -18.33200 -17.68670 -17.10431 -16.66564 -16.43592 -16.31299 -15.55477 -15.19654 -14.96268 -14.62389 -14.53435 -14.16389 -13.90768 -13.66374 -13.31905 -13.13580 -12.91724 -12.83172 -12.68534 -12.54574 -12.34736 -12.18267 -11.76010 -11.70255 -11.53513 -11.24430 -10.48199 -10.44979 -9.63208 -9.31421 -8.72216 -8.29780 -6.26501 0.02790 0.48948 1.41274 1.44560 1.60665 1.82028 2.21514 2.35055 2.37466 2.71498 2.96373 3.61287 3.78524 3.81229 3.91459 4.02370 4.11229 4.25292 4.33442 4.35309 4.54799 4.69715 4.71370 4.83284 4.86367 4.89609 4.94607 5.18634 5.20538 5.27492 5.29400 5.34943 5.43423 5.50456 5.72288 5.77937 5.87391 6.37992 6.51034 6.88350 6.95019 7.22260 8.23545 8.70731 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.045460 B = 0.003385 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.771935 B = 8268.699698 C = 8754.891008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.065 3.935 3 C -0.147 4.147 4 O -0.330 6.330 5 C 0.133 3.867 6 C -0.211 4.211 7 C -0.065 4.065 8 C -0.152 4.152 9 C 0.025 3.975 10 C 0.030 3.970 11 C -0.284 4.284 12 C 0.152 3.848 13 C -0.485 4.485 14 H 0.085 0.915 15 C 0.020 3.980 16 N -0.826 5.826 17 Si 0.988 3.012 18 H -0.253 1.253 19 H -0.272 1.272 20 H -0.272 1.272 21 N -0.353 5.353 22 N -0.428 5.428 23 H 0.429 0.571 24 C -0.178 4.178 25 H 0.058 0.942 26 H 0.096 0.904 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.132 0.868 35 H 0.146 0.854 36 H 0.272 0.728 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.921 12.260 -16.952 22.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.010 3.990 3 C -0.204 4.204 4 O -0.245 6.245 5 C 0.088 3.912 6 C -0.230 4.230 7 C -0.082 4.082 8 C -0.172 4.172 9 C 0.023 3.977 10 C -0.097 4.097 11 C -0.314 4.314 12 C 0.004 3.996 13 C -0.524 4.524 14 H 0.103 0.897 15 C -0.194 4.194 16 N -0.456 5.456 17 Si 0.809 3.191 18 H -0.177 1.177 19 H -0.197 1.197 20 H -0.197 1.197 21 N -0.187 5.187 22 N -0.137 5.137 23 H 0.272 0.728 24 C -0.198 4.198 25 H 0.077 0.923 26 H 0.115 0.885 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.176 0.824 33 H 0.181 0.819 34 H 0.150 0.850 35 H 0.164 0.836 36 H 0.081 0.919 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.383 13.006 -15.602 21.974 hybrid contribution 0.091 -0.563 0.183 0.599 sum -8.292 12.443 -15.419 21.479 Atomic orbital electron populations 1.22386 0.94066 1.03109 1.03939 1.22788 0.95236 0.94215 0.86776 1.21897 1.01810 0.92688 1.04019 1.86116 1.81497 1.16033 1.40857 1.18784 0.95200 0.82971 0.94294 1.21576 1.06916 0.95716 0.98764 1.21203 0.95535 0.93288 0.98223 1.21255 1.01806 1.00930 0.93190 1.17927 0.96280 0.91400 0.92071 1.20006 1.06124 0.93201 0.90353 1.21817 1.14532 0.94149 1.00919 1.19734 0.96192 0.92648 0.91059 1.18986 1.39392 0.91431 1.02578 0.89668 1.26754 0.94068 1.01814 0.96766 1.70110 1.33630 1.30880 1.10953 0.85075 0.78076 0.77593 0.78325 1.17673 1.19716 1.19747 1.74579 1.26987 0.96900 1.20203 1.43733 1.48104 1.09261 1.12592 0.72845 1.20319 1.06902 0.92596 0.99957 0.92280 0.88480 0.92286 0.89627 0.92286 0.87890 0.92033 0.82396 0.81924 0.85033 0.83622 0.91857 0.86577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 9.17 71.98 0.66 -1.68 16 2 C 0.07 1.05 2.85 30.60 0.09 1.13 16 3 C -0.15 -1.86 9.56 71.98 0.69 -1.17 16 4 O -0.33 -8.30 9.80 -92.55 -0.91 -9.20 16 5 C 0.13 3.64 6.59 22.47 0.15 3.79 16 6 C -0.21 -4.61 8.23 22.42 0.18 -4.43 16 7 C -0.06 -1.45 10.03 22.22 0.22 -1.23 16 8 C -0.15 -4.57 9.57 22.53 0.22 -4.36 16 9 C 0.03 0.92 5.87 -20.10 -0.12 0.80 16 10 C 0.03 1.37 6.97 40.54 0.28 1.65 16 11 C -0.28 -14.32 10.33 22.75 0.23 -14.09 16 12 C 0.15 9.01 6.77 40.70 0.28 9.29 16 13 C -0.49 -28.64 9.41 23.45 0.22 -28.42 16 14 H 0.09 4.70 7.84 -2.91 -0.02 4.68 16 15 C 0.02 1.10 5.49 85.21 0.47 1.57 16 16 N -0.83 -49.45 11.96 21.81 0.26 -49.18 16 17 Si 0.99 42.36 29.56 68.60 2.03 44.38 16 18 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 21 N -0.35 -20.87 10.47 -51.75 -0.54 -21.41 16 22 N -0.43 -21.00 6.81 -48.50 -0.33 -21.33 16 23 H 0.43 17.97 8.07 -220.00 -1.78 16.19 16 24 C -0.18 -5.88 9.65 22.61 0.22 -5.66 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.86 6.89 -2.39 -0.02 0.84 16 28 H 0.09 1.15 6.31 -2.39 -0.02 1.14 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.16 2.37 5.40 -2.91 -0.02 2.36 16 33 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 34 H 0.13 3.81 7.07 -2.91 -0.02 3.79 16 35 H 0.15 6.50 7.37 -2.91 -0.02 6.48 16 36 H 0.27 14.88 8.30 -92.71 -0.77 14.11 16 37 H 0.12 3.83 7.18 -2.91 -0.02 3.80 16 Total: -1.00 -74.18 313.61 3.62 -70.56 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: -0.68 Total: 28.99 kcal Atomic # 6 Polarization: -46.59 SS G_CDS: 3.79 Total: -42.80 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -0.61 Total: -91.93 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.91 Total: -9.20 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -74.18 3.62 -70.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072220390.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.964 kcal (2) G-P(sol) polarization free energy of solvation -74.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds