Wall clock time and date at job start Mon Mar 30 2020 01:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46506 * 120.00098 * 2 1 4 4 C 1.50699 * 109.46928 * 269.99904 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00270 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00305 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 119.99595 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47443 * 90.00035 * 8 6 4 10 10 H 1.48504 * 109.47421 * 209.99819 * 8 6 4 11 11 H 1.48504 * 109.47327 * 329.99807 * 8 6 4 12 12 C 1.34776 * 119.99941 * 179.97438 * 2 1 3 13 13 O 1.21281 * 119.99879 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00079 * 359.97438 * 12 2 1 15 15 C 1.53003 * 109.47466 * 179.97438 * 14 12 2 16 16 C 1.50696 * 109.47086 * 180.02562 * 15 14 12 17 17 C 1.38365 * 119.84509 * 90.00523 * 16 15 14 18 18 C 1.37947 * 120.14940 * 179.97438 * 17 16 15 19 19 C 1.39629 * 119.84839 * 359.97438 * 18 17 16 20 20 C 1.43205 * 120.15217 * 180.02562 * 19 18 17 21 21 N 9.88593 * 75.30589 * 179.97438 * 2 1 3 22 22 C 1.39630 * 119.69955 * 0.27680 * 19 18 17 23 23 C 1.37952 * 119.84588 * 359.42138 * 22 19 18 24 24 H 1.09003 * 109.47017 * 270.00397 * 1 2 3 25 25 H 1.09003 * 109.46642 * 29.99918 * 1 2 3 26 26 H 1.08997 * 109.47130 * 150.00207 * 1 2 3 27 27 H 1.08996 * 109.47227 * 30.00015 * 3 2 1 28 28 H 1.08992 * 109.46794 * 150.00295 * 3 2 1 29 29 H 0.97002 * 120.00002 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.46840 * 59.99922 * 14 12 2 31 31 H 1.09000 * 109.47543 * 300.00434 * 14 12 2 32 32 H 1.09000 * 109.46457 * 60.00436 * 15 14 12 33 33 H 1.08992 * 109.47170 * 300.00253 * 15 14 12 34 34 H 1.07992 * 119.92688 * 0.02562 * 17 16 15 35 35 H 1.08003 * 120.07687 * 179.97438 * 18 17 16 36 36 H 1.07999 * 120.08232 * 179.69881 * 22 19 18 37 37 H 1.08002 * 119.92853 * 180.27179 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6729 7 7 3.3457 3.2572 -2.9128 8 14 3.7330 3.9292 -0.2531 9 1 5.1065 3.5082 0.1228 10 1 3.7479 5.3560 -0.6645 11 1 2.8271 3.7592 0.9113 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0017 15 6 2.3796 -3.6353 0.0014 16 6 1.6260 -4.9403 0.0020 17 6 1.2813 -5.5368 -1.1979 18 6 0.5919 -6.7317 -1.2048 19 6 0.2426 -7.3394 0.0028 20 6 -0.4726 -8.5801 0.0033 21 7 -1.0426 -9.5626 0.0043 22 6 0.5891 -6.7292 1.2100 23 6 1.2839 -5.5375 1.2023 24 1 -0.3633 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6085 2.0284 0.5138 28 1 3.1499 1.1383 0.5138 29 1 3.8225 4.0831 -3.0901 30 1 0.7584 -2.5306 -0.8881 31 1 0.7590 -2.5295 0.8919 32 1 3.0068 -3.5771 0.8910 33 1 3.0056 -3.5779 -0.8890 34 1 1.5532 -5.0664 -2.1312 35 1 0.3231 -7.1961 -2.1421 36 1 0.3177 -7.1913 2.1476 37 1 1.5564 -5.0666 2.1353 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073492074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:30 Heat of formation + Delta-G solvation = -9.334823 kcal Electronic energy + Delta-G solvation = -19255.208312 eV Core-core repulsion = 16189.526801 eV Total energy + Delta-G solvation = -3065.681511 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.85925 -40.22431 -37.64440 -36.60876 -35.00332 -34.58506 -31.96186 -31.49963 -30.04623 -27.36209 -26.36158 -24.12163 -23.64166 -22.40002 -19.85120 -19.84110 -19.12221 -17.93392 -17.04196 -16.91568 -16.32162 -16.14520 -15.84794 -15.42349 -15.08384 -14.78402 -14.56882 -14.32906 -14.23068 -13.91053 -13.80637 -13.63535 -13.52840 -13.42937 -13.19299 -12.78338 -12.60280 -12.34063 -12.19776 -12.14715 -11.98554 -11.73168 -11.69502 -10.81361 -10.60537 -9.89622 -9.65772 -9.32766 -8.32209 -6.36992 -0.18297 0.48016 1.34742 1.38585 1.46996 1.62246 1.89088 1.93932 2.32807 2.44108 2.89508 2.94660 3.02506 3.66170 3.92594 4.04478 4.08220 4.27449 4.30856 4.47386 4.48785 4.58997 4.72228 4.74175 4.87544 4.87983 4.97321 5.02629 5.06455 5.18314 5.30611 5.33336 5.40390 5.48783 5.67091 5.71918 5.93335 6.26347 6.45227 6.64610 6.78267 7.24384 7.50216 8.84699 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.043647 B = 0.003023 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.356800 B = 9260.691177 C = 9338.266715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.611 5.611 3 C 0.221 3.779 4 C -0.534 4.534 5 H 0.029 0.971 6 C 0.008 3.992 7 N -0.947 5.947 8 Si 0.948 3.052 9 H -0.276 1.276 10 H -0.277 1.277 11 H -0.237 1.237 12 C 0.493 3.507 13 O -0.597 6.597 14 C -0.117 4.117 15 C -0.068 4.068 16 C -0.045 4.045 17 C -0.122 4.122 18 C -0.063 4.063 19 C -0.050 4.050 20 C 0.282 3.718 21 N -0.472 5.472 22 C -0.060 4.060 23 C -0.115 4.115 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.019 0.981 29 H 0.268 0.732 30 H 0.109 0.891 31 H 0.124 0.876 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.151 0.849 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.606 -16.490 10.022 21.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.342 5.342 3 C 0.098 3.902 4 C -0.573 4.573 5 H 0.047 0.953 6 C -0.189 4.189 7 N -0.587 5.587 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.202 1.202 11 H -0.160 1.160 12 C 0.283 3.717 13 O -0.479 6.479 14 C -0.157 4.157 15 C -0.105 4.105 16 C -0.046 4.046 17 C -0.140 4.140 18 C -0.083 4.083 19 C -0.054 4.054 20 C -0.032 4.032 21 N -0.148 5.148 22 C -0.080 4.080 23 C -0.133 4.133 24 H 0.098 0.902 25 H 0.080 0.920 26 H 0.111 0.889 27 H 0.066 0.934 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.142 0.858 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.836 -17.866 9.924 22.266 hybrid contribution 0.819 1.194 -0.279 1.475 sum -8.017 -16.671 9.646 20.863 Atomic orbital electron populations 1.21980 0.77594 1.03998 1.02985 1.48012 1.08477 1.06057 1.71639 1.19321 0.92796 0.82892 0.95148 1.21582 1.36569 1.06607 0.92526 0.95299 1.25876 0.95420 0.99053 0.98592 1.70052 1.42827 1.24514 1.21299 0.85705 0.79576 0.77679 0.79924 1.20200 1.20198 1.16018 1.21543 0.87899 0.86817 0.75473 1.90640 1.16637 1.88215 1.52390 1.21662 0.98823 0.88703 1.06477 1.20341 0.96445 0.89694 1.04067 1.20134 0.95466 0.95092 0.93885 1.21192 0.98779 0.95344 0.98680 1.21301 0.95410 0.94525 0.97061 1.16090 1.03471 0.89855 0.95969 1.25987 0.92282 0.92680 0.92291 1.81280 1.11651 1.12953 1.08908 1.21351 0.95219 0.94543 0.96937 1.21218 0.98375 0.95173 0.98549 0.90150 0.92032 0.88890 0.93381 0.96328 0.92329 0.87286 0.85764 0.90296 0.91608 0.84135 0.83679 0.83176 0.83058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.94 10.24 127.77 1.31 3.25 16 2 N -0.61 -23.06 2.86 -851.13 -2.43 -25.49 16 3 C 0.22 10.44 4.23 85.63 0.36 10.80 16 4 C -0.53 -30.90 9.94 25.60 0.25 -30.65 16 5 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 6 C 0.01 0.49 5.47 84.65 0.46 0.95 16 7 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 8 Si 0.95 43.81 27.47 68.60 1.88 45.69 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.24 -9.75 6.54 99.48 0.65 -9.10 16 12 C 0.49 17.94 7.67 87.66 0.67 18.61 16 13 O -0.60 -27.94 15.56 -3.03 -0.05 -27.99 16 14 C -0.12 -2.52 4.23 29.85 0.13 -2.40 16 15 C -0.07 -1.38 4.63 29.85 0.14 -1.24 16 16 C -0.04 -0.66 5.14 -19.81 -0.10 -0.76 16 17 C -0.12 -1.66 9.68 22.23 0.22 -1.44 16 18 C -0.06 -0.77 9.76 22.54 0.22 -0.55 16 19 C -0.05 -0.67 5.73 -21.36 -0.12 -0.80 16 20 C 0.28 5.00 15.33 88.33 1.35 6.35 16 21 N -0.47 -10.93 18.54 19.00 0.35 -10.58 16 22 C -0.06 -0.65 9.76 22.54 0.22 -0.43 16 23 C -0.12 -1.31 9.68 22.23 0.22 -1.10 16 24 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.06 1.75 8.07 -2.39 -0.02 1.73 16 26 H 0.09 1.76 6.44 -2.39 -0.02 1.75 16 27 H 0.05 2.08 7.13 -2.39 -0.02 2.07 16 28 H 0.02 0.95 6.85 -2.39 -0.02 0.93 16 29 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 30 H 0.11 2.01 7.40 -2.38 -0.02 2.00 16 31 H 0.12 1.84 8.11 -2.39 -0.02 1.82 16 32 H 0.08 1.70 8.04 -2.39 -0.02 1.68 16 33 H 0.07 1.62 8.04 -2.39 -0.02 1.60 16 34 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 35 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 36 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 37 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -79.07 327.44 6.40 -72.67 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: 1.01 Total: 4.19 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 5.33 Total: 0.61 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -1.78 Total: -95.17 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.05 Total: -27.99 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.69 kcal Total: -79.07 6.40 -72.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073492074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.338 kcal (2) G-P(sol) polarization free energy of solvation -79.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds