Wall clock time and date at job start Mon Mar 30 2020 01:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46504 * 119.99854 * 2 1 4 4 C 1.50693 * 109.46968 * 269.99747 * 3 2 1 5 5 H 1.07995 * 120.00310 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99844 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00073 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99652 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.46865 * 90.00847 * 8 6 4 10 10 H 1.48501 * 109.46528 * 209.99939 * 8 6 4 11 11 H 1.48490 * 109.47639 * 330.00378 * 8 6 4 12 12 C 1.34776 * 120.00210 * 179.97438 * 2 1 3 13 13 O 1.21669 * 120.00155 * 184.54329 * 12 2 1 14 14 C 1.46916 * 119.99844 * 4.54162 * 12 2 1 15 15 C 1.36366 * 126.77014 * 322.81796 * 14 12 2 16 16 N 1.35476 * 109.76847 * 179.97438 * 15 14 12 17 17 C 1.46496 * 124.78252 * 179.97438 * 16 15 14 18 18 C 1.37960 * 110.42539 * 0.23907 * 16 15 14 19 19 C 1.39125 * 133.18618 * 180.38881 * 18 16 15 20 20 C 1.37758 * 119.92745 * 179.61996 * 19 18 16 21 21 C 1.38754 * 120.63995 * 359.78041 * 20 19 18 22 22 C 1.37753 * 120.29636 * 359.97438 * 21 20 19 23 23 C 1.39270 * 119.67415 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.47433 * 264.81985 * 1 2 3 25 25 H 1.08997 * 109.47443 * 24.82153 * 1 2 3 26 26 H 1.09003 * 109.47160 * 144.82435 * 1 2 3 27 27 H 1.09008 * 109.46949 * 30.00042 * 3 2 1 28 28 H 1.09001 * 109.47337 * 149.99519 * 3 2 1 29 29 H 0.96998 * 119.99856 * 179.97438 * 7 6 4 30 30 H 1.07999 * 125.11345 * 359.95694 * 15 14 12 31 31 H 1.08999 * 109.46966 * 90.02898 * 17 16 15 32 32 H 1.08997 * 109.47864 * 330.02154 * 17 16 15 33 33 H 1.09002 * 109.46919 * 210.02058 * 17 16 15 34 34 H 1.08004 * 120.03036 * 359.35761 * 19 18 16 35 35 H 1.08010 * 119.68165 * 179.76653 * 20 19 18 36 36 H 1.08001 * 119.85300 * 179.97438 * 21 20 19 37 37 H 1.08005 * 120.16222 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0974 1.0962 -2.2416 6 6 3.1260 2.8780 -1.6727 7 7 3.5532 3.6182 -0.6731 8 14 3.4367 3.4175 -3.4340 9 1 2.3063 4.2603 -3.9002 10 1 4.6967 4.2009 -3.4966 11 1 3.5540 2.2207 -4.3050 12 6 2.1389 -1.1672 0.0005 13 8 3.3527 -1.1688 0.0840 14 6 1.4078 -2.4376 -0.0997 15 6 0.2038 -2.7334 0.4681 16 7 -0.1519 -4.0022 0.1532 17 6 -1.3864 -4.6574 0.5923 18 6 0.8152 -4.5919 -0.6343 19 6 0.9305 -5.8489 -1.2194 20 6 2.0387 -6.1547 -1.9783 21 6 3.0443 -5.2181 -2.1709 22 6 2.9460 -3.9665 -1.6040 23 6 1.8306 -3.6434 -0.8352 24 1 -0.3634 -0.0928 1.0235 25 1 -0.3634 0.9327 -0.4314 26 1 -0.3634 -0.8400 -0.5920 27 1 1.6083 2.0284 0.5139 28 1 3.1499 1.1385 0.5139 29 1 4.0300 4.4441 -0.8504 30 1 -0.3785 -2.0580 1.0774 31 1 -2.1737 -4.4769 -0.1396 32 1 -1.6887 -4.2533 1.5584 33 1 -1.2154 -5.7300 0.6846 34 1 0.1539 -6.5855 -1.0752 35 1 2.1259 -7.1330 -2.4276 36 1 3.9078 -5.4716 -2.7679 37 1 3.7298 -3.2391 -1.7557 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072902057.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:57 Heat of formation + Delta-G solvation = 35.926783 kcal Electronic energy + Delta-G solvation = -20409.975450 eV Core-core repulsion = 17346.256629 eV Total energy + Delta-G solvation = -3063.718820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.38846 -38.44826 -37.00500 -34.66803 -32.99814 -32.36117 -30.23520 -29.19020 -27.74419 -26.62627 -25.66675 -23.26826 -22.61931 -21.39326 -20.72428 -18.51100 -16.91863 -16.54666 -16.42423 -15.64063 -15.52435 -15.13459 -14.93829 -14.22410 -14.10371 -13.84635 -13.70319 -12.98905 -12.86769 -12.76760 -12.47002 -12.12979 -12.04429 -11.68389 -11.45763 -11.26521 -11.10924 -10.87606 -10.78044 -10.51445 -10.10186 -9.60552 -9.44806 -8.90013 -8.38547 -8.15038 -7.61036 -7.45929 -5.99150 -4.03602 1.16977 1.68215 2.40463 2.71325 3.33850 3.40418 3.45592 3.75085 4.01959 4.28682 4.49774 4.56722 4.67328 4.82734 4.94150 5.06189 5.18283 5.21488 5.33441 5.40266 5.60764 5.68129 5.71672 5.85039 5.88864 5.90248 6.18002 6.24267 6.52193 6.69023 6.81032 6.83294 7.15019 7.21702 7.27088 7.52379 7.63168 7.98392 8.29650 8.51777 8.97168 9.22409 9.61587 11.08822 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022494 B = 0.005044 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.481294 B = 5550.024966 C = 6256.695856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.598 5.598 3 C 0.246 3.754 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.577 3.423 13 O -0.540 6.540 14 C -0.201 4.201 15 C 0.084 3.916 16 N -0.481 5.481 17 C 0.078 3.922 18 C 0.088 3.912 19 C -0.133 4.133 20 C -0.102 4.102 21 C -0.148 4.148 22 C -0.057 4.057 23 C -0.066 4.066 24 H 0.040 0.960 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.032 0.968 28 H 0.046 0.954 29 H 0.263 0.737 30 H 0.178 0.822 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.617 -18.035 1.575 21.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.330 5.330 3 C 0.127 3.873 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.365 3.635 13 O -0.418 6.418 14 C -0.212 4.212 15 C -0.045 4.045 16 N -0.164 5.164 17 C -0.064 4.064 18 C -0.016 4.016 19 C -0.153 4.153 20 C -0.121 4.121 21 C -0.168 4.168 22 C -0.075 4.075 23 C -0.071 4.071 24 H 0.059 0.941 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.195 0.805 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.176 -17.961 1.782 21.229 hybrid contribution -0.062 0.444 -0.914 1.018 sum -11.238 -17.517 0.868 20.830 Atomic orbital electron populations 1.21813 0.81979 1.03100 0.99513 1.48018 1.05945 1.07590 1.71455 1.19306 0.92699 0.77849 0.97491 1.21465 1.36381 1.06204 0.92367 0.92434 1.24931 0.95374 0.96400 0.97381 1.69935 1.38510 1.14328 1.30689 0.86507 0.77635 0.78588 0.84771 1.20684 1.21087 1.19861 1.17176 0.86743 0.82264 0.77358 1.90748 1.13555 1.87104 1.50407 1.20405 0.96936 0.95769 1.08089 1.22261 0.95890 0.85547 1.00792 1.43529 1.17842 1.11579 1.43420 1.21969 0.84669 0.98766 1.00992 1.18236 0.90173 0.95141 0.98075 1.19898 1.00004 0.93604 1.01825 1.20750 0.93526 0.99237 0.98634 1.20915 0.99715 0.93672 1.02460 1.20719 0.96164 0.96436 0.94230 1.18810 0.95298 0.92285 1.00680 0.94112 0.90682 0.92171 0.94987 0.93601 0.92763 0.80477 0.91083 0.89777 0.90123 0.86619 0.85957 0.85937 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 9.02 59.85 0.54 1.86 16 2 N -0.60 -13.41 2.86 -184.42 -0.53 -13.93 16 3 C 0.25 6.62 5.17 -5.19 -0.03 6.60 16 4 C -0.53 -15.30 9.39 -34.44 -0.32 -15.62 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 8 Si 0.90 22.28 29.54 -169.99 -5.02 17.25 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 12 C 0.58 13.30 7.60 -12.75 -0.10 13.21 16 13 O -0.54 -14.73 16.66 5.22 0.09 -14.65 16 14 C -0.20 -3.74 5.54 -103.31 -0.57 -4.32 16 15 C 0.08 1.16 9.00 -16.62 -0.15 1.01 16 16 N -0.48 -5.86 3.14 -121.60 -0.38 -6.24 16 17 C 0.08 0.54 10.99 59.84 0.66 1.19 16 18 C 0.09 1.27 6.79 -83.97 -0.57 0.70 16 19 C -0.13 -1.59 9.91 -39.43 -0.39 -1.98 16 20 C -0.10 -1.20 10.01 -39.57 -0.40 -1.60 16 21 C -0.15 -2.02 10.03 -39.57 -0.40 -2.42 16 22 C -0.06 -0.98 10.09 -39.38 -0.40 -1.38 16 23 C -0.07 -1.18 6.35 -104.95 -0.67 -1.84 16 24 H 0.04 0.54 7.31 -51.93 -0.38 0.16 16 25 H 0.07 1.25 8.03 -51.93 -0.42 0.84 16 26 H 0.06 0.88 5.89 -51.93 -0.31 0.58 16 27 H 0.03 0.86 8.07 -51.92 -0.42 0.44 16 28 H 0.05 1.39 7.36 -51.93 -0.38 1.01 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.18 1.91 6.16 -52.49 -0.32 1.59 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.42 8.13 -51.93 -0.42 0.00 16 33 H 0.08 0.46 8.03 -51.93 -0.42 0.04 16 34 H 0.12 1.04 8.01 -52.48 -0.42 0.62 16 35 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 36 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 37 H 0.13 2.43 8.06 -52.48 -0.42 2.01 16 LS Contribution 317.57 15.07 4.79 4.79 Total: -1.00 -36.14 317.57 -7.93 -44.07 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -4.72 Total: -2.09 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -2.89 Total: -2.92 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.17 Total: -46.45 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.09 Total: -14.65 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -36.14 -7.93 -44.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072902057.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.998 kcal (2) G-P(sol) polarization free energy of solvation -36.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds