Wall clock time and date at job start Mon Mar 30 2020 01:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46842 * 2 1 4 4 N 1.46506 * 109.47250 * 180.02562 * 3 2 1 5 5 C 1.36852 * 120.00039 * 264.43583 * 4 3 2 6 6 H 1.07998 * 119.99986 * 185.17221 * 5 4 3 7 7 C 1.39052 * 119.99944 * 5.17505 * 5 4 3 8 8 N 1.31368 * 119.99841 * 34.62337 * 7 5 4 9 9 Si 1.86797 * 119.99987 * 214.61986 * 7 5 4 10 10 H 1.48494 * 109.47019 * 94.99683 * 9 7 5 11 11 H 1.48492 * 109.47150 * 215.00304 * 9 7 5 12 12 H 1.48509 * 109.46922 * 335.00205 * 9 7 5 13 13 C 1.34776 * 119.99634 * 84.43089 * 4 3 2 14 14 O 1.21656 * 119.99475 * 185.72517 * 13 4 3 15 15 C 1.47234 * 120.00160 * 5.45514 * 13 4 3 16 16 C 1.39357 * 120.32439 * 55.21556 * 15 13 4 17 17 C 1.38238 * 120.24803 * 180.02562 * 16 15 13 18 18 C 1.38101 * 120.81756 * 359.97412 * 17 16 15 19 19 C 1.38951 * 120.27337 * 0.02562 * 18 17 16 20 20 N 1.37891 * 133.34639 * 179.97438 * 19 18 17 21 21 H 0.97003 * 125.57270 * 0.05885 * 20 19 18 22 22 C 1.36695 * 108.85827 * 180.02562 * 20 19 18 23 23 C 1.34446 * 109.62426 * 359.97438 * 22 20 19 24 24 C 1.40606 * 119.68356 * 359.73003 * 19 18 17 25 25 H 1.09003 * 109.47337 * 299.99637 * 1 2 3 26 26 H 1.09000 * 109.47665 * 59.99919 * 1 2 3 27 27 H 1.09002 * 109.47029 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47459 * 240.00851 * 2 1 3 29 29 H 1.08996 * 109.47199 * 120.00077 * 2 1 3 30 30 H 1.09003 * 109.46858 * 60.00070 * 3 2 1 31 31 H 1.09000 * 109.47739 * 300.00141 * 3 2 1 32 32 H 0.96998 * 119.99662 * 180.02562 * 8 7 5 33 33 H 1.08000 * 119.87815 * 0.02562 * 16 15 13 34 34 H 1.07995 * 119.59496 * 180.02562 * 17 16 15 35 35 H 1.08004 * 119.86161 * 180.02562 * 18 17 16 36 36 H 1.08008 * 125.18387 * 179.97438 * 22 20 19 37 37 H 1.08005 * 126.08134 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4427 -0.0006 5 6 4.1897 1.5574 1.1787 6 1 5.2664 1.6416 1.1720 7 6 3.4992 1.5656 2.3856 8 7 2.4143 0.8384 2.5266 9 14 4.1144 2.6106 3.8065 10 1 3.4095 3.9176 3.8012 11 1 3.8479 1.9096 5.0882 12 1 5.5750 2.8353 3.6596 13 6 4.1783 1.3296 -1.1626 14 8 5.3903 1.2248 -1.1556 15 6 3.4465 1.3269 -2.4403 16 6 2.5853 2.3748 -2.7600 17 6 1.8986 2.3704 -3.9598 18 6 2.0526 1.3339 -4.8593 19 6 2.9041 0.2750 -4.5688 20 7 3.2545 -0.8719 -5.2494 21 1 2.9229 -1.1335 -6.1227 22 6 4.1462 -1.5797 -4.4928 23 6 4.3833 -0.9241 -3.3432 24 6 3.6145 0.2654 -3.3555 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6765 1.9563 0.8900 31 1 1.6766 1.9565 -0.8899 32 1 1.9324 0.8444 3.3684 33 1 2.4538 3.1934 -2.0679 34 1 1.2342 3.1881 -4.1970 35 1 1.5088 1.3464 -5.7924 36 1 4.5922 -2.5219 -4.7754 37 1 5.0454 -1.2453 -2.5526 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080585376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:50 Heat of formation + Delta-G solvation = 18.184012 kcal Electronic energy + Delta-G solvation = -21199.537780 eV Core-core repulsion = 18135.049575 eV Total energy + Delta-G solvation = -3064.488205 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.33844 -40.39392 -37.49331 -37.14775 -34.27271 -33.22140 -32.88505 -30.53128 -29.72568 -27.59449 -26.50483 -24.32810 -22.80762 -22.30013 -22.03298 -20.90069 -19.00177 -18.57542 -17.80966 -16.99812 -16.54015 -16.16211 -15.84531 -15.69215 -15.32647 -15.27854 -14.67193 -14.57253 -14.04237 -13.89201 -13.68892 -13.50327 -13.17208 -12.83053 -12.68615 -12.54072 -12.32574 -12.25914 -12.12538 -12.07440 -11.96068 -11.35210 -10.77742 -10.69183 -10.26045 -9.76562 -9.10022 -8.53901 -8.44054 -5.78748 0.00663 0.69078 1.34191 1.42468 1.54312 1.83443 2.04138 2.28528 2.30541 2.85611 3.04883 3.21611 3.85336 4.11195 4.16329 4.30650 4.32745 4.40337 4.46393 4.52154 4.67776 4.77232 4.82261 4.95035 5.03246 5.05467 5.17844 5.22647 5.31060 5.44696 5.54666 5.56348 5.64044 5.75158 5.79901 5.88084 6.07359 6.23128 6.53739 6.82383 7.17909 7.47752 8.09382 8.56596 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023308 B = 0.006250 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.014900 B = 4478.863552 C = 4758.928908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.115 4.115 3 C 0.124 3.876 4 N -0.435 5.435 5 C -0.368 4.368 6 H 0.069 0.931 7 C 0.019 3.981 8 N -0.845 5.845 9 Si 0.974 3.026 10 H -0.263 1.263 11 H -0.271 1.271 12 H -0.281 1.281 13 C 0.460 3.540 14 O -0.646 6.646 15 C -0.080 4.080 16 C -0.132 4.132 17 C -0.101 4.101 18 C -0.109 4.109 19 C 0.076 3.924 20 N -0.571 5.571 21 H 0.439 0.561 22 C 0.083 3.917 23 C -0.250 4.250 24 C -0.102 4.102 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.019 0.981 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.278 0.722 33 H 0.120 0.880 34 H 0.167 0.833 35 H 0.164 0.836 36 H 0.217 0.783 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.883 -1.770 -14.214 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.154 4.154 3 C 0.001 3.999 4 N -0.150 5.150 5 C -0.495 4.495 6 H 0.087 0.913 7 C -0.188 4.188 8 N -0.480 5.480 9 Si 0.797 3.203 10 H -0.188 1.188 11 H -0.196 1.196 12 H -0.206 1.206 13 C 0.251 3.749 14 O -0.537 6.537 15 C -0.083 4.083 16 C -0.152 4.152 17 C -0.120 4.120 18 C -0.130 4.130 19 C -0.032 4.032 20 N -0.176 5.176 21 H 0.280 0.720 22 C -0.046 4.046 23 C -0.275 4.275 24 C -0.108 4.108 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.138 0.862 34 H 0.184 0.816 35 H 0.182 0.818 36 H 0.233 0.767 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.533 -1.951 -14.146 16.636 hybrid contribution 0.865 0.111 1.087 1.393 sum -7.668 -1.841 -13.060 15.256 Atomic orbital electron populations 1.21496 0.93810 1.01475 1.01491 1.21681 0.96852 0.96875 0.99990 1.21709 0.78903 0.97964 1.01285 1.43964 1.06611 1.59573 1.04810 1.19509 0.92941 1.52849 0.84218 0.91337 1.25847 0.96662 0.96308 0.99957 1.70252 1.19463 1.30929 1.27326 0.85256 0.78574 0.79305 0.77173 1.18835 1.19605 1.20607 1.18513 0.87102 0.84331 0.84924 1.90531 1.16334 1.58762 1.88064 1.19460 0.98636 0.96584 0.93663 1.21150 0.97408 0.97518 0.99101 1.21031 0.99649 0.99246 0.92034 1.20459 0.98999 0.91808 1.01693 1.18387 1.00813 0.91515 0.92445 1.41698 1.38998 1.17463 1.19449 0.71972 1.22302 0.93476 0.98485 0.90307 1.20754 1.07525 0.97921 1.01307 1.18333 1.00980 0.96139 0.95334 0.92837 0.92197 0.92490 0.96185 0.91661 0.90629 0.90969 0.91175 0.86219 0.81597 0.81834 0.76688 0.87480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.29 9.91 71.98 0.71 -3.58 16 2 C -0.12 -5.18 5.80 30.59 0.18 -5.00 16 3 C 0.12 5.87 4.36 86.38 0.38 6.24 16 4 N -0.43 -24.46 2.63 -639.44 -1.68 -26.14 16 5 C -0.37 -22.22 9.36 84.11 0.79 -21.43 16 6 H 0.07 4.55 7.38 -2.91 -0.02 4.52 16 7 C 0.02 1.00 4.66 84.96 0.40 1.40 16 8 N -0.84 -43.80 9.15 21.68 0.20 -43.60 16 9 Si 0.97 42.64 29.67 68.60 2.04 44.68 16 10 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 11 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 13 C 0.46 26.27 6.91 86.61 0.60 26.87 16 14 O -0.65 -42.49 16.69 -4.21 -0.07 -42.56 16 15 C -0.08 -3.66 4.82 -19.93 -0.10 -3.75 16 16 C -0.13 -4.85 7.60 22.54 0.17 -4.68 16 17 C -0.10 -2.66 9.99 22.24 0.22 -2.43 16 18 C -0.11 -2.62 10.06 22.41 0.23 -2.40 16 19 C 0.08 2.27 7.26 38.94 0.28 2.56 16 20 N -0.57 -12.41 6.14 -187.59 -1.15 -13.57 16 21 H 0.44 5.16 8.96 -92.71 -0.83 4.33 16 22 C 0.08 2.10 11.83 83.07 0.98 3.08 16 23 C -0.25 -9.78 10.66 22.24 0.24 -9.54 16 24 C -0.10 -4.22 6.02 -21.14 -0.13 -4.35 16 25 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.02 0.92 7.98 -2.39 -0.02 0.90 16 29 H 0.06 3.37 6.32 -2.39 -0.02 3.36 16 30 H 0.08 3.73 5.99 -2.39 -0.01 3.72 16 31 H 0.07 3.03 4.55 -2.39 -0.01 3.02 16 32 H 0.28 13.25 8.31 -92.71 -0.77 12.48 16 33 H 0.12 4.36 7.36 -2.91 -0.02 4.34 16 34 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 36 H 0.22 3.22 8.06 -2.91 -0.02 3.19 16 37 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -80.34 308.36 4.54 -75.80 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.27 Total: 22.40 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 4.95 Total: -17.01 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -2.64 Total: -83.31 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -0.07 Total: -42.56 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.04 Total: 44.68 kcal Total: -80.34 4.54 -75.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080585376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.980 kcal (2) G-P(sol) polarization free energy of solvation -80.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds