Wall clock time and date at job start Mon Mar 30 2020 01:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00270 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00305 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 119.99595 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47443 * 90.00035 * 8 6 4 10 10 H 1.48504 * 109.47421 * 209.99819 * 8 6 4 11 11 H 1.48504 * 109.47327 * 329.99807 * 8 6 4 12 12 C 1.34776 * 119.99941 * 179.97438 * 2 1 3 13 13 O 1.21281 * 119.99879 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00079 * 359.97438 * 12 2 1 15 15 C 1.53003 * 109.47466 * 179.97438 * 14 12 2 16 16 C 1.50696 * 109.47086 * 180.02562 * 15 14 12 17 17 C 1.38365 * 119.84509 * 90.00523 * 16 15 14 18 18 C 1.37947 * 120.14940 * 179.97438 * 17 16 15 19 19 C 1.39629 * 119.84839 * 359.97438 * 18 17 16 20 20 C 1.43205 * 120.15217 * 180.02562 * 19 18 17 21 21 N 9.88593 * 75.30589 * 179.97438 * 2 1 3 22 22 C 1.39630 * 119.69955 * 0.27680 * 19 18 17 23 23 C 1.37952 * 119.84588 * 359.42138 * 22 19 18 24 24 H 1.09003 * 109.47017 * 270.00397 * 1 2 3 25 25 H 1.09003 * 109.46642 * 29.99918 * 1 2 3 26 26 H 1.08997 * 109.47130 * 150.00207 * 1 2 3 27 27 H 1.08996 * 109.47227 * 30.00015 * 3 2 1 28 28 H 1.08992 * 109.46794 * 150.00295 * 3 2 1 29 29 H 0.97002 * 120.00002 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.46840 * 59.99922 * 14 12 2 31 31 H 1.09000 * 109.47543 * 300.00434 * 14 12 2 32 32 H 1.09000 * 109.46457 * 60.00436 * 15 14 12 33 33 H 1.08992 * 109.47170 * 300.00253 * 15 14 12 34 34 H 1.07992 * 119.92688 * 0.02562 * 17 16 15 35 35 H 1.08003 * 120.07687 * 179.97438 * 18 17 16 36 36 H 1.07999 * 120.08232 * 179.69881 * 22 19 18 37 37 H 1.08002 * 119.92853 * 180.27179 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6729 7 7 3.3457 3.2572 -2.9128 8 14 3.7330 3.9292 -0.2531 9 1 5.1065 3.5082 0.1228 10 1 3.7479 5.3560 -0.6645 11 1 2.8271 3.7592 0.9113 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0017 15 6 2.3796 -3.6353 0.0014 16 6 1.6260 -4.9403 0.0020 17 6 1.2813 -5.5368 -1.1979 18 6 0.5919 -6.7317 -1.2048 19 6 0.2426 -7.3394 0.0028 20 6 -0.4726 -8.5801 0.0033 21 7 -1.0426 -9.5626 0.0043 22 6 0.5891 -6.7292 1.2100 23 6 1.2839 -5.5375 1.2023 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6085 2.0284 0.5138 28 1 3.1499 1.1383 0.5138 29 1 3.8225 4.0831 -3.0901 30 1 0.7584 -2.5306 -0.8881 31 1 0.7590 -2.5295 0.8919 32 1 3.0068 -3.5771 0.8910 33 1 3.0056 -3.5779 -0.8890 34 1 1.5532 -5.0664 -2.1312 35 1 0.3231 -7.1961 -2.1421 36 1 0.3177 -7.1913 2.1476 37 1 1.5564 -5.0666 2.1353 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073492074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:31 Heat of formation + Delta-G solvation = 12.007084 kcal Electronic energy + Delta-G solvation = -19254.282857 eV Core-core repulsion = 16189.526801 eV Total energy + Delta-G solvation = -3064.756056 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.97370 -39.03077 -36.83036 -35.04210 -34.04036 -32.55267 -31.40188 -30.40277 -28.43977 -26.13674 -25.16378 -23.07959 -22.60356 -21.33815 -19.21586 -18.43512 -16.99330 -16.68799 -16.07102 -15.40761 -15.36887 -15.06363 -14.78500 -14.34373 -14.12023 -13.83943 -13.45949 -13.25672 -13.08556 -12.94491 -12.61595 -12.39339 -12.20940 -12.05467 -11.85695 -11.48915 -11.46327 -11.41610 -10.99296 -10.83531 -10.53964 -10.16824 -9.57215 -9.34818 -9.18829 -8.89004 -8.61279 -7.73721 -6.11098 -4.10012 0.45871 1.02833 2.36895 2.64607 3.27394 3.30939 3.33430 3.35107 3.54618 3.58547 3.83940 4.37426 4.51110 4.55454 4.57345 5.02179 5.05265 5.08896 5.19667 5.24340 5.27504 5.44490 5.53081 5.61940 5.72424 5.80621 5.90040 5.93930 5.97330 6.14086 6.17331 6.37001 6.52543 6.67103 6.91658 7.18027 7.29888 7.58581 8.21412 8.44347 8.89590 8.95267 9.49187 11.02273 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.043647 B = 0.003023 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.356800 B = 9260.691177 C = 9338.266715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.599 5.599 3 C 0.214 3.786 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.505 3.495 13 O -0.542 6.542 14 C -0.132 4.132 15 C -0.074 4.074 16 C -0.042 4.042 17 C -0.117 4.117 18 C -0.066 4.066 19 C -0.044 4.044 20 C 0.259 3.741 21 N -0.426 5.426 22 C -0.068 4.068 23 C -0.119 4.119 24 H 0.045 0.955 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.029 0.971 28 H 0.037 0.963 29 H 0.265 0.735 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.261 -15.972 7.802 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.331 5.331 3 C 0.094 3.906 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.292 3.708 13 O -0.420 6.420 14 C -0.172 4.172 15 C -0.111 4.111 16 C -0.042 4.042 17 C -0.135 4.135 18 C -0.087 4.087 19 C -0.047 4.047 20 C -0.057 4.057 21 N -0.101 5.101 22 C -0.088 4.088 23 C -0.137 4.137 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.154 0.846 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.431 -17.323 7.695 20.360 hybrid contribution 0.406 1.080 0.496 1.256 sum -7.025 -16.242 8.190 19.500 Atomic orbital electron populations 1.21672 0.80925 1.03060 1.00454 1.47858 1.06300 1.07209 1.71705 1.19665 0.92467 0.80130 0.98357 1.21320 1.37011 1.07133 0.91260 0.90801 1.24868 0.95253 0.97374 0.95589 1.69895 1.41454 1.23588 1.18666 0.86840 0.80120 0.79751 0.82900 1.19894 1.21079 1.19082 1.20353 0.88101 0.85152 0.77232 1.90674 1.13944 1.87281 1.50105 1.21654 0.98991 0.92545 1.04056 1.20480 0.96663 0.88669 1.05318 1.20329 0.95013 0.95936 0.92970 1.21116 0.98703 0.95120 0.98575 1.21178 0.96048 0.94895 0.96568 1.15991 1.03110 0.90403 0.95189 1.25789 0.93277 0.92932 0.93654 1.81253 1.09962 1.11503 1.07423 1.21155 0.96175 0.94952 0.96525 1.21069 0.98932 0.95251 0.98407 0.93652 0.90612 0.92034 0.95284 0.94545 0.92544 0.89056 0.89351 0.89687 0.89453 0.84574 0.85038 0.85114 0.84754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 10.24 59.85 0.61 1.79 16 2 N -0.60 -11.64 2.86 -182.95 -0.52 -12.17 16 3 C 0.21 5.10 4.23 -5.19 -0.02 5.08 16 4 C -0.53 -14.89 9.94 -34.44 -0.34 -15.23 16 5 H 0.07 2.28 8.06 -52.48 -0.42 1.86 16 6 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 7 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 8 Si 0.88 21.22 27.47 -169.99 -4.67 16.55 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 12 C 0.50 9.37 7.67 -10.99 -0.08 9.28 16 13 O -0.54 -12.42 15.56 5.56 0.09 -12.33 16 14 C -0.13 -1.59 4.23 -27.88 -0.12 -1.71 16 15 C -0.07 -0.81 4.63 -27.88 -0.13 -0.93 16 16 C -0.04 -0.36 5.14 -104.53 -0.54 -0.89 16 17 C -0.12 -0.92 9.68 -39.64 -0.38 -1.31 16 18 C -0.07 -0.49 9.76 -39.17 -0.38 -0.87 16 19 C -0.04 -0.35 5.73 -106.93 -0.61 -0.96 16 20 C 0.26 2.51 15.33 -22.47 -0.34 2.17 16 21 N -0.43 -5.13 18.54 41.83 0.78 -4.36 16 22 C -0.07 -0.47 9.76 -39.17 -0.38 -0.86 16 23 C -0.12 -0.87 9.68 -39.64 -0.38 -1.26 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 26 H 0.06 0.70 6.44 -51.93 -0.33 0.36 16 27 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 28 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.09 0.99 7.40 -51.93 -0.38 0.60 16 31 H 0.09 0.86 8.11 -51.93 -0.42 0.44 16 32 H 0.08 0.96 8.04 -51.93 -0.42 0.55 16 33 H 0.09 1.07 8.04 -51.93 -0.42 0.65 16 34 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 327.44 15.07 4.93 4.93 Total: -1.00 -34.49 327.44 -6.65 -41.14 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -4.82 Total: -3.46 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -3.21 Total: -3.75 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 1.03 Total: -43.08 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.49 -6.65 -41.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073492074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.145 kcal (2) G-P(sol) polarization free energy of solvation -34.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds