Wall clock time and date at job start Mon Mar 30 2020 01:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46694 * 2 1 4 4 O 1.42902 * 109.46910 * 179.97438 * 3 2 1 5 5 C 1.35907 * 116.99891 * 180.02562 * 4 3 2 6 6 C 1.38855 * 119.98632 * 0.02562 * 5 4 3 7 7 C 1.38231 * 120.21810 * 180.02562 * 6 5 4 8 8 C 1.38033 * 120.20047 * 359.72075 * 7 6 5 9 9 C 1.39502 * 119.96507 * 0.53502 * 8 7 6 10 10 C 1.48008 * 120.10490 * 179.74523 * 9 8 7 11 11 C 1.36379 * 126.48133 * 359.71924 * 10 9 8 12 12 C 1.41915 * 105.46183 * 180.02562 * 11 10 9 13 13 C 1.41469 * 126.43994 * 179.74040 * 12 11 10 14 14 H 1.08003 * 119.99668 * 0.02562 * 13 12 11 15 15 C 1.39813 * 120.00027 * 179.97438 * 13 12 11 16 16 N 1.30909 * 120.00209 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99886 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47229 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47537 * 120.00352 * 17 15 13 20 20 H 1.48504 * 109.47185 * 240.00435 * 17 15 13 21 21 N 1.32828 * 107.12458 * 0.02562 * 12 11 10 22 22 N 1.28451 * 110.24436 * 359.97438 * 21 12 11 23 23 H 0.97008 * 124.93053 * 179.97438 * 22 21 12 24 24 C 1.38463 * 119.98872 * 180.02562 * 5 4 3 25 25 H 1.09000 * 109.46646 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47123 * 299.99539 * 1 2 3 27 27 H 1.08996 * 109.47318 * 59.99999 * 1 2 3 28 28 H 1.09002 * 109.46967 * 240.00736 * 2 1 3 29 29 H 1.08996 * 109.47318 * 120.00000 * 2 1 3 30 30 H 1.08997 * 109.47455 * 60.00349 * 3 2 1 31 31 H 1.08999 * 109.47731 * 300.00055 * 3 2 1 32 32 H 1.07995 * 119.89245 * 0.02562 * 6 5 4 33 33 H 1.08002 * 119.89914 * 180.02562 * 7 6 5 34 34 H 1.08003 * 120.01685 * 180.30103 * 8 7 6 35 35 H 1.08000 * 127.27347 * 0.02562 * 11 10 9 36 36 H 0.96994 * 120.00405 * 180.02562 * 16 15 13 37 37 H 1.08003 * 120.09511 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4426 0.0006 5 6 4.0859 2.6536 0.0012 6 6 3.3293 3.8179 0.0018 7 6 3.9518 5.0521 0.0019 8 6 5.3296 5.1348 0.0072 9 6 6.0976 3.9702 0.0013 10 6 7.5752 4.0553 0.0013 11 6 8.3217 5.1967 0.0014 12 6 9.6735 4.7647 0.0007 13 6 10.8203 5.5930 -0.0046 14 1 10.7104 6.6674 -0.0083 15 6 12.0960 5.0207 -0.0040 16 7 12.2292 3.7185 0.0010 17 14 13.6102 6.1144 -0.0103 18 1 13.1918 7.5393 -0.0161 19 1 14.4231 5.8416 1.2021 20 1 14.4198 5.8320 -1.2228 21 7 9.6596 3.4365 -0.0002 22 7 8.4499 3.0046 0.0003 23 1 8.1942 2.0689 -0.0006 24 6 5.4686 2.7258 0.0013 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 2.2509 3.7590 0.0022 33 1 3.3582 5.9544 0.0027 34 1 5.8129 6.1007 0.0122 35 1 7.9604 6.2145 0.0018 36 1 13.1141 3.3214 0.0018 37 1 6.0582 1.8209 0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072220391.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:33 Heat of formation + Delta-G solvation = 20.788332 kcal Electronic energy + Delta-G solvation = -19355.063395 eV Core-core repulsion = 16290.688122 eV Total energy + Delta-G solvation = -3064.375273 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.36779 -40.98179 -38.50524 -35.36708 -34.83171 -33.01092 -32.22710 -31.09219 -29.17258 -27.70449 -27.32451 -24.16636 -23.39996 -22.42805 -21.69491 -21.17602 -19.50223 -18.33419 -17.50734 -17.22615 -17.09732 -16.67139 -16.42099 -15.58498 -15.10402 -15.03715 -14.90603 -14.57535 -14.28681 -13.90958 -13.55372 -13.46690 -13.01760 -12.89225 -12.78259 -12.55737 -12.33212 -12.28799 -12.19776 -11.75894 -11.66523 -11.53806 -11.24741 -10.48308 -10.46865 -9.63290 -9.32834 -8.73510 -8.29860 -6.26468 0.02330 0.47729 1.41226 1.44530 1.60645 1.81879 2.17847 2.34982 2.37300 2.71384 2.95718 3.61238 3.75708 3.83866 3.96350 4.01697 4.19371 4.28167 4.30201 4.36638 4.53533 4.56980 4.61133 4.71596 4.82240 4.91314 5.12787 5.18564 5.18722 5.27503 5.29571 5.36282 5.43350 5.49470 5.71444 5.76799 5.86763 6.38010 6.46478 6.88333 6.94955 7.22204 8.23478 8.70686 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.047268 B = 0.003150 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.219757 B = 8887.054438 C = 9453.517282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.050 3.950 4 O -0.335 6.335 5 C 0.129 3.871 6 C -0.210 4.210 7 C -0.065 4.065 8 C -0.151 4.151 9 C 0.025 3.975 10 C 0.030 3.970 11 C -0.283 4.283 12 C 0.151 3.849 13 C -0.484 4.484 14 H 0.085 0.915 15 C 0.019 3.981 16 N -0.826 5.826 17 Si 0.988 3.012 18 H -0.253 1.253 19 H -0.272 1.272 20 H -0.272 1.272 21 N -0.353 5.353 22 N -0.428 5.428 23 H 0.430 0.570 24 C -0.176 4.176 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.132 0.868 35 H 0.146 0.854 36 H 0.272 0.728 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.904 -2.425 0.003 23.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.024 4.024 4 O -0.249 6.249 5 C 0.084 3.916 6 C -0.229 4.229 7 C -0.082 4.082 8 C -0.171 4.171 9 C 0.023 3.977 10 C -0.097 4.097 11 C -0.314 4.314 12 C 0.003 3.997 13 C -0.523 4.523 14 H 0.104 0.896 15 C -0.195 4.195 16 N -0.456 5.456 17 Si 0.809 3.191 18 H -0.177 1.177 19 H -0.197 1.197 20 H -0.198 1.198 21 N -0.187 5.187 22 N -0.137 5.137 23 H 0.272 0.728 24 C -0.196 4.196 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.176 0.824 33 H 0.181 0.819 34 H 0.150 0.850 35 H 0.164 0.836 36 H 0.081 0.919 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -21.971 -3.761 0.002 22.290 hybrid contribution 0.414 0.408 0.000 0.581 sum -21.557 -3.353 0.002 21.816 Atomic orbital electron populations 1.21672 0.92508 1.03192 1.02857 1.21518 0.97386 0.94026 1.03217 1.23171 0.76713 0.99938 1.02604 1.86037 1.23292 1.26910 1.88701 1.18794 0.91302 0.85189 0.96303 1.21559 1.01216 0.91458 1.08638 1.21209 0.93238 0.98443 0.95348 1.21269 0.94493 0.97426 1.03911 1.17931 0.88058 0.93898 0.97821 1.20001 0.90345 0.89029 1.10315 1.21820 0.92921 0.97766 1.18898 1.19741 0.93466 0.89181 0.97301 1.18982 0.89459 0.93614 1.50251 0.89647 1.26762 1.03414 0.96566 0.92726 1.70109 1.24705 1.12412 1.38381 0.85073 0.76678 0.79141 0.78165 1.17653 1.19733 1.19751 1.74577 0.99309 1.14032 1.30733 1.43734 1.03495 1.08083 1.58365 0.72827 1.20313 0.92692 0.97080 1.09535 0.91106 0.91681 0.91686 0.91430 0.91430 0.90751 0.90740 0.82410 0.81854 0.84964 0.83589 0.91853 0.86478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 71.98 0.71 -0.54 16 2 C -0.12 -1.66 6.30 30.59 0.19 -1.47 16 3 C 0.05 0.80 4.74 71.98 0.34 1.14 16 4 O -0.33 -8.41 10.13 -92.51 -0.94 -9.34 16 5 C 0.13 3.55 6.68 22.47 0.15 3.70 16 6 C -0.21 -4.57 9.03 22.42 0.20 -4.37 16 7 C -0.06 -1.44 10.03 22.22 0.22 -1.22 16 8 C -0.15 -4.53 9.57 22.53 0.22 -4.31 16 9 C 0.02 0.90 5.87 -20.09 -0.12 0.79 16 10 C 0.03 1.36 6.97 40.54 0.28 1.64 16 11 C -0.28 -14.28 10.33 22.75 0.23 -14.05 16 12 C 0.15 8.97 6.77 40.70 0.28 9.24 16 13 C -0.48 -28.55 9.41 23.45 0.22 -28.33 16 14 H 0.09 4.70 7.84 -2.91 -0.02 4.68 16 15 C 0.02 1.06 5.49 85.21 0.47 1.53 16 16 N -0.83 -49.46 11.96 21.80 0.26 -49.20 16 17 Si 0.99 42.34 29.56 68.60 2.03 44.36 16 18 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 21 N -0.35 -20.83 10.47 -51.75 -0.54 -21.37 16 22 N -0.43 -20.94 6.81 -48.50 -0.33 -21.27 16 23 H 0.43 17.90 8.07 -219.99 -1.78 16.13 16 24 C -0.18 -5.80 9.65 22.61 0.22 -5.59 16 25 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 0.99 7.65 -2.39 -0.02 0.97 16 31 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 32 H 0.16 2.30 6.28 -2.91 -0.02 2.28 16 33 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 34 H 0.13 3.81 7.07 -2.91 -0.02 3.79 16 35 H 0.15 6.49 7.37 -2.91 -0.02 6.47 16 36 H 0.27 14.88 8.30 -92.71 -0.77 14.11 16 37 H 0.12 3.83 7.18 -2.91 -0.02 3.81 16 Total: -1.00 -73.82 317.20 3.42 -70.41 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.68 Total: 28.24 kcal Atomic # 6 Polarization: -45.45 SS G_CDS: 3.62 Total: -41.83 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -0.61 Total: -91.84 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.94 Total: -9.34 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -73.82 3.42 -70.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072220391.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.196 kcal (2) G-P(sol) polarization free energy of solvation -73.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds